Wall clock time and date at job start Fri Apr 10 2020 14:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48504 * 109.47324 * 266.73889 * 3 2 1 5 5 H 1.48492 * 109.47050 * 26.73859 * 3 2 1 6 6 H 1.48502 * 109.47081 * 146.73931 * 3 2 1 7 7 C 1.37879 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00448 * 354.07670 * 7 2 1 9 9 C 1.50703 * 119.99767 * 174.07696 * 7 2 1 10 10 O 1.42898 * 110.88823 * 325.47480 * 9 7 2 11 11 C 1.55157 * 111.00667 * 89.36121 * 9 7 2 12 12 C 1.54318 * 102.94568 * 153.61323 * 11 9 7 13 13 N 1.47029 * 107.26956 * 337.80532 * 12 11 9 14 14 C 1.34778 * 125.64569 * 178.98973 * 13 12 11 15 15 O 1.21709 * 119.99645 * 179.97438 * 14 13 12 16 16 C 1.46548 * 120.00213 * 359.97119 * 14 13 12 17 17 C 1.36736 * 125.42477 * 179.71885 * 16 14 13 18 18 C 1.37722 * 113.25458 * 179.79982 * 17 16 14 19 19 O 1.36211 * 122.49981 * 180.24233 * 18 17 16 20 20 C 1.34087 * 115.00222 * 0.49874 * 18 17 16 21 21 S 1.70602 * 110.97132 * 359.72412 * 20 18 17 22 22 C 1.47423 * 108.70165 * 358.93914 * 13 12 11 23 23 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00325 * 298.51044 * 10 9 7 25 25 H 1.08999 * 110.71551 * 271.97659 * 11 9 7 26 26 H 1.08999 * 110.72196 * 35.07006 * 11 9 7 27 27 H 1.09001 * 109.88283 * 97.22251 * 12 11 9 28 28 H 1.08998 * 109.88107 * 218.39181 * 12 11 9 29 29 H 1.07999 * 123.37191 * 359.97438 * 17 16 14 30 30 H 0.96697 * 114.00480 * 270.29468 * 19 18 17 31 31 H 1.07995 * 124.51501 * 179.74931 * 20 18 17 32 32 H 1.08994 * 110.36840 * 265.28556 * 22 13 12 33 33 H 1.09000 * 110.36337 * 142.96881 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5657 2.0066 -1.3978 5 1 1.4139 2.6715 0.6299 6 1 3.5106 1.4610 0.7679 7 6 2.0045 -1.1941 -0.0005 8 1 1.4689 -2.1270 0.0956 9 6 3.5055 -1.1975 -0.1352 10 8 3.9428 -0.1389 -0.9897 11 6 4.1889 -1.1086 1.2549 12 6 5.5529 -1.7888 1.0138 13 7 5.4053 -2.6578 -0.1630 14 6 6.3795 -3.4116 -0.7099 15 8 6.1426 -4.0962 -1.6879 16 6 7.7240 -3.4071 -0.1269 17 6 8.7896 -4.1304 -0.5863 18 6 9.9377 -3.9337 0.1485 19 8 11.1119 -4.5575 -0.1474 20 6 9.8121 -3.0865 1.1802 21 16 8.2219 -2.4765 1.2793 22 6 4.0149 -2.5688 -0.6449 23 1 -0.4849 0.8401 0.0004 24 1 3.6067 -0.1993 -1.8944 25 1 4.3237 -0.0687 1.5524 26 1 3.6116 -1.6507 2.0039 27 1 6.3153 -1.0334 0.8235 28 1 5.8283 -2.3857 1.8832 29 1 8.7369 -4.7879 -1.4415 30 1 11.2256 -5.4111 0.2924 31 1 10.6112 -2.8249 1.8579 32 1 3.4154 -3.3763 -0.2248 33 1 3.9881 -2.6025 -1.7341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844147298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:25 Heat of formation + Delta-G solvation = -81.273580 kcal Electronic energy + Delta-G solvation = -20097.834876 eV Core-core repulsion = 16830.011399 eV Total energy + Delta-G solvation = -3267.823477 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93613 -39.20331 -37.63063 -35.21936 -34.86000 -32.44342 -30.74561 -29.65044 -28.35601 -25.97560 -24.33078 -22.68365 -21.09265 -19.90586 -19.17537 -18.32645 -17.56450 -17.35887 -16.16508 -15.84125 -15.56569 -15.24589 -14.82158 -14.59501 -13.70054 -13.66207 -13.60320 -13.23669 -12.81499 -12.50805 -12.45439 -12.09910 -11.89556 -11.60830 -11.32257 -11.16857 -10.81892 -10.56243 -10.44030 -10.26609 -9.85043 -9.29688 -9.08060 -8.77013 -8.63538 -8.54117 -8.20661 -6.26625 -4.39750 0.36433 1.32246 1.73413 2.09266 3.15346 3.28004 3.39356 3.46673 3.60951 4.15851 4.41226 4.64043 4.83813 4.98815 5.00805 5.18926 5.23274 5.38952 5.54979 5.65118 5.76501 5.93382 5.98497 6.03484 6.34277 6.44175 6.57885 6.62007 6.96344 7.33638 7.35419 7.72750 8.04805 8.28256 8.56691 8.74722 9.33848 10.82254 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.004635 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.139400 B = 6039.865301 C = 6414.423730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.077 3.923 3 Si 0.944 3.056 4 H -0.290 1.290 5 H -0.323 1.323 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.562 6.562 11 C -0.117 4.117 12 C 0.086 3.914 13 N -0.603 5.603 14 C 0.596 3.404 15 O -0.538 6.538 16 C -0.243 4.243 17 C -0.087 4.087 18 C 0.078 3.922 19 O -0.485 6.485 20 C -0.296 4.296 21 S 0.258 5.742 22 C 0.092 3.908 23 H 0.268 0.732 24 H 0.374 0.626 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.158 0.842 30 H 0.387 0.613 31 H 0.170 0.830 32 H 0.077 0.923 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.157 -5.069 4.949 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.129 4.129 3 Si 0.778 3.222 4 H -0.217 1.217 5 H -0.254 1.254 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.370 6.370 11 C -0.155 4.155 12 C -0.039 4.039 13 N -0.335 5.335 14 C 0.384 3.616 15 O -0.418 6.418 16 C -0.363 4.363 17 C -0.121 4.121 18 C 0.021 3.979 19 O -0.294 6.294 20 C -0.433 4.433 21 S 0.526 5.474 22 C -0.030 4.030 23 H 0.077 0.923 24 H 0.222 0.778 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.175 0.825 30 H 0.241 0.759 31 H 0.188 0.812 32 H 0.095 0.905 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.615 -3.704 5.588 17.916 hybrid contribution 1.019 -0.789 -1.079 1.681 sum 17.634 -4.493 4.508 18.748 Atomic orbital electron populations 1.69957 1.06824 1.27919 1.47264 1.25096 0.94866 1.00403 0.92510 0.85813 0.77969 0.80188 0.78226 1.21732 1.25395 1.19310 1.21105 0.88155 0.95557 1.54408 0.89953 1.20232 0.93805 0.81581 0.86488 1.86125 1.75839 1.49972 1.25031 1.22999 0.91945 1.01257 0.99332 1.22282 1.00801 0.93392 0.87394 1.48438 1.11590 1.43184 1.30260 1.16488 0.82018 0.79954 0.83154 1.90817 1.81851 1.42784 1.26324 1.24514 0.98897 1.08464 1.04465 1.20834 0.90268 0.99871 1.01137 1.17006 0.86578 0.99003 0.95357 1.84946 1.34423 1.37838 1.72156 1.25893 1.05783 1.07143 1.04530 1.83612 0.97790 1.41658 1.24384 1.23173 0.78855 1.00872 1.00096 0.92270 0.77780 0.89634 0.89137 0.91228 0.91589 0.82480 0.75885 0.81243 0.90503 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.38 13.96 55.43 0.77 -24.60 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.94 22.19 24.87 -169.99 -4.23 17.97 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.32 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.04 5.23 56.52 0.30 -5.74 16 7 C -0.55 -14.03 8.86 -34.44 -0.31 -14.33 16 8 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.22 4.61 0.69 -89.62 -0.06 4.55 16 10 O -0.56 -11.76 8.86 -35.23 -0.31 -12.08 16 11 C -0.12 -2.14 5.81 -24.90 -0.14 -2.29 16 12 C 0.09 1.33 5.17 -3.06 -0.02 1.32 16 13 N -0.60 -10.76 3.33 -172.11 -0.57 -11.33 16 14 C 0.60 10.79 7.82 -12.91 -0.10 10.69 16 15 O -0.54 -11.32 17.10 5.18 0.09 -11.23 16 16 C -0.24 -3.58 6.38 -36.78 -0.23 -3.81 16 17 C -0.09 -1.18 10.00 -40.31 -0.40 -1.58 16 18 C 0.08 0.91 6.68 -41.23 -0.28 0.64 16 19 O -0.48 -4.93 13.62 -20.41 -0.28 -5.21 16 20 C -0.30 -3.09 10.89 29.27 0.32 -2.77 16 21 S 0.26 2.91 18.42 -107.50 -1.98 0.93 16 22 C 0.09 1.79 6.10 -2.53 -0.02 1.78 16 23 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 24 H 0.37 7.09 8.98 45.56 0.41 7.50 16 25 H 0.09 1.59 6.32 -51.93 -0.33 1.26 16 26 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 27 H 0.07 1.03 6.83 -51.93 -0.35 0.67 16 28 H 0.07 0.86 6.98 -51.93 -0.36 0.50 16 29 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.39 1.97 9.07 45.56 0.41 2.39 16 31 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.08 1.52 7.97 -51.93 -0.41 1.10 16 33 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 LS Contribution 288.06 15.07 4.34 4.34 Total: -1.00 -32.08 288.06 -5.48 -37.56 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -1.98 Total: 7.52 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.34 Total: -3.87 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.20 Total: -35.94 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.50 Total: -28.52 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.23 Total: 17.97 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.98 Total: 0.93 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.08 -5.48 -37.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844147298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.716 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds