Wall clock time and date at job start Fri Apr 10 2020 14:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47397 * 300.00654 * 3 2 1 6 6 H 1.48503 * 109.47023 * 60.00655 * 3 2 1 7 7 C 1.38953 * 120.00490 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00207 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99662 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00495 * 179.97438 * 10 9 7 13 13 O 1.45203 * 109.47513 * 180.02562 * 12 10 9 14 14 C 1.34768 * 117.00220 * 180.02562 * 13 12 10 15 15 O 1.21530 * 119.99857 * 359.97438 * 14 13 12 16 16 C 1.47244 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.40293 * 120.21553 * 269.99843 * 16 14 13 18 18 O 1.35648 * 120.14063 * 0.27663 * 17 16 14 19 19 C 1.38585 * 119.71841 * 180.02562 * 17 16 14 20 20 C 1.38172 * 120.16205 * 359.97438 * 19 17 16 21 21 C 1.38384 * 120.45139 * 359.97438 * 20 19 17 22 22 C 1.38163 * 120.27562 * 0.05081 * 21 20 19 23 23 F 1.35095 * 120.08600 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99993 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99741 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.47124 * 60.00145 * 12 10 9 27 27 H 1.09002 * 109.47315 * 300.00284 * 12 10 9 28 28 H 0.96706 * 113.99972 * 269.72663 * 18 17 16 29 29 H 1.08002 * 119.91434 * 180.02562 * 19 17 16 30 30 H 1.08004 * 119.77735 * 180.02562 * 20 19 17 31 31 H 1.07999 * 119.86280 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 8 2.1875 -5.9666 -0.0017 14 6 1.6724 -7.2119 -0.0019 15 8 0.4676 -7.3712 -0.0009 16 6 2.5694 -8.3796 -0.0020 17 6 2.9994 -8.9394 -1.2144 18 8 2.5952 -8.4038 -2.3933 19 6 3.8432 -10.0387 -1.2026 20 6 4.2599 -10.5811 -0.0020 21 6 3.8407 -10.0338 1.1979 22 6 2.9991 -8.9382 1.2075 23 9 2.5919 -8.4073 2.3811 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6163 -4.9205 -0.8902 27 1 0.6182 -4.9209 0.8897 28 1 1.7773 -8.7866 -2.7394 29 1 4.1766 -10.4719 -2.1340 30 1 4.9178 -11.4376 0.0000 31 1 4.1726 -10.4652 2.1308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772594119.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:22 Heat of formation + Delta-G solvation = -175.439824 kcal Electronic energy + Delta-G solvation = -21239.645193 eV Core-core repulsion = 17401.525185 eV Total energy + Delta-G solvation = -3838.120007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.25890 -40.70074 -39.45801 -38.06447 -36.98140 -36.09102 -33.98149 -31.71804 -31.33825 -30.20522 -28.37808 -25.06759 -24.14813 -23.09764 -21.24376 -19.58065 -19.09749 -18.15101 -18.05535 -17.43062 -16.79820 -16.74498 -15.92265 -15.86745 -15.76060 -15.21100 -14.97362 -14.50377 -14.19605 -13.96086 -13.82888 -13.10570 -12.69549 -12.45850 -12.33079 -12.17108 -11.92265 -11.60785 -11.35801 -11.13638 -10.61608 -10.44225 -10.37067 -10.28159 -9.59811 -9.40059 -9.08914 -8.50282 -8.06332 -6.48131 -3.89990 0.44751 0.66015 2.02989 2.56260 3.01430 3.13463 3.25374 3.33244 3.44738 3.75390 3.98618 4.10660 4.36186 4.49244 4.54613 4.78236 4.98795 5.15617 5.16585 5.38620 5.51330 5.55644 5.68541 5.70404 5.80389 6.05512 6.22793 6.47986 7.18747 7.50076 7.68105 7.96559 8.50554 9.09174 9.41128 9.91270 10.69246 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.031886 B = 0.003434 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.924665 B = 8150.792853 C = 8237.233133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.573 6.573 12 C 0.058 3.942 13 O -0.310 6.310 14 C 0.520 3.480 15 O -0.498 6.498 16 C -0.167 4.167 17 C 0.182 3.818 18 O -0.484 6.484 19 C -0.157 4.157 20 C -0.054 4.054 21 C -0.164 4.164 22 C 0.159 3.841 23 F -0.123 7.123 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.402 0.598 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -21.713 -1.207 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.457 6.457 12 C -0.019 4.019 13 O -0.224 6.224 14 C 0.361 3.639 15 O -0.387 6.387 16 C -0.169 4.169 17 C 0.136 3.864 18 O -0.296 6.296 19 C -0.176 4.176 20 C -0.072 4.072 21 C -0.183 4.183 22 C 0.139 3.861 23 F -0.101 7.101 24 H 0.083 0.917 25 H 0.229 0.771 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.260 0.740 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.264 -21.167 -1.111 21.621 hybrid contribution -0.986 0.778 0.153 1.265 sum 3.278 -20.389 -0.958 20.673 Atomic orbital electron populations 1.69623 1.06001 1.28357 1.49828 1.25313 0.95693 0.99857 0.96924 0.85737 0.79730 0.80725 0.77786 1.19075 1.20619 1.20620 1.19789 0.93531 0.81718 1.48006 0.87542 1.41694 1.09357 1.04025 1.63932 1.19271 0.88334 0.84001 0.85994 1.90574 1.13378 1.86724 1.55039 1.22847 0.90891 0.84476 1.03678 1.86727 1.39935 1.13584 1.82107 1.20657 0.86842 0.83775 0.72586 1.90870 1.15504 1.87019 1.45317 1.19566 1.04964 0.98398 0.94009 1.18101 0.93840 0.90952 0.83497 1.84805 1.46609 1.64177 1.34011 1.21436 1.00307 0.95977 0.99855 1.21049 0.96843 0.98661 0.90681 1.21123 0.99884 0.96612 1.00687 1.17416 0.95456 0.93517 0.79722 1.91585 1.88460 1.85375 1.44672 0.91694 0.77149 0.89254 0.89326 0.73986 0.83616 0.83716 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 8 H 0.11 3.14 7.16 -52.49 -0.38 2.76 16 9 N -0.55 -14.36 5.29 -10.97 -0.06 -14.41 16 10 C 0.44 11.07 7.86 -10.99 -0.09 10.98 16 11 O -0.57 -16.66 16.08 -14.12 -0.23 -16.89 16 12 C 0.06 1.19 5.95 36.00 0.21 1.41 16 13 O -0.31 -6.46 9.77 -47.36 -0.46 -6.93 16 14 C 0.52 9.34 6.57 34.39 0.23 9.56 16 15 O -0.50 -9.37 16.90 -19.29 -0.33 -9.69 16 16 C -0.17 -2.42 5.77 -104.81 -0.60 -3.02 16 17 C 0.18 2.12 6.72 -38.68 -0.26 1.86 16 18 O -0.48 -5.49 12.95 -18.64 -0.24 -5.73 16 19 C -0.16 -1.27 9.97 -39.48 -0.39 -1.67 16 20 C -0.05 -0.37 10.02 -39.55 -0.40 -0.77 16 21 C -0.16 -1.43 10.01 -39.56 -0.40 -1.83 16 22 C 0.16 2.04 7.29 -38.95 -0.28 1.76 16 23 F -0.12 -1.79 16.83 2.25 0.04 -1.75 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 26 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 27 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 28 H 0.40 2.56 9.06 45.56 0.41 2.98 16 29 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 31 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -35.68 299.95 -4.81 -40.49 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -1.53 Total: 7.86 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -2.22 Total: 10.21 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.67 Total: -38.07 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.26 Total: -39.23 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.68 -4.81 -40.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772594119.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.952 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds