Wall clock time and date at job start Fri Apr 10 2020 14:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00359 * 2 1 4 4 H 1.48507 * 109.46961 * 270.00105 * 3 2 1 5 5 H 1.48501 * 109.47068 * 29.99865 * 3 2 1 6 6 H 1.48500 * 109.47320 * 149.99971 * 3 2 1 7 7 C 1.37884 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99804 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.46896 * 179.97438 * 9 7 2 11 11 O 1.42097 * 108.57377 * 65.51837 * 10 9 7 12 12 O 1.42098 * 108.57950 * 294.48658 * 10 9 7 13 13 C 1.81403 * 101.92088 * 179.97438 * 10 9 7 14 14 C 1.50701 * 109.47200 * 180.02562 * 13 10 9 15 15 O 1.21287 * 119.99646 * 0.02562 * 14 13 10 16 16 N 1.34773 * 119.99846 * 180.02562 * 14 13 10 17 17 C 1.39924 * 119.99818 * 185.27752 * 16 14 13 18 18 C 1.38873 * 120.07282 * 33.33155 * 17 16 14 19 19 C 1.38106 * 119.93058 * 179.97438 * 18 17 16 20 20 C 1.38280 * 120.07473 * 359.97438 * 19 18 17 21 21 C 1.38282 * 120.13715 * 0.04477 * 20 19 18 22 22 C 1.38106 * 120.07234 * 359.95443 * 21 20 19 23 23 H 0.97002 * 119.99740 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47137 * 60.00013 * 9 7 2 25 25 H 1.08995 * 109.47659 * 299.99927 * 9 7 2 26 26 H 1.09004 * 109.47239 * 60.00056 * 13 10 9 27 27 H 1.09003 * 109.47376 * 300.00756 * 13 10 9 28 28 H 0.97000 * 120.00137 * 5.27364 * 16 14 13 29 29 H 1.08005 * 120.03105 * 359.70896 * 18 17 16 30 30 H 1.08007 * 119.96089 * 179.97438 * 19 18 17 31 31 H 1.07997 * 119.92979 * 179.97438 * 20 19 18 32 32 H 1.08001 * 119.96391 * 179.97438 * 21 20 19 33 33 H 1.08003 * 120.03629 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1481 -3.8593 1.2264 12 8 3.1483 -3.8594 -1.2252 13 6 1.3241 -5.3162 0.0013 14 6 2.1443 -6.5804 0.0021 15 8 3.3556 -6.5174 0.0025 16 7 1.5320 -7.7810 0.0022 17 6 2.2889 -8.9524 0.1143 18 6 3.4515 -8.9597 0.8740 19 6 4.1961 -10.1177 0.9831 20 6 3.7850 -11.2693 0.3374 21 6 2.6281 -11.2653 -0.4201 22 6 1.8790 -10.1105 -0.5332 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 0.6950 -5.2913 -0.8885 27 1 0.6955 -5.2908 0.8915 28 1 0.5665 -7.8330 -0.0754 29 1 3.7752 -8.0595 1.3754 30 1 5.1005 -10.1238 1.5734 31 1 4.3693 -12.1734 0.4239 32 1 2.3098 -12.1662 -0.9236 33 1 0.9757 -10.1079 -1.1253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031944632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:23 Heat of formation + Delta-G solvation = -108.107740 kcal Electronic energy + Delta-G solvation = -19342.063155 eV Core-core repulsion = 16073.076062 eV Total energy + Delta-G solvation = -3268.987093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.75127 -39.53674 -37.80862 -36.83253 -36.05037 -35.38679 -32.30520 -31.86700 -31.02205 -29.79047 -25.60621 -24.19804 -23.49776 -21.76458 -19.80728 -19.23560 -18.71787 -18.52280 -17.46702 -17.24425 -17.15023 -16.73246 -16.37571 -16.11613 -15.49814 -15.28523 -14.77342 -14.45735 -14.34703 -14.04773 -13.98376 -13.59191 -13.38991 -12.94906 -12.88296 -12.72500 -12.71668 -12.53738 -12.23102 -12.00270 -11.77680 -11.66208 -11.28144 -10.94739 -10.76195 -9.90100 -9.21356 -8.41365 -6.56264 -0.86291 0.20143 0.43589 1.25337 1.38802 1.39139 1.51535 1.71513 2.15069 2.32665 2.85686 2.92951 2.96260 3.25349 3.40014 3.95926 3.98661 4.04701 4.21419 4.29211 4.49925 4.53597 4.58769 4.76553 4.78920 5.08629 5.28928 5.29956 5.38204 5.50893 5.59894 5.75349 6.03473 6.12521 6.52086 6.81405 7.13952 8.70897 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.054406 B = 0.003471 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.525041 B = 8065.872113 C = 8330.540534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.566 4.566 8 H 0.056 0.944 9 C -0.415 4.415 10 S 2.429 3.571 11 O -0.986 6.986 12 O -0.986 6.986 13 C -0.644 4.644 14 C 0.534 3.466 15 O -0.559 6.559 16 N -0.646 5.646 17 C 0.119 3.881 18 C -0.155 4.155 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.100 4.100 22 C -0.140 4.140 23 H 0.275 0.725 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.207 0.793 27 H 0.205 0.795 28 H 0.436 0.564 29 H 0.105 0.895 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 -21.778 -0.202 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.605 4.605 8 H 0.074 0.926 9 C -0.549 4.549 10 S 2.616 3.384 11 O -0.983 6.983 12 O -0.983 6.983 13 C -0.773 4.773 14 C 0.321 3.679 15 O -0.438 6.438 16 N -0.293 5.293 17 C 0.026 3.974 18 C -0.176 4.176 19 C -0.132 4.132 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.160 4.160 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.224 0.776 27 H 0.222 0.778 28 H 0.276 0.724 29 H 0.124 0.876 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.178 0.822 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.317 -21.603 -0.187 21.728 hybrid contribution -0.762 1.159 0.107 1.391 sum -3.079 -20.445 -0.080 20.675 Atomic orbital electron populations 1.69974 1.07053 1.28873 1.48251 1.25696 0.96008 1.02613 0.93052 0.85551 0.78897 0.78238 0.79265 1.18973 1.18996 1.19384 1.20742 0.92958 0.90982 1.55780 0.92566 1.27605 1.10236 1.09535 1.07532 1.07650 0.78930 0.78195 0.73655 1.93416 1.70972 1.86760 1.47169 1.93418 1.70952 1.86759 1.47181 1.30763 1.17838 1.10832 1.17859 1.19870 0.87441 0.85475 0.75067 1.90871 1.15840 1.87416 1.49629 1.43181 1.11835 1.02792 1.71463 1.18048 0.94332 0.86884 0.98179 1.21281 0.96745 0.99389 1.00148 1.21293 0.99718 0.92333 0.99814 1.21535 0.97564 0.98485 0.97671 1.21416 0.94185 0.98365 0.97887 1.21253 1.02926 0.91699 1.00163 0.91611 0.88512 0.88539 0.77606 0.77760 0.72382 0.87642 0.84717 0.83120 0.82179 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.72 13.29 21.45 0.28 -49.43 16 2 C 0.03 1.62 5.46 84.66 0.46 2.09 16 3 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.57 -31.74 9.13 25.60 0.23 -31.51 16 8 H 0.06 3.24 7.71 -2.91 -0.02 3.22 16 9 C -0.42 -19.12 5.56 71.23 0.40 -18.72 16 10 S 2.43 103.46 3.88 -56.49 -0.22 103.24 16 11 O -0.99 -49.59 17.94 -125.72 -2.26 -51.85 16 12 O -0.99 -49.64 17.95 -125.78 -2.26 -51.90 16 13 C -0.64 -16.38 6.29 71.24 0.45 -15.94 16 14 C 0.53 16.36 7.59 87.66 0.67 17.03 16 15 O -0.56 -23.31 13.31 -0.18 0.00 -23.31 16 16 N -0.65 -13.93 5.34 -303.50 -1.62 -15.55 16 17 C 0.12 2.82 6.28 38.15 0.24 3.06 16 18 C -0.16 -4.35 8.66 22.39 0.19 -4.16 16 19 C -0.11 -2.48 10.04 22.25 0.22 -2.26 16 20 C -0.13 -2.16 10.04 22.29 0.22 -1.94 16 21 C -0.10 -1.42 10.04 22.25 0.22 -1.19 16 22 C -0.14 -2.32 9.96 22.39 0.22 -2.10 16 23 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 24 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 25 H 0.10 4.17 8.14 -2.39 -0.02 4.15 16 26 H 0.21 3.30 8.14 -2.39 -0.02 3.28 16 27 H 0.21 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.44 5.07 8.82 -92.71 -0.82 4.25 16 29 H 0.11 3.59 6.41 -2.91 -0.02 3.57 16 30 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -85.93 307.66 -0.19 -86.12 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.32 Total: 13.30 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 3.53 Total: -55.63 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -1.34 Total: -64.98 kcal Atomic # 8 Polarization: -122.54 SS G_CDS: -4.52 Total: -127.06 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 103.46 SS G_CDS: -0.22 Total: 103.24 kcal Total: -85.93 -0.19 -86.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031944632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.988 kcal (2) G-P(sol) polarization free energy of solvation -85.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds