Wall clock time and date at job start Fri Apr 10 2020 14:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 H 1.09001 * 109.47076 * 55.00614 * 3 2 1 5 5 O 1.42897 * 109.47299 * 295.00048 * 3 2 1 6 6 C 1.35923 * 116.99690 * 99.40034 * 5 3 2 7 7 C 1.38702 * 120.06168 * 354.33156 * 6 5 3 8 8 C 1.38152 * 119.95879 * 180.02562 * 7 6 5 9 9 C 1.38276 * 120.07702 * 0.02562 * 8 7 6 10 10 C 1.38243 * 120.11841 * 359.97438 * 9 8 7 11 11 C 1.38254 * 120.04540 * 0.29726 * 10 9 8 12 12 Cl 1.73600 * 120.04445 * 179.72533 * 11 10 9 13 13 C 1.50706 * 109.46866 * 175.00164 * 3 2 1 14 14 O 1.21293 * 119.99767 * 120.00363 * 13 3 2 15 15 N 1.34778 * 119.99761 * 300.00120 * 13 3 2 16 16 C 1.37107 * 119.99707 * 179.97438 * 15 13 3 17 17 H 1.08004 * 119.99699 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99996 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99951 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46946 * 60.00204 * 20 18 16 22 22 H 1.48501 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47038 * 300.00265 * 20 18 16 24 24 H 1.09003 * 109.46902 * 59.99514 * 1 2 3 25 25 H 1.09000 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46431 * 299.99944 * 1 2 3 27 27 H 1.09001 * 109.46431 * 240.00056 * 2 1 3 28 28 H 1.08993 * 109.46945 * 120.00457 * 2 1 3 29 29 H 1.08004 * 120.02191 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.96360 * 179.97438 * 8 7 6 31 31 H 1.08005 * 119.94293 * 180.02562 * 9 8 7 32 32 H 1.08006 * 119.98227 * 180.02562 * 10 9 8 33 33 H 0.96992 * 120.00329 * 0.02562 * 15 13 3 34 34 H 0.96991 * 119.99919 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 0.5662 2.8848 -1.1835 7 6 -0.1987 2.9631 -0.0291 8 6 -1.3123 3.7799 0.0065 9 6 -1.6655 4.5190 -1.1075 10 6 -0.9054 4.4434 -2.2597 11 6 0.2068 3.6233 -2.3027 12 17 1.1572 3.5229 -3.7519 13 6 3.5420 1.4442 0.1238 14 8 4.2217 1.9436 -0.7479 15 7 4.1298 0.8910 1.2031 16 6 5.4963 0.8921 1.3155 17 1 6.1015 1.3367 0.5393 18 6 6.1023 0.3213 2.4279 19 7 5.3658 -0.2201 3.3720 20 14 7.9640 0.3235 2.5813 21 1 8.4589 1.7236 2.5820 22 1 8.3569 -0.3405 3.8502 23 1 8.5561 -0.4103 1.4341 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.0761 2.3858 0.8414 30 1 -1.9082 3.8406 0.9052 31 1 -2.5363 5.1572 -1.0771 32 1 -1.1830 5.0220 -3.1284 33 1 3.5862 0.4914 1.9000 34 1 5.7889 -0.6189 4.1484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096451219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:39 Heat of formation + Delta-G solvation = -76.911025 kcal Electronic energy + Delta-G solvation = -19925.862660 eV Core-core repulsion = 16656.184652 eV Total energy + Delta-G solvation = -3269.678008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69297 -40.05186 -38.39658 -37.29044 -36.06376 -34.78793 -33.17801 -31.72924 -30.99786 -28.84588 -26.52220 -24.27117 -23.40266 -22.78279 -20.99565 -20.12596 -19.59135 -18.00080 -17.27945 -17.00471 -16.73152 -16.44494 -15.83808 -15.61783 -15.32053 -15.06656 -14.78577 -14.66566 -14.24044 -13.56802 -13.41312 -13.24943 -12.97069 -12.90628 -12.76111 -12.51214 -12.44689 -12.30453 -12.13493 -11.98155 -11.82985 -11.58354 -11.47569 -10.38145 -10.10068 -9.84513 -9.14208 -8.52244 -6.02172 0.17748 0.35170 1.25007 1.36304 1.40908 1.51070 1.84353 1.94764 2.32360 2.68137 3.09741 3.12996 3.60320 3.81264 3.85759 3.93571 4.14506 4.18348 4.33305 4.39192 4.48962 4.50847 4.76780 4.81155 5.01664 5.06182 5.16700 5.29728 5.32144 5.36267 5.47018 5.73406 5.89528 6.28344 6.52390 7.04401 7.41910 7.97713 8.64260 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.004425 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.741571 B = 6326.804497 C = 6846.050254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.085 3.915 4 H 0.114 0.886 5 O -0.297 6.297 6 C 0.115 3.885 7 C -0.210 4.210 8 C -0.067 4.067 9 C -0.142 4.142 10 C -0.075 4.075 11 C -0.097 4.097 12 Cl -0.080 7.080 13 C 0.430 3.570 14 O -0.624 6.624 15 N -0.554 5.554 16 C -0.341 4.341 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.912 5.912 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.266 1.266 23 H -0.273 1.273 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.400 0.600 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 4.999 -2.908 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.026 3.974 4 H 0.131 0.869 5 O -0.210 6.210 6 C 0.069 3.931 7 C -0.228 4.228 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.094 4.094 11 C -0.124 4.124 12 Cl -0.051 7.051 13 C 0.217 3.783 14 O -0.510 6.510 15 N -0.192 5.192 16 C -0.470 4.470 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.552 5.552 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.190 1.190 23 H -0.198 1.198 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.175 0.825 33 H 0.235 0.765 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.230 5.161 -3.585 18.340 hybrid contribution 1.212 -0.389 0.229 1.293 sum -16.018 4.772 -3.356 17.048 Atomic orbital electron populations 1.21879 0.92248 1.03499 1.02463 1.21966 0.98852 0.92653 1.03548 1.22276 0.91635 0.96144 0.87360 0.86885 1.86259 1.42629 1.58387 1.33690 1.19225 0.87787 0.91424 0.94670 1.21618 0.98612 1.05364 0.97252 1.21478 0.94469 0.92726 0.99856 1.21452 1.01382 1.01435 0.91758 1.21237 0.91484 0.95911 1.00740 1.20591 0.98936 1.04871 0.88043 1.98356 1.72653 1.97738 1.36363 1.20554 0.90187 0.83859 0.83736 1.90529 1.66351 1.51352 1.42804 1.41746 1.07173 1.51088 1.19164 1.19632 0.82617 1.38131 1.06610 0.90479 1.26009 1.04909 0.95239 0.94288 1.69639 1.37980 1.37557 1.09980 0.84998 0.76650 0.78720 0.78042 1.19757 1.18984 1.19802 0.93178 0.90412 0.90374 0.92178 0.89207 0.83286 0.81675 0.81375 0.82538 0.76494 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.48 71.98 0.61 -2.66 16 2 C -0.13 -4.11 5.59 30.60 0.17 -3.94 16 3 C 0.09 3.21 2.54 29.85 0.08 3.28 16 4 H 0.11 3.60 5.43 -2.39 -0.01 3.59 16 5 O -0.30 -11.76 8.57 -73.64 -0.63 -12.39 16 6 C 0.12 3.66 5.65 22.52 0.13 3.79 16 7 C -0.21 -5.01 7.36 22.36 0.16 -4.85 16 8 C -0.07 -1.14 10.04 22.26 0.22 -0.92 16 9 C -0.14 -2.24 10.04 22.28 0.22 -2.02 16 10 C -0.08 -1.57 9.83 22.27 0.22 -1.35 16 11 C -0.10 -2.87 6.33 22.41 0.14 -2.72 16 12 Cl -0.08 -2.60 28.50 -2.72 -0.08 -2.67 16 13 C 0.43 21.71 7.18 87.66 0.63 22.33 16 14 O -0.62 -37.73 16.08 15.97 0.26 -37.48 16 15 N -0.55 -28.59 5.15 -306.97 -1.58 -30.17 16 16 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C 0.00 -0.18 5.50 84.92 0.47 0.29 16 19 N -0.91 -47.71 13.05 21.66 0.28 -47.43 16 20 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H 0.05 1.23 6.53 -2.39 -0.02 1.21 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.44 6.73 -2.39 -0.02 1.42 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.09 2.72 7.43 -2.39 -0.02 2.70 16 29 H 0.15 3.21 4.27 -2.91 -0.01 3.20 16 30 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.40 19.02 7.26 -92.71 -0.67 18.35 16 34 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -72.22 304.02 4.62 -67.60 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.47 Total: 25.44 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 3.87 Total: -7.39 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.30 Total: -77.60 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.37 Total: -49.87 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.67 kcal Total: -72.22 4.62 -67.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096451219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.308 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds