Wall clock time and date at job start Fri Apr 10 2020 14:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47397 * 300.00654 * 3 2 1 6 6 H 1.48503 * 109.47023 * 60.00655 * 3 2 1 7 7 C 1.38953 * 120.00490 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00207 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99662 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00495 * 179.97438 * 10 9 7 13 13 O 1.45203 * 109.47513 * 180.02562 * 12 10 9 14 14 C 1.34768 * 117.00220 * 180.02562 * 13 12 10 15 15 O 1.21530 * 119.99857 * 359.97438 * 14 13 12 16 16 C 1.47244 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.40293 * 120.21553 * 269.99843 * 16 14 13 18 18 O 1.35648 * 120.14063 * 0.27663 * 17 16 14 19 19 C 1.38585 * 119.71841 * 180.02562 * 17 16 14 20 20 C 1.38172 * 120.16205 * 359.97438 * 19 17 16 21 21 C 1.38384 * 120.45139 * 359.97438 * 20 19 17 22 22 C 1.38163 * 120.27562 * 0.05081 * 21 20 19 23 23 F 1.35095 * 120.08600 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99993 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99741 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.47124 * 60.00145 * 12 10 9 27 27 H 1.09002 * 109.47315 * 300.00284 * 12 10 9 28 28 H 0.96706 * 113.99972 * 269.72663 * 18 17 16 29 29 H 1.08002 * 119.91434 * 180.02562 * 19 17 16 30 30 H 1.08004 * 119.77735 * 180.02562 * 20 19 17 31 31 H 1.07999 * 119.86280 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 8 2.1875 -5.9666 -0.0017 14 6 1.6724 -7.2119 -0.0019 15 8 0.4676 -7.3712 -0.0009 16 6 2.5694 -8.3796 -0.0020 17 6 2.9994 -8.9394 -1.2144 18 8 2.5952 -8.4038 -2.3933 19 6 3.8432 -10.0387 -1.2026 20 6 4.2599 -10.5811 -0.0020 21 6 3.8407 -10.0338 1.1979 22 6 2.9991 -8.9382 1.2075 23 9 2.5919 -8.4073 2.3811 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6163 -4.9205 -0.8902 27 1 0.6182 -4.9209 0.8897 28 1 1.7773 -8.7866 -2.7394 29 1 4.1766 -10.4719 -2.1340 30 1 4.9178 -11.4376 0.0000 31 1 4.1726 -10.4652 2.1308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772594119.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:21 Heat of formation + Delta-G solvation = -202.078006 kcal Electronic energy + Delta-G solvation = -21240.800311 eV Core-core repulsion = 17401.525185 eV Total energy + Delta-G solvation = -3839.275126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.24106 -41.96139 -40.58717 -39.93850 -37.75804 -37.63516 -36.09372 -33.48251 -32.59472 -30.94930 -30.07674 -26.82349 -25.43391 -23.87901 -22.44235 -21.53737 -20.14174 -19.98968 -19.36268 -18.47182 -18.25580 -17.67113 -17.48239 -17.33591 -16.85866 -16.66600 -16.04592 -15.87967 -15.70366 -15.61603 -14.95757 -14.78716 -14.02936 -13.87839 -13.60323 -13.35998 -13.18660 -12.96959 -12.86044 -12.50852 -12.31796 -12.12192 -12.03535 -11.79317 -11.63220 -10.60859 -10.20579 -10.16572 -9.83729 -8.56084 -6.07358 -0.37076 -0.06908 0.67445 1.23690 1.31897 1.42252 1.57331 1.80180 2.25480 2.29832 2.65591 2.88284 3.08695 3.23627 3.40995 3.75010 3.82122 3.90457 4.03568 4.13381 4.16846 4.46784 4.63721 4.90185 4.96202 5.11301 5.16413 5.33586 5.59115 5.83686 6.25556 6.44243 6.55285 6.98146 7.33299 7.87083 8.61217 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.031886 B = 0.003434 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.924665 B = 8150.792853 C = 8237.233133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 1.001 2.999 4 H -0.272 1.272 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.341 4.341 8 H 0.084 0.916 9 N -0.554 5.554 10 C 0.435 3.565 11 O -0.619 6.619 12 C 0.068 3.932 13 O -0.336 6.336 14 C 0.521 3.479 15 O -0.516 6.516 16 C -0.209 4.209 17 C 0.170 3.830 18 O -0.503 6.503 19 C -0.144 4.144 20 C -0.031 4.031 21 C -0.154 4.154 22 C 0.128 3.872 23 F -0.144 7.144 24 H 0.282 0.718 25 H 0.401 0.599 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.418 0.582 29 H 0.180 0.820 30 H 0.196 0.804 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -23.380 -1.647 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.823 3.177 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.102 0.898 9 N -0.191 5.191 10 C 0.222 3.778 11 O -0.506 6.506 12 C -0.009 4.009 13 O -0.251 6.251 14 C 0.364 3.636 15 O -0.405 6.405 16 C -0.212 4.212 17 C 0.124 3.876 18 O -0.317 6.317 19 C -0.162 4.162 20 C -0.049 4.049 21 C -0.172 4.172 22 C 0.108 3.892 23 F -0.122 7.122 24 H 0.092 0.908 25 H 0.235 0.765 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.280 0.720 29 H 0.197 0.803 30 H 0.213 0.787 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.129 -22.856 -1.557 23.476 hybrid contribution -1.271 1.193 0.253 1.761 sum 3.858 -21.663 -1.304 22.042 Atomic orbital electron populations 1.69677 1.06983 1.29819 1.48876 1.26168 0.96626 1.02638 0.95418 0.84766 0.77998 0.76326 0.78582 1.19624 1.19211 1.19270 1.19783 0.92972 0.83312 1.50892 0.89821 1.41716 1.09560 1.04063 1.63748 1.19995 0.88043 0.85299 0.84506 1.90530 1.15496 1.87644 1.56887 1.22642 0.90215 0.82474 1.05564 1.86728 1.40765 1.14807 1.82804 1.21354 0.87422 0.83479 0.71328 1.90828 1.16447 1.87054 1.46148 1.19734 1.07215 0.98066 0.96171 1.18425 0.94699 0.92018 0.82465 1.84754 1.47823 1.65209 1.33953 1.21862 0.98219 0.94158 1.02007 1.21676 0.95365 0.98762 0.89054 1.21564 0.97924 0.94722 1.03024 1.17891 0.97426 0.95321 0.78565 1.91521 1.89024 1.86033 1.45664 0.90823 0.76472 0.87062 0.87515 0.72031 0.80273 0.78703 0.80497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.27 13.05 21.66 0.28 -48.99 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 3 Si 1.00 42.78 29.55 68.60 2.03 44.80 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.34 -19.73 9.68 84.04 0.81 -18.91 16 8 H 0.08 5.15 7.16 -2.91 -0.02 5.13 16 9 N -0.55 -29.65 5.29 -306.99 -1.62 -31.27 16 10 C 0.44 22.76 7.86 87.66 0.69 23.45 16 11 O -0.62 -37.60 16.08 15.71 0.25 -37.35 16 12 C 0.07 2.85 5.95 71.23 0.42 3.28 16 13 O -0.34 -14.62 9.77 -50.40 -0.49 -15.11 16 14 C 0.52 19.43 6.57 70.19 0.46 19.89 16 15 O -0.52 -19.99 16.90 19.74 0.33 -19.66 16 16 C -0.21 -6.16 5.77 -19.99 -0.12 -6.27 16 17 C 0.17 3.78 6.72 22.85 0.15 3.93 16 18 O -0.50 -11.19 12.95 -89.63 -1.16 -12.36 16 19 C -0.14 -1.82 9.97 22.34 0.22 -1.59 16 20 C -0.03 -0.28 10.02 22.29 0.22 -0.05 16 21 C -0.15 -2.24 10.01 22.29 0.22 -2.02 16 22 C 0.13 3.26 7.29 22.68 0.17 3.43 16 23 F -0.14 -4.36 16.83 44.97 0.76 -3.60 16 24 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 26 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 27 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 28 H 0.42 5.22 9.06 -74.05 -0.67 4.55 16 29 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -80.85 299.95 3.92 -76.92 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.18 Total: 21.44 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 3.73 Total: 25.17 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.34 Total: -80.26 kcal Atomic # 8 Polarization: -83.41 SS G_CDS: -1.07 Total: -84.48 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.76 Total: -3.60 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -80.85 3.92 -76.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772594119.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.154 kcal (2) G-P(sol) polarization free energy of solvation -80.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds