Wall clock time and date at job start Fri Apr 10 2020 14:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00021 * 2 1 4 4 H 1.48508 * 109.47282 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47322 * 300.00167 * 3 2 1 6 6 H 1.48498 * 109.47403 * 60.00417 * 3 2 1 7 7 C 1.38956 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99515 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00128 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99742 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46938 * 179.97438 * 12 10 9 14 14 C 1.34232 * 116.99743 * 179.97438 * 13 12 10 15 15 O 1.20821 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99482 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.46526 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 14 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 0.97005 * 120.00073 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00430 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.46817 * 59.99671 * 12 10 9 26 26 H 1.08997 * 109.47063 * 299.99928 * 12 10 9 27 27 H 1.08994 * 109.46984 * 60.00515 * 16 14 13 28 28 H 1.08994 * 109.47395 * 300.00054 * 16 14 13 29 29 H 1.08994 * 109.47301 * 60.00425 * 17 16 14 30 30 H 1.09003 * 109.46866 * 299.99861 * 17 16 14 31 31 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 32 32 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 33 33 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 8 2.1873 -5.9666 -0.0007 14 6 1.6742 -7.2070 0.0002 15 8 0.4764 -7.3653 0.0012 16 6 2.5923 -8.4021 -0.0010 17 6 1.7589 -9.6853 -0.0002 18 6 2.6769 -10.8804 -0.0009 19 6 3.1295 -11.4709 -1.1681 20 6 3.9346 -12.5197 -0.9919 21 16 4.1635 -12.8051 0.7285 22 6 3.1146 -11.4496 1.1233 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3907 -0.0005 25 1 0.6167 -4.9208 -0.8897 26 1 0.6175 -4.9205 0.8903 27 1 3.2224 -8.3771 0.8880 28 1 3.2197 -8.3773 -0.8919 29 1 1.1291 -9.7100 -0.8895 30 1 1.1312 -9.7102 0.8905 31 1 2.8520 -11.1096 -2.1474 32 1 4.3814 -13.1017 -1.7844 33 1 2.8664 -11.1249 2.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:29 Heat of formation + Delta-G solvation = -97.884408 kcal Electronic energy + Delta-G solvation = -18490.852558 eV Core-core repulsion = 15222.308782 eV Total energy + Delta-G solvation = -3268.543776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37230 -38.68928 -38.08263 -36.13814 -33.99969 -33.17720 -31.37983 -29.67099 -28.36560 -25.83096 -24.48399 -22.88398 -20.58676 -19.57376 -18.98989 -18.08673 -17.98456 -17.37264 -16.55222 -16.27829 -15.68359 -15.23701 -14.63292 -14.50004 -14.00412 -13.61565 -13.57295 -13.30870 -12.91085 -12.73255 -12.30264 -12.20759 -12.16205 -11.82421 -11.62426 -11.26401 -11.15266 -10.99524 -10.41336 -10.39604 -10.39088 -10.28797 -9.61713 -9.08879 -8.66608 -8.51526 -8.08354 -6.50130 -3.92059 0.72281 1.38664 1.70599 2.33340 2.34519 2.83428 3.11712 3.23851 3.31536 3.73986 4.11525 4.52738 4.61959 4.81977 4.84769 4.90298 5.09633 5.15050 5.24341 5.27194 5.39893 5.53210 5.58775 5.70604 5.77261 5.86001 6.06388 6.14518 6.22948 6.66726 7.47948 7.85904 7.97350 8.48714 9.07248 9.39554 9.89519 10.67208 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.052664 B = 0.002369 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.546783 B =11815.597719 C =12085.212203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.554 5.554 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.326 6.326 14 C 0.458 3.542 15 O -0.516 6.516 16 C -0.107 4.107 17 C -0.049 4.049 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.212 4.212 21 S 0.088 5.912 22 C -0.207 4.207 23 H 0.273 0.727 24 H 0.395 0.605 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -22.984 -0.119 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.241 6.241 14 C 0.301 3.699 15 O -0.406 6.406 16 C -0.145 4.145 17 C -0.089 4.089 18 C -0.112 4.112 19 C -0.159 4.159 20 C -0.347 4.347 21 S 0.352 5.648 22 C -0.343 4.343 23 H 0.083 0.917 24 H 0.228 0.772 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.550 -23.907 0.734 24.347 hybrid contribution -1.207 1.887 -0.832 2.390 sum 3.343 -22.020 -0.098 22.272 Atomic orbital electron populations 1.69622 1.06006 1.28373 1.49795 1.25319 0.95696 0.99887 0.96937 0.85740 0.79712 0.80740 0.77800 1.19085 1.20622 1.20621 1.19776 0.93500 0.81753 1.48031 0.87569 1.41723 1.09376 1.04120 1.63887 1.19349 0.88342 0.84114 0.85892 1.90562 1.13436 1.86809 1.55193 1.22738 0.90873 0.84659 1.03463 1.86559 1.40380 1.14311 1.82841 1.23754 0.88708 0.85028 0.72435 1.90652 1.16991 1.86895 1.46038 1.21336 0.97870 0.88809 1.06451 1.20125 0.95442 0.88458 1.04848 1.18901 1.01091 0.99131 0.92127 1.20160 0.99488 0.96674 0.99583 1.25607 1.06364 1.03760 0.98989 1.84307 1.47964 1.31583 1.00981 1.25546 1.04839 1.01256 1.02620 0.91683 0.77158 0.89566 0.89567 0.87475 0.87404 0.89721 0.89867 0.83990 0.81857 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.55 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.62 7.86 -10.98 -0.09 10.54 16 11 O -0.58 -16.11 16.08 -14.11 -0.23 -16.34 16 12 C 0.06 1.15 5.94 36.01 0.21 1.37 16 13 O -0.33 -6.03 9.75 -45.91 -0.45 -6.48 16 14 C 0.46 6.90 7.96 36.01 0.29 7.19 16 15 O -0.52 -8.68 15.73 -18.75 -0.29 -8.97 16 16 C -0.11 -1.13 5.79 -27.88 -0.16 -1.29 16 17 C -0.05 -0.46 4.76 -27.88 -0.13 -0.59 16 18 C -0.10 -0.89 5.06 -106.25 -0.54 -1.43 16 19 C -0.13 -1.06 9.98 -41.21 -0.41 -1.47 16 20 C -0.21 -1.60 11.23 29.04 0.33 -1.27 16 21 S 0.09 0.68 23.34 -107.50 -2.51 -1.83 16 22 C -0.21 -1.73 10.98 29.04 0.32 -1.41 16 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 25 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 26 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 27 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -32.53 315.10 -7.14 -39.68 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.63 Total: 7.34 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.42 Total: 3.68 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.67 Total: -37.51 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.97 Total: -31.79 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.53 -7.14 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.209 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds