Wall clock time and date at job start Fri Apr 10 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 H 1.09001 * 109.47076 * 55.00614 * 3 2 1 5 5 O 1.42897 * 109.47299 * 295.00048 * 3 2 1 6 6 C 1.35923 * 116.99690 * 99.40034 * 5 3 2 7 7 C 1.38702 * 120.06168 * 354.33156 * 6 5 3 8 8 C 1.38152 * 119.95879 * 180.02562 * 7 6 5 9 9 C 1.38276 * 120.07702 * 0.02562 * 8 7 6 10 10 C 1.38243 * 120.11841 * 359.97438 * 9 8 7 11 11 C 1.38254 * 120.04540 * 0.29726 * 10 9 8 12 12 Cl 1.73600 * 120.04445 * 179.72533 * 11 10 9 13 13 C 1.50706 * 109.46866 * 175.00164 * 3 2 1 14 14 O 1.21293 * 119.99767 * 120.00363 * 13 3 2 15 15 N 1.34778 * 119.99761 * 300.00120 * 13 3 2 16 16 C 1.37107 * 119.99707 * 179.97438 * 15 13 3 17 17 H 1.08004 * 119.99699 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99996 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99951 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46946 * 60.00204 * 20 18 16 22 22 H 1.48501 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47038 * 300.00265 * 20 18 16 24 24 H 1.09003 * 109.46902 * 59.99514 * 1 2 3 25 25 H 1.09000 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46431 * 299.99944 * 1 2 3 27 27 H 1.09001 * 109.46431 * 240.00056 * 2 1 3 28 28 H 1.08993 * 109.46945 * 120.00457 * 2 1 3 29 29 H 1.08004 * 120.02191 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.96360 * 179.97438 * 8 7 6 31 31 H 1.08005 * 119.94293 * 180.02562 * 9 8 7 32 32 H 1.08006 * 119.98227 * 180.02562 * 10 9 8 33 33 H 0.96992 * 120.00329 * 0.02562 * 15 13 3 34 34 H 0.96991 * 119.99919 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 0.5662 2.8848 -1.1835 7 6 -0.1987 2.9631 -0.0291 8 6 -1.3123 3.7799 0.0065 9 6 -1.6655 4.5190 -1.1075 10 6 -0.9054 4.4434 -2.2597 11 6 0.2068 3.6233 -2.3027 12 17 1.1572 3.5229 -3.7519 13 6 3.5420 1.4442 0.1238 14 8 4.2217 1.9436 -0.7479 15 7 4.1298 0.8910 1.2031 16 6 5.4963 0.8921 1.3155 17 1 6.1015 1.3367 0.5393 18 6 6.1023 0.3213 2.4279 19 7 5.3658 -0.2201 3.3720 20 14 7.9640 0.3235 2.5813 21 1 8.4589 1.7236 2.5820 22 1 8.3569 -0.3405 3.8502 23 1 8.5561 -0.4103 1.4341 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.0761 2.3858 0.8414 30 1 -1.9082 3.8406 0.9052 31 1 -2.5363 5.1572 -1.0771 32 1 -1.1830 5.0220 -3.1284 33 1 3.5862 0.4914 1.9000 34 1 5.7889 -0.6189 4.1484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096451219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:40 Heat of formation + Delta-G solvation = -57.596701 kcal Electronic energy + Delta-G solvation = -19925.025128 eV Core-core repulsion = 16656.184652 eV Total energy + Delta-G solvation = -3268.840476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44354 -38.46902 -37.02331 -36.17994 -34.02703 -33.47323 -31.21127 -30.77648 -29.96694 -27.39093 -24.66552 -23.23946 -22.40402 -21.40317 -19.33176 -18.52468 -18.03918 -16.36015 -16.19717 -15.73069 -15.39342 -14.72986 -14.55062 -14.06961 -13.96947 -13.66121 -13.59802 -13.07925 -12.99839 -12.26973 -12.11081 -11.85910 -11.62862 -11.53234 -11.38710 -11.28995 -11.11247 -10.82133 -10.65601 -10.47606 -10.34745 -10.26192 -9.57710 -8.90112 -8.48907 -8.06189 -8.00373 -6.49365 -3.90715 1.11514 1.32445 2.33708 3.13867 3.17633 3.23122 3.30755 3.61043 3.74340 4.14080 4.66589 4.75505 4.86674 4.94511 5.02248 5.15790 5.20512 5.27164 5.41777 5.48298 5.54606 5.67144 5.84633 6.01558 6.05097 6.14212 6.18999 6.21783 6.35686 6.41193 6.62006 7.46586 7.48659 7.95767 8.50764 9.08982 9.41155 9.92140 10.67902 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.004425 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.741571 B = 6326.804497 C = 6846.050254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.072 3.928 4 H 0.090 0.910 5 O -0.265 6.265 6 C 0.153 3.847 7 C -0.206 4.206 8 C -0.075 4.075 9 C -0.158 4.158 10 C -0.075 4.075 11 C -0.075 4.075 12 Cl -0.056 7.056 13 C 0.438 3.562 14 O -0.570 6.570 15 N -0.553 5.553 16 C -0.302 4.302 17 H 0.104 0.896 18 C 0.026 3.974 19 N -0.899 5.899 20 Si 0.933 3.067 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.393 0.607 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 4.505 -4.496 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.012 3.988 4 H 0.107 0.893 5 O -0.176 6.176 6 C 0.105 3.895 7 C -0.225 4.225 8 C -0.093 4.093 9 C -0.176 4.176 10 C -0.094 4.094 11 C -0.102 4.102 12 Cl -0.027 7.027 13 C 0.223 3.777 14 O -0.453 6.453 15 N -0.191 5.191 16 C -0.431 4.431 17 H 0.122 0.878 18 C -0.176 4.176 19 N -0.540 5.540 20 Si 0.759 3.241 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.160 0.840 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.227 0.773 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.797 4.677 -5.199 16.367 hybrid contribution 0.587 -0.319 0.715 0.978 sum -14.210 4.359 -4.484 15.525 Atomic orbital electron populations 1.21946 0.95367 1.02092 1.01784 1.22004 0.96256 0.94924 1.04442 1.22471 0.96175 0.93954 0.86169 0.89273 1.86319 1.40529 1.57062 1.33669 1.18874 0.87532 0.90260 0.92853 1.21444 0.98120 1.04717 0.98230 1.21008 0.95546 0.94416 0.98347 1.20941 1.01237 1.02380 0.93062 1.20874 0.92635 0.96776 0.99072 1.20223 0.97741 1.03402 0.88825 1.98373 1.71724 1.97560 1.35084 1.19467 0.87486 0.85678 0.85082 1.90578 1.64197 1.49388 1.41161 1.41745 1.07742 1.50936 1.18651 1.19683 0.81307 1.36011 1.06071 0.87777 1.25267 1.00742 0.96419 0.95207 1.69596 1.36397 1.38153 1.09879 0.85886 0.81900 0.78738 0.77554 1.19798 1.20877 1.19769 0.92479 0.92201 0.92522 0.90236 0.89383 0.83995 0.85361 0.85322 0.84685 0.77328 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.48 37.16 0.32 -1.59 16 2 C -0.14 -2.15 5.59 -26.73 -0.15 -2.30 16 3 C 0.07 1.33 2.54 -27.88 -0.07 1.26 16 4 H 0.09 1.44 5.43 -51.93 -0.28 1.16 16 5 O -0.26 -5.08 8.57 -39.41 -0.34 -5.42 16 6 C 0.15 2.45 5.65 -39.19 -0.22 2.23 16 7 C -0.21 -2.71 7.36 -39.44 -0.29 -3.00 16 8 C -0.07 -0.80 10.04 -39.60 -0.40 -1.19 16 9 C -0.16 -1.59 10.04 -39.57 -0.40 -1.99 16 10 C -0.07 -0.87 9.83 -39.57 -0.39 -1.26 16 11 C -0.07 -1.11 6.33 -39.36 -0.25 -1.36 16 12 Cl -0.06 -0.89 28.50 -51.86 -1.48 -2.36 16 13 C 0.44 10.59 7.18 -10.98 -0.08 10.51 16 14 O -0.57 -16.26 16.08 -14.36 -0.23 -16.49 16 15 N -0.55 -13.80 5.15 -10.96 -0.06 -13.85 16 16 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 17 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -23.77 13.05 55.50 0.72 -23.04 16 20 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H 0.06 0.74 6.53 -51.93 -0.34 0.40 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 6.73 -51.93 -0.35 0.26 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.09 1.34 7.43 -51.93 -0.39 0.96 16 29 H 0.14 1.72 4.27 -52.48 -0.22 1.50 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.39 9.16 7.26 -40.82 -0.30 8.87 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -31.59 304.02 -7.49 -39.08 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.50 Total: 8.34 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.17 Total: -6.57 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.67 Total: -36.89 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.57 Total: -21.90 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.48 Total: -2.36 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.59 -7.49 -39.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096451219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.514 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds