Wall clock time and date at job start Fri Apr 10 2020 14:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48504 * 109.47324 * 266.73889 * 3 2 1 5 5 H 1.48492 * 109.47050 * 26.73859 * 3 2 1 6 6 H 1.48502 * 109.47081 * 146.73931 * 3 2 1 7 7 C 1.37879 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00448 * 354.07670 * 7 2 1 9 9 C 1.50703 * 119.99767 * 174.07696 * 7 2 1 10 10 O 1.42898 * 110.88823 * 325.47480 * 9 7 2 11 11 C 1.55157 * 111.00667 * 89.36121 * 9 7 2 12 12 C 1.54318 * 102.94568 * 153.61323 * 11 9 7 13 13 N 1.47029 * 107.26956 * 337.80532 * 12 11 9 14 14 C 1.34778 * 125.64569 * 178.98973 * 13 12 11 15 15 O 1.21709 * 119.99645 * 179.97438 * 14 13 12 16 16 C 1.46548 * 120.00213 * 359.97119 * 14 13 12 17 17 C 1.36736 * 125.42477 * 179.71885 * 16 14 13 18 18 C 1.37722 * 113.25458 * 179.79982 * 17 16 14 19 19 O 1.36211 * 122.49981 * 180.24233 * 18 17 16 20 20 C 1.34087 * 115.00222 * 0.49874 * 18 17 16 21 21 S 1.70602 * 110.97132 * 359.72412 * 20 18 17 22 22 C 1.47423 * 108.70165 * 358.93914 * 13 12 11 23 23 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00325 * 298.51044 * 10 9 7 25 25 H 1.08999 * 110.71551 * 271.97659 * 11 9 7 26 26 H 1.08999 * 110.72196 * 35.07006 * 11 9 7 27 27 H 1.09001 * 109.88283 * 97.22251 * 12 11 9 28 28 H 1.08998 * 109.88107 * 218.39181 * 12 11 9 29 29 H 1.07999 * 123.37191 * 359.97438 * 17 16 14 30 30 H 0.96697 * 114.00480 * 270.29468 * 19 18 17 31 31 H 1.07995 * 124.51501 * 179.74931 * 20 18 17 32 32 H 1.08994 * 110.36840 * 265.28556 * 22 13 12 33 33 H 1.09000 * 110.36337 * 142.96881 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5657 2.0066 -1.3978 5 1 1.4139 2.6715 0.6299 6 1 3.5106 1.4610 0.7679 7 6 2.0045 -1.1941 -0.0005 8 1 1.4689 -2.1270 0.0956 9 6 3.5055 -1.1975 -0.1352 10 8 3.9428 -0.1389 -0.9897 11 6 4.1889 -1.1086 1.2549 12 6 5.5529 -1.7888 1.0138 13 7 5.4053 -2.6578 -0.1630 14 6 6.3795 -3.4116 -0.7099 15 8 6.1426 -4.0962 -1.6879 16 6 7.7240 -3.4071 -0.1269 17 6 8.7896 -4.1304 -0.5863 18 6 9.9377 -3.9337 0.1485 19 8 11.1119 -4.5575 -0.1474 20 6 9.8121 -3.0865 1.1802 21 16 8.2219 -2.4765 1.2793 22 6 4.0149 -2.5688 -0.6449 23 1 -0.4849 0.8401 0.0004 24 1 3.6067 -0.1993 -1.8944 25 1 4.3237 -0.0687 1.5524 26 1 3.6116 -1.6507 2.0039 27 1 6.3153 -1.0334 0.8235 28 1 5.8283 -2.3857 1.8832 29 1 8.7369 -4.7879 -1.4415 30 1 11.2256 -5.4111 0.2924 31 1 10.6112 -2.8249 1.8579 32 1 3.4154 -3.3763 -0.2248 33 1 3.9881 -2.6025 -1.7341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844147298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:24 Heat of formation + Delta-G solvation = -108.202054 kcal Electronic energy + Delta-G solvation = -20099.002582 eV Core-core repulsion = 16830.011399 eV Total energy + Delta-G solvation = -3268.991183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30134 -40.17890 -39.10753 -36.46895 -36.08691 -34.45594 -32.24798 -30.81649 -29.79259 -27.54871 -25.65979 -24.04240 -22.22023 -21.53195 -20.21479 -19.72035 -19.20468 -18.22551 -17.33969 -17.28097 -17.01973 -16.83475 -16.33278 -15.88400 -15.26747 -14.98310 -14.63212 -14.52494 -14.29423 -14.06503 -13.74618 -13.52892 -13.31000 -13.17390 -12.79025 -12.45674 -12.27394 -12.12628 -11.95279 -11.67276 -11.29265 -11.19732 -10.63800 -10.46470 -10.10623 -9.63358 -9.37779 -8.33802 -6.48674 -0.62552 0.38197 0.83697 1.14299 1.52430 1.54827 1.73706 1.81705 2.00740 2.45173 2.96942 3.24310 3.45078 3.63963 3.76889 3.99812 4.08262 4.15054 4.29577 4.36421 4.45847 4.64495 4.76368 4.92220 5.02910 5.11297 5.13727 5.15180 5.35565 5.50926 6.03994 6.36361 6.58832 6.76731 6.89527 6.92709 7.29379 8.79141 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.004635 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.139400 B = 6039.865301 C = 6414.423730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.286 1.286 5 H -0.334 1.334 6 H -0.246 1.246 7 C -0.550 4.550 8 H 0.046 0.954 9 C 0.217 3.783 10 O -0.562 6.562 11 C -0.115 4.115 12 C 0.089 3.911 13 N -0.606 5.606 14 C 0.594 3.406 15 O -0.582 6.582 16 C -0.285 4.285 17 C -0.085 4.085 18 C 0.068 3.932 19 O -0.492 6.492 20 C -0.275 4.275 21 S 0.307 5.693 22 C 0.098 3.902 23 H 0.268 0.732 24 H 0.381 0.619 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.147 0.853 30 H 0.408 0.592 31 H 0.201 0.799 32 H 0.068 0.932 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.598 -4.273 6.604 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.171 4.171 3 Si 0.833 3.167 4 H -0.214 1.214 5 H -0.266 1.266 6 H -0.171 1.171 7 C -0.588 4.588 8 H 0.064 0.936 9 C 0.176 3.824 10 O -0.370 6.370 11 C -0.153 4.153 12 C -0.034 4.034 13 N -0.337 5.337 14 C 0.384 3.616 15 O -0.465 6.465 16 C -0.405 4.405 17 C -0.120 4.120 18 C 0.011 3.989 19 O -0.305 6.305 20 C -0.413 4.413 21 S 0.575 5.425 22 C -0.025 4.025 23 H 0.077 0.923 24 H 0.230 0.770 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.165 0.835 30 H 0.266 0.734 31 H 0.218 0.782 32 H 0.086 0.914 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.088 -2.924 7.268 21.562 hybrid contribution 0.018 -1.156 -1.586 1.963 sum 20.106 -4.080 5.683 21.288 Atomic orbital electron populations 1.70079 1.08603 1.28621 1.49990 1.25834 0.95262 1.03600 0.92426 0.84889 0.77256 0.76121 0.78467 1.21356 1.26615 1.17094 1.21318 0.90689 0.93922 1.52836 0.93591 1.20127 0.91477 0.82423 0.88346 1.86088 1.75549 1.49777 1.25612 1.22918 0.93269 1.02036 0.97124 1.22379 0.99565 0.93775 0.87634 1.48424 1.10644 1.43707 1.30906 1.16945 0.83110 0.78953 0.82568 1.90779 1.82852 1.44499 1.28322 1.24203 0.97355 1.11591 1.07358 1.20953 0.90927 0.99176 1.00926 1.16903 0.86421 0.99930 0.95641 1.84906 1.33419 1.39321 1.72810 1.26237 1.06046 1.05133 1.03841 1.83282 0.97768 1.39923 1.21547 1.22862 0.80378 0.99831 0.99393 0.92332 0.76985 0.89210 0.88804 0.89538 0.88392 0.83487 0.73365 0.78182 0.91391 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.18 13.96 21.45 0.30 -54.88 16 2 C 0.03 1.57 5.46 84.66 0.46 2.03 16 3 Si 1.00 45.18 24.87 68.60 1.71 46.88 16 4 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.33 -15.66 7.11 99.48 0.71 -14.95 16 6 H -0.25 -10.18 5.23 99.48 0.52 -9.66 16 7 C -0.55 -28.32 8.86 25.60 0.23 -28.09 16 8 H 0.05 2.65 7.98 -2.91 -0.02 2.63 16 9 C 0.22 8.97 0.69 -10.15 -0.01 8.96 16 10 O -0.56 -22.58 8.86 -148.98 -1.32 -23.90 16 11 C -0.12 -3.95 5.81 31.78 0.18 -3.77 16 12 C 0.09 2.52 5.17 86.73 0.45 2.96 16 13 N -0.61 -20.90 3.33 -816.63 -2.72 -23.61 16 14 C 0.59 21.16 7.82 86.41 0.68 21.83 16 15 O -0.58 -24.99 17.10 -4.38 -0.07 -25.06 16 16 C -0.28 -7.85 6.38 24.09 0.15 -7.70 16 17 C -0.08 -2.15 10.00 21.80 0.22 -1.93 16 18 C 0.07 1.37 6.68 21.20 0.14 1.51 16 19 O -0.49 -8.46 13.62 -95.96 -1.31 -9.76 16 20 C -0.27 -4.47 10.89 66.87 0.73 -3.74 16 21 S 0.31 5.66 18.42 -56.49 -1.04 4.62 16 22 C 0.10 3.87 6.10 86.86 0.53 4.40 16 23 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 24 H 0.38 14.08 8.98 -74.06 -0.66 13.42 16 25 H 0.09 3.02 6.32 -2.39 -0.02 3.01 16 26 H 0.09 3.13 8.03 -2.39 -0.02 3.12 16 27 H 0.09 2.18 6.83 -2.39 -0.02 2.17 16 28 H 0.10 2.16 6.98 -2.39 -0.02 2.14 16 29 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.41 2.85 9.07 -74.06 -0.67 2.17 16 31 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.07 2.77 7.97 -2.39 -0.02 2.75 16 33 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 Total: -1.00 -70.74 288.06 -1.04 -71.78 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.35 Total: 17.47 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 3.76 Total: -3.54 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -2.42 Total: -78.49 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -2.70 Total: -58.72 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.71 Total: 46.88 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -1.04 Total: 4.62 kcal Total: -70.74 -1.04 -71.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844147298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.419 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds