Wall clock time and date at job start Fri Apr 10 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 H 1.09002 * 109.47257 * 305.00128 * 3 2 1 5 5 O 1.42902 * 109.47033 * 65.00034 * 3 2 1 6 6 C 1.35925 * 116.99964 * 260.42938 * 5 3 2 7 7 C 1.38708 * 120.06067 * 5.67646 * 6 5 3 8 8 C 1.38155 * 119.95622 * 179.74592 * 7 6 5 9 9 C 1.38271 * 120.07810 * 0.51988 * 8 7 6 10 10 C 1.38251 * 120.11744 * 359.72847 * 9 8 7 11 11 C 1.38251 * 120.04158 * 0.02562 * 10 9 8 12 12 Cl 1.73604 * 120.03519 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47280 * 185.00113 * 3 2 1 14 14 O 1.21291 * 119.99749 * 245.00190 * 13 3 2 15 15 N 1.34772 * 120.00065 * 64.99851 * 13 3 2 16 16 C 1.37098 * 120.00161 * 179.72272 * 15 13 3 17 17 H 1.08005 * 119.99505 * 0.28187 * 16 15 13 18 18 C 1.38952 * 120.00228 * 180.27710 * 16 15 13 19 19 N 1.31413 * 119.99570 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47154 * 59.99985 * 20 18 16 22 22 H 1.48497 * 109.47183 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47403 * 300.00155 * 20 18 16 24 24 H 1.09004 * 109.47494 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47483 * 299.99782 * 1 2 3 26 26 H 1.08997 * 109.47193 * 60.00162 * 1 2 3 27 27 H 1.09004 * 109.47057 * 240.00286 * 2 1 3 28 28 H 1.09004 * 109.47033 * 120.00173 * 2 1 3 29 29 H 1.08002 * 120.01767 * 359.97438 * 7 6 5 30 30 H 1.07997 * 119.95762 * 180.25073 * 8 7 6 31 31 H 1.08003 * 119.94302 * 179.75167 * 9 8 7 32 32 H 1.08008 * 119.97722 * 179.97438 * 10 9 8 33 33 H 0.97003 * 120.00090 * 0.02562 * 15 13 3 34 34 H 0.97001 * 119.99467 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0813 1.2211 6 6 0.5683 2.8875 1.1828 7 6 -0.1951 2.9686 0.0275 8 6 -1.3093 3.7847 -0.0073 9 6 -1.6582 4.5289 1.1046 10 6 -0.8966 4.4544 2.2561 11 6 0.2164 3.6355 2.2980 12 17 1.1729 3.5426 3.7438 13 6 3.5419 1.4443 -0.1239 14 8 4.2250 1.8611 0.7876 15 7 4.1260 0.9827 -1.2473 16 6 5.4921 0.9897 -1.3623 17 1 6.1004 1.3608 -0.5507 18 6 6.0941 0.5192 -2.5229 19 7 5.3538 0.0680 -3.5106 20 14 7.9555 0.5280 -2.6792 21 1 8.5465 -0.3087 -1.6040 22 1 8.3437 -0.0215 -4.0031 23 1 8.4562 1.9204 -2.5545 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.0793 2.3913 -0.8430 30 1 -1.9059 3.8448 -0.9055 31 1 -2.5273 5.1693 1.0737 32 1 -1.1710 5.0371 3.1232 33 1 3.5796 0.6497 -1.9764 34 1 5.7740 -0.2601 -4.3209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096451220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:42 Heat of formation + Delta-G solvation = -77.089346 kcal Electronic energy + Delta-G solvation = -19924.302871 eV Core-core repulsion = 16654.617130 eV Total energy + Delta-G solvation = -3269.685741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69026 -40.05033 -38.39809 -37.29073 -36.05719 -34.77784 -33.19222 -31.73008 -30.99656 -28.84958 -26.52472 -24.27444 -23.40252 -22.77383 -21.00721 -20.12048 -19.58456 -17.99271 -17.28057 -16.99385 -16.75128 -16.44725 -15.83411 -15.61778 -15.32362 -15.06262 -14.79148 -14.66330 -14.23612 -13.56798 -13.41808 -13.24974 -12.97270 -12.90339 -12.75806 -12.50619 -12.45142 -12.30421 -12.13522 -11.98622 -11.82844 -11.58289 -11.48054 -10.38035 -10.10124 -9.84588 -9.14412 -8.52267 -6.02154 0.17708 0.34937 1.24938 1.36364 1.40899 1.51059 1.87551 1.91194 2.32299 2.68088 3.09554 3.13236 3.60233 3.82261 3.86191 3.93304 4.14416 4.18664 4.33178 4.39126 4.48706 4.50771 4.76772 4.81107 5.01489 5.06084 5.16647 5.29685 5.32116 5.36243 5.46980 5.73258 5.89452 6.28236 6.52494 7.04436 7.41917 7.97764 8.64215 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.004443 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.514800 B = 6300.868865 C = 6801.815203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.085 3.915 4 H 0.113 0.887 5 O -0.297 6.297 6 C 0.115 3.885 7 C -0.210 4.210 8 C -0.067 4.067 9 C -0.142 4.142 10 C -0.075 4.075 11 C -0.097 4.097 12 Cl -0.080 7.080 13 C 0.430 3.570 14 O -0.623 6.623 15 N -0.554 5.554 16 C -0.341 4.341 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.912 5.912 20 Si 0.993 3.007 21 H -0.273 1.273 22 H -0.266 1.266 23 H -0.273 1.273 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.400 0.600 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.927 4.814 3.003 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.026 3.974 4 H 0.131 0.869 5 O -0.210 6.210 6 C 0.068 3.932 7 C -0.228 4.228 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.094 4.094 11 C -0.124 4.124 12 Cl -0.051 7.051 13 C 0.217 3.783 14 O -0.510 6.510 15 N -0.192 5.192 16 C -0.470 4.470 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.552 5.552 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.190 1.190 23 H -0.198 1.198 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.175 0.825 33 H 0.235 0.765 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.206 4.936 3.700 18.279 hybrid contribution 1.209 -0.353 -0.247 1.283 sum -15.998 4.584 3.453 16.996 Atomic orbital electron populations 1.21873 0.92236 1.03504 1.02461 1.21950 0.98831 0.92638 1.03534 1.22276 0.91631 0.96194 0.87321 0.86943 1.86265 1.42790 1.58244 1.33672 1.19227 0.87884 0.91343 0.94697 1.21619 0.98622 1.05391 0.97193 1.21476 0.94462 0.92731 0.99862 1.21454 1.01408 1.01368 0.91778 1.21239 0.91441 0.95984 1.00715 1.20592 0.98906 1.04704 0.88228 1.98357 1.72294 1.97783 1.36677 1.20550 0.90199 0.83795 0.83769 1.90528 1.66145 1.52940 1.41390 1.41739 1.07183 1.55058 1.15204 1.19628 0.82621 1.42106 1.02626 0.90486 1.26009 1.04900 0.95373 0.94159 1.69642 1.37941 1.41185 1.06383 0.84999 0.76657 0.78787 0.77971 1.19787 1.18982 1.19777 0.90399 0.93182 0.90385 0.89207 0.92201 0.83287 0.81679 0.81373 0.82534 0.76519 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.49 71.98 0.61 -2.65 16 2 C -0.13 -4.09 5.61 30.59 0.17 -3.92 16 3 C 0.09 3.20 2.53 29.85 0.08 3.28 16 4 H 0.11 3.58 5.42 -2.39 -0.01 3.57 16 5 O -0.30 -11.77 8.57 -73.71 -0.63 -12.40 16 6 C 0.11 3.64 5.65 22.52 0.13 3.77 16 7 C -0.21 -5.01 7.38 22.36 0.17 -4.85 16 8 C -0.07 -1.14 10.04 22.26 0.22 -0.92 16 9 C -0.14 -2.24 10.04 22.28 0.22 -2.02 16 10 C -0.08 -1.57 9.83 22.28 0.22 -1.35 16 11 C -0.10 -2.86 6.33 22.41 0.14 -2.72 16 12 Cl -0.08 -2.60 28.50 -2.72 -0.08 -2.68 16 13 C 0.43 21.71 7.13 87.66 0.63 22.33 16 14 O -0.62 -37.71 16.08 15.93 0.26 -37.46 16 15 N -0.55 -28.59 5.19 -306.98 -1.59 -30.19 16 16 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C 0.00 -0.18 5.50 84.93 0.47 0.29 16 19 N -0.91 -47.70 13.05 21.66 0.28 -47.42 16 20 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.23 6.55 -2.39 -0.02 1.21 16 26 H 0.08 1.43 6.74 -2.39 -0.02 1.42 16 27 H 0.09 2.71 7.77 -2.38 -0.02 2.70 16 28 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.15 3.22 4.29 -2.91 -0.01 3.21 16 30 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.40 19.02 7.60 -92.71 -0.70 18.31 16 34 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -72.22 304.77 4.57 -67.65 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.44 Total: 25.37 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 3.86 Total: -7.37 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.31 Total: -77.60 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -0.38 Total: -49.85 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -72.22 4.57 -67.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096451220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.439 kcal (2) G-P(sol) polarization free energy of solvation -72.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds