Wall clock time and date at job start Fri Apr 10 2020 14:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86793 * 120.00021 * 2 1 4 4 H 1.48508 * 109.47282 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47322 * 300.00167 * 3 2 1 6 6 H 1.48498 * 109.47403 * 60.00417 * 3 2 1 7 7 C 1.38956 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99515 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00128 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99742 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46938 * 179.97438 * 12 10 9 14 14 C 1.34232 * 116.99743 * 179.97438 * 13 12 10 15 15 O 1.20821 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99482 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.46526 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 14 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 0.97005 * 120.00073 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00430 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.46817 * 59.99671 * 12 10 9 26 26 H 1.08997 * 109.47063 * 299.99928 * 12 10 9 27 27 H 1.08994 * 109.46984 * 60.00515 * 16 14 13 28 28 H 1.08994 * 109.47395 * 300.00054 * 16 14 13 29 29 H 1.08994 * 109.47301 * 60.00425 * 17 16 14 30 30 H 1.09003 * 109.46866 * 299.99861 * 17 16 14 31 31 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 32 32 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 33 33 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 8 2.1873 -5.9666 -0.0007 14 6 1.6742 -7.2070 0.0002 15 8 0.4764 -7.3653 0.0012 16 6 2.5923 -8.4021 -0.0010 17 6 1.7589 -9.6853 -0.0002 18 6 2.6769 -10.8804 -0.0009 19 6 3.1295 -11.4709 -1.1681 20 6 3.9346 -12.5197 -0.9919 21 16 4.1635 -12.8051 0.7285 22 6 3.1146 -11.4496 1.1233 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3907 -0.0005 25 1 0.6167 -4.9208 -0.8897 26 1 0.6175 -4.9205 0.8903 27 1 3.2224 -8.3771 0.8880 28 1 3.2197 -8.3773 -0.8919 29 1 1.1291 -9.7100 -0.8895 30 1 1.1312 -9.7102 0.8905 31 1 2.8520 -11.1096 -2.1474 32 1 4.3814 -13.1017 -1.7844 33 1 2.8664 -11.1249 2.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731239449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:28 Heat of formation + Delta-G solvation = -117.331170 kcal Electronic energy + Delta-G solvation = -18491.695833 eV Core-core repulsion = 15222.308782 eV Total energy + Delta-G solvation = -3269.387051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67128 -40.09009 -39.25452 -37.52916 -36.03976 -34.00640 -33.41851 -30.58778 -29.73182 -27.01739 -26.11067 -23.62569 -21.76567 -21.42243 -20.08272 -19.63286 -18.91049 -18.34784 -17.87119 -17.83340 -17.17773 -16.47141 -16.15616 -15.84269 -15.73704 -14.85311 -14.71243 -14.25179 -13.86949 -13.85005 -13.58633 -13.52009 -13.26411 -12.98317 -12.94277 -12.77172 -12.47340 -12.11048 -12.03050 -11.83261 -11.69080 -11.58953 -11.55242 -10.52005 -10.12583 -9.68773 -9.27421 -8.53194 -6.03822 0.11912 0.79979 1.10724 1.13662 1.34400 1.37708 1.45664 1.58847 1.84632 1.86225 2.30246 3.05855 3.12353 3.63694 3.95228 3.98382 4.07720 4.16039 4.22285 4.23034 4.29371 4.55936 4.61027 4.69670 4.85257 5.09572 5.18184 5.35750 5.39293 5.53015 5.59734 5.88611 6.45284 6.66966 7.02361 7.39191 7.92740 8.64085 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.052664 B = 0.002369 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.546783 B =11815.597719 C =12085.212203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.559 5.559 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.071 3.929 13 O -0.347 6.347 14 C 0.459 3.541 15 O -0.534 6.534 16 C -0.098 4.098 17 C -0.041 4.041 18 C -0.109 4.109 19 C -0.143 4.143 20 C -0.213 4.213 21 S 0.093 5.907 22 C -0.217 4.217 23 H 0.281 0.719 24 H 0.400 0.600 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.184 0.816 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -23.561 -0.242 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.196 5.196 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.006 4.006 13 O -0.262 6.262 14 C 0.304 3.696 15 O -0.424 6.424 16 C -0.136 4.136 17 C -0.081 4.081 18 C -0.122 4.122 19 C -0.173 4.173 20 C -0.348 4.348 21 S 0.357 5.643 22 C -0.352 4.352 23 H 0.090 0.910 24 H 0.234 0.766 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.201 0.799 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.565 -24.507 0.610 24.936 hybrid contribution -1.235 1.976 -0.788 2.460 sum 3.331 -22.531 -0.178 22.777 Atomic orbital electron populations 1.69677 1.06957 1.29682 1.49245 1.26142 0.96604 1.02629 0.95674 0.84789 0.78058 0.76533 0.78455 1.19562 1.19427 1.19426 1.19753 0.92918 0.83386 1.50571 0.89807 1.41766 1.09572 1.04236 1.64054 1.20161 0.88090 0.85462 0.84034 1.90524 1.15506 1.87735 1.56765 1.22494 0.90217 0.82640 1.05285 1.86570 1.40859 1.15307 1.83507 1.24581 0.89175 0.84601 0.71255 1.90642 1.18014 1.86819 1.46916 1.21478 0.97382 0.86962 1.07773 1.20029 0.95317 0.88135 1.04586 1.18895 1.01452 0.99165 0.92647 1.20341 0.99907 0.97091 0.99945 1.25910 1.05932 1.03615 0.99376 1.84306 1.47548 1.31163 1.01307 1.25777 1.04822 1.01450 1.03141 0.90953 0.76553 0.87625 0.87641 0.86055 0.85933 0.89992 0.90197 0.82946 0.79912 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 42.02 29.55 68.60 2.03 44.05 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.34 -18.98 9.68 84.04 0.81 -18.16 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.77 5.29 -306.97 -1.62 -30.39 16 10 C 0.44 21.37 7.86 87.66 0.69 22.06 16 11 O -0.62 -35.37 16.08 15.74 0.25 -35.11 16 12 C 0.07 2.66 5.94 71.24 0.42 3.09 16 13 O -0.35 -12.57 9.75 -45.09 -0.44 -13.01 16 14 C 0.46 13.29 7.96 71.24 0.57 13.85 16 15 O -0.53 -17.29 15.73 21.98 0.35 -16.95 16 16 C -0.10 -1.92 5.79 29.85 0.17 -1.75 16 17 C -0.04 -0.71 4.76 29.85 0.14 -0.57 16 18 C -0.11 -1.76 5.06 -20.92 -0.11 -1.87 16 19 C -0.14 -2.11 9.98 21.22 0.21 -1.90 16 20 C -0.21 -2.81 11.23 66.72 0.75 -2.06 16 21 S 0.09 1.28 23.34 -56.49 -1.32 -0.03 16 22 C -0.22 -3.29 10.98 66.72 0.73 -2.55 16 23 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 24 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 25 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 26 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 30 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 31 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -69.28 315.10 4.80 -64.48 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.41 Total: 25.23 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 4.86 Total: 10.08 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -1.34 Total: -78.73 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: 0.16 Total: -65.08 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.32 Total: -0.03 kcal Total: -69.28 4.80 -64.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.851 kcal (2) G-P(sol) polarization free energy of solvation -69.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds