Wall clock time and date at job start Fri Apr 10 2020 14:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47044 * 179.97438 * 8 6 5 10 10 S 1.65604 * 119.99542 * 165.00177 * 9 8 6 11 11 O 1.42099 * 106.40069 * 178.54590 * 10 9 8 12 12 O 1.42105 * 106.40212 * 311.46125 * 10 9 8 13 13 C 1.76197 * 107.21805 * 65.00295 * 10 9 8 14 14 H 1.07994 * 120.00288 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99539 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99336 * 179.97438 * 15 13 10 17 17 Si 1.86792 * 120.00320 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47253 * 89.99970 * 17 15 13 19 19 H 1.48500 * 109.47308 * 209.99878 * 17 15 13 20 20 H 1.48496 * 109.47078 * 329.99925 * 17 15 13 21 21 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 22 22 C 1.37892 * 119.82327 * 359.97438 * 21 5 4 23 23 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 24 24 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 25 25 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 26 26 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 28 28 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 29 29 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 30 30 H 0.96994 * 119.99881 * 345.00635 * 9 8 6 31 31 H 0.97006 * 119.99538 * 179.97438 * 16 15 13 32 32 H 1.08001 * 120.09350 * 180.02562 * 21 5 4 33 33 H 1.07999 * 119.91308 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 7 7.9426 -1.0375 0.0053 10 16 9.0097 -2.2466 0.3819 11 8 10.3100 -1.6866 0.2595 12 8 8.5312 -2.8460 1.5781 13 6 8.8751 -3.4719 -0.8770 14 1 8.1804 -3.3344 -1.6924 15 6 9.6567 -4.6064 -0.8211 16 7 9.5558 -5.5213 -1.7605 17 14 10.8577 -4.8447 0.5895 18 1 10.1797 -5.5577 1.7018 19 1 12.0176 -5.6456 0.1223 20 1 11.3306 -3.5201 1.0661 21 6 3.5742 -1.2091 0.0060 22 6 2.1953 -1.2008 0.0063 23 1 -0.3634 0.0050 1.0276 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6511 2.1335 -0.0004 27 1 4.1100 2.1467 -0.0104 28 1 6.2385 -1.8730 0.8988 29 1 6.2392 -1.8806 -0.8811 30 1 8.2711 -0.1522 -0.2161 31 1 10.1059 -6.3193 -1.7214 32 1 4.1099 -2.1469 0.0110 33 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192996257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:34 Heat of formation + Delta-G solvation = -121.301518 kcal Electronic energy + Delta-G solvation = -19398.993473 eV Core-core repulsion = 16129.434255 eV Total energy + Delta-G solvation = -3269.559218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18060 -39.46570 -37.72536 -36.52577 -35.71352 -35.17545 -33.91924 -32.00646 -29.54805 -28.56235 -27.18495 -23.60359 -23.23988 -21.27244 -20.82801 -19.57254 -18.83511 -17.86441 -17.76019 -16.86161 -16.54887 -16.23119 -16.10359 -15.70139 -15.40557 -15.11477 -14.98277 -14.58083 -14.55654 -14.25722 -13.97573 -13.55493 -13.38360 -12.99340 -12.92113 -12.82075 -12.73645 -12.58256 -12.54643 -11.92021 -11.86367 -11.32428 -11.27615 -10.94026 -10.38463 -9.95284 -9.68594 -8.95870 -7.52783 -0.39310 0.07847 0.43565 1.07333 1.16337 1.24291 1.30849 1.90937 2.40218 2.47829 2.80119 2.84388 3.29844 3.76912 3.95075 4.02362 4.07027 4.14510 4.30247 4.38228 4.41959 4.45719 4.73181 4.82042 4.84450 4.88811 5.11103 5.25597 5.34603 5.38060 5.42643 5.60593 5.96667 6.01053 6.12046 6.35850 6.53996 8.21132 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.004116 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.872242 B = 6801.014887 C = 7336.304640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.068 4.068 5 C -0.194 4.194 6 C 0.404 3.596 7 O -0.480 6.480 8 C 0.066 3.934 9 N -1.112 6.112 10 S 2.700 3.300 11 O -1.029 7.029 12 O -1.023 7.023 13 C -1.035 5.035 14 H 0.113 0.887 15 C 0.112 3.888 16 N -0.849 5.849 17 Si 0.823 3.177 18 H -0.235 1.235 19 H -0.222 1.222 20 H -0.233 1.233 21 C -0.072 4.072 22 C -0.138 4.138 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.151 0.849 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.419 0.581 31 H 0.292 0.708 32 H 0.148 0.852 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.270 8.459 2.587 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.157 4.157 4 C -0.086 4.086 5 C -0.196 4.196 6 C 0.283 3.717 7 O -0.357 6.357 8 C -0.061 4.061 9 N -0.873 5.873 10 S 2.800 3.200 11 O -1.019 7.019 12 O -1.013 7.013 13 C -1.168 5.168 14 H 0.132 0.868 15 C -0.105 4.105 16 N -0.479 5.479 17 Si 0.640 3.360 18 H -0.158 1.158 19 H -0.144 1.144 20 H -0.155 1.155 21 C -0.090 4.090 22 C -0.156 4.156 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.169 0.831 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.255 0.745 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.418 8.648 3.292 20.612 hybrid contribution 0.774 -0.238 -0.484 0.943 sum -17.644 8.410 2.809 19.747 Atomic orbital electron populations 1.20961 0.88570 1.04305 1.03686 1.20649 0.98077 0.92749 0.93767 1.21299 0.93073 0.99295 1.02029 1.21506 0.95113 0.97243 0.94719 1.20287 0.92841 0.95926 1.10540 1.22707 0.89526 0.89611 0.69876 1.90466 1.71794 1.35151 1.38305 1.21808 0.80024 0.97874 1.06347 1.54971 1.16204 1.26824 1.89311 1.00491 0.71483 0.73410 0.74613 1.93443 1.40005 1.79919 1.88553 1.93378 1.81388 1.77621 1.48925 1.30863 1.35286 1.21133 1.29515 0.86848 1.25095 0.95116 0.93721 0.96610 1.70001 1.37119 1.08794 1.32033 0.87522 0.82565 0.84194 0.81749 1.15802 1.14378 1.15535 1.21801 0.95421 0.97376 0.94378 1.21397 0.93482 0.99275 1.01419 0.89585 0.90146 0.90046 0.83145 0.85365 0.85843 0.86263 0.74524 0.89760 0.83417 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.00 71.23 0.71 -0.25 16 2 C -0.05 -0.76 5.89 -19.79 -0.12 -0.88 16 3 C -0.14 -2.28 9.68 22.23 0.22 -2.06 16 4 C -0.07 -1.48 9.60 22.58 0.22 -1.26 16 5 C -0.19 -4.78 5.87 -20.15 -0.12 -4.90 16 6 C 0.40 12.22 7.19 28.03 0.20 12.42 16 7 O -0.48 -16.87 15.72 -2.97 -0.05 -16.92 16 8 C 0.07 2.14 5.31 85.63 0.46 2.59 16 9 N -1.11 -44.28 5.93 -190.79 -1.13 -45.41 16 10 S 2.70 134.20 4.24 -56.49 -0.24 133.96 16 11 O -1.03 -56.04 16.02 -128.00 -2.05 -58.09 16 12 O -1.02 -52.95 16.30 -128.00 -2.09 -55.03 16 13 C -1.03 -56.81 10.26 67.73 0.69 -56.11 16 14 H 0.11 6.23 8.06 -2.91 -0.02 6.21 16 15 C 0.11 6.31 5.47 84.66 0.46 6.77 16 16 N -0.85 -48.07 13.96 21.45 0.30 -47.77 16 17 Si 0.82 40.56 26.54 68.60 1.82 42.38 16 18 H -0.23 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.22 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.23 -11.96 5.61 99.48 0.56 -11.40 16 21 C -0.07 -1.44 9.47 22.58 0.21 -1.23 16 22 C -0.14 -2.20 9.68 22.23 0.22 -1.98 16 23 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 25 H 0.08 0.52 8.08 -2.38 -0.02 0.50 16 26 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 27 H 0.13 2.84 7.65 -2.91 -0.02 2.82 16 28 H 0.12 3.71 7.70 -2.39 -0.02 3.70 16 29 H 0.12 3.42 8.09 -2.39 -0.02 3.40 16 30 H 0.42 15.89 7.70 -96.75 -0.75 15.14 16 31 H 0.29 14.87 8.31 -92.70 -0.77 14.10 16 32 H 0.15 2.61 7.05 -2.91 -0.02 2.59 16 33 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -71.73 301.93 -0.04 -71.77 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.25 Total: 22.00 kcal Atomic # 6 Polarization: -50.04 SS G_CDS: 3.15 Total: -46.89 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -0.83 Total: -93.18 kcal Atomic # 8 Polarization: -125.86 SS G_CDS: -4.18 Total: -130.04 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.82 Total: 42.38 kcal Atomic # 16 Polarization: 134.20 SS G_CDS: -0.24 Total: 133.96 kcal Total: -71.73 -0.04 -71.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.533 kcal (2) G-P(sol) polarization free energy of solvation -71.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds