Wall clock time and date at job start Fri Apr 10 2020 14:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47319 * 2 1 4 4 C 1.38254 * 120.36485 * 124.99875 * 3 2 1 5 5 C 1.39411 * 118.52122 * 180.02562 * 4 3 2 6 6 O 1.35512 * 120.46405 * 180.02562 * 5 4 3 7 7 N 1.32744 * 119.07312 * 0.02562 * 5 4 3 8 8 C 1.32529 * 120.64096 * 359.97438 * 7 5 4 9 9 S 1.76195 * 119.19409 * 179.97438 * 8 7 5 10 10 C 1.80996 * 99.99998 * 359.97438 * 9 8 7 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 8 12 12 O 1.21297 * 119.99667 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.37095 * 119.99878 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00160 * 359.97438 * 14 13 11 16 16 C 1.38950 * 120.00380 * 179.97438 * 14 13 11 17 17 N 1.31404 * 120.00261 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99599 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47644 * 89.99834 * 18 16 14 20 20 H 1.48506 * 109.47143 * 209.99780 * 18 16 14 21 21 H 1.48501 * 109.47120 * 329.99495 * 18 16 14 22 22 N 1.32419 * 120.36170 * 305.28206 * 3 2 1 23 23 H 1.09004 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46897 * 299.99626 * 1 2 3 25 25 H 1.08992 * 109.47440 * 59.99911 * 1 2 3 26 26 H 1.09005 * 109.46897 * 240.00374 * 2 1 3 27 27 H 1.09001 * 109.47393 * 120.00258 * 2 1 3 28 28 H 1.08001 * 120.74250 * 0.05244 * 4 3 2 29 29 H 0.96698 * 114.00289 * 269.98363 * 6 5 4 30 30 H 1.09001 * 109.47654 * 60.00189 * 10 9 8 31 31 H 1.08998 * 109.47543 * 300.00143 * 10 9 8 32 32 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 33 33 H 0.97009 * 120.00065 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9104 1.8516 0.9772 5 6 3.3503 3.1740 0.9407 6 8 4.2114 3.6377 1.8787 7 7 2.9137 3.9726 -0.0256 8 6 2.0718 3.5227 -0.9449 9 16 1.5162 4.6160 -2.2100 10 6 2.3994 6.1223 -1.7339 11 6 2.0678 7.2270 -2.7040 12 8 1.3093 7.0163 -3.6268 13 7 2.6101 8.4503 -2.5432 14 6 2.3080 9.4553 -3.4254 15 1 1.6358 9.2666 -4.2494 16 6 2.8666 10.7167 -3.2595 17 7 2.5774 11.6798 -4.1053 18 14 4.0299 11.0429 -1.8347 19 1 5.4237 10.7538 -2.2574 20 1 3.9224 12.4658 -1.4237 21 1 3.6682 10.1684 -0.6903 22 7 1.6333 2.2718 -0.9327 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 3.2484 1.1786 1.7513 29 1 3.7794 4.0134 2.6580 30 1 3.4730 5.9348 -1.7507 31 1 2.0980 6.4181 -0.7291 32 1 3.2135 8.6199 -1.8030 33 1 2.9678 12.5604 -3.9897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436194422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:03 Heat of formation + Delta-G solvation = -59.076977 kcal Electronic energy + Delta-G solvation = -18872.941890 eV Core-core repulsion = 15638.373681 eV Total energy + Delta-G solvation = -3234.568209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.13890 -40.34604 -38.72082 -36.17227 -35.98464 -33.89443 -33.07550 -31.84457 -31.04778 -26.70320 -25.89299 -25.75510 -22.91754 -21.62428 -20.71172 -19.86348 -18.87154 -18.29129 -17.83897 -17.00755 -16.76583 -16.56200 -16.32876 -15.74567 -15.38758 -15.23030 -14.90993 -14.79406 -14.62651 -13.96269 -13.89842 -13.43679 -13.08478 -12.98421 -12.48170 -12.47624 -12.19947 -12.03739 -12.01526 -11.61313 -11.45327 -11.33304 -10.98412 -10.75483 -10.44070 -10.35530 -8.90018 -8.47486 -6.10108 -0.38303 -0.10071 0.02499 0.94626 1.28319 1.31916 1.42289 1.74017 2.18611 2.29321 2.52869 2.73700 3.07385 3.09808 3.49011 3.92711 3.97711 4.06148 4.11642 4.21724 4.33118 4.37093 4.48379 4.75898 5.03192 5.10753 5.19602 5.43183 5.44634 5.81917 5.84754 6.44816 6.48970 6.74591 6.76035 7.23807 7.74395 8.69183 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027836 B = 0.003774 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.634123 B = 7417.911917 C = 8339.342332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C 0.193 3.807 4 C -0.239 4.239 5 C 0.366 3.634 6 O -0.478 6.478 7 N -0.573 5.573 8 C 0.301 3.699 9 S 0.059 5.941 10 C -0.118 4.118 11 C 0.462 3.538 12 O -0.609 6.609 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.062 0.938 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.960 3.040 19 H -0.256 1.256 20 H -0.270 1.270 21 H -0.233 1.233 22 N -0.526 5.526 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.191 0.809 29 H 0.429 0.571 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.392 0.608 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 -22.694 18.958 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C 0.046 3.954 4 C -0.266 4.266 5 C 0.177 3.823 6 O -0.289 6.289 7 N -0.303 5.303 8 C -0.075 4.075 9 S 0.294 5.706 10 C -0.270 4.270 11 C 0.248 3.752 12 O -0.494 6.494 13 N -0.213 5.213 14 C -0.463 4.463 15 H 0.080 0.920 16 C -0.207 4.207 17 N -0.564 5.564 18 Si 0.780 3.220 19 H -0.180 1.180 20 H -0.195 1.195 21 H -0.156 1.156 22 N -0.246 5.246 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.138 0.862 28 H 0.208 0.792 29 H 0.293 0.707 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.228 0.772 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.158 -22.272 16.289 27.677 hybrid contribution 1.417 0.908 2.183 2.756 sum 3.575 -21.364 18.472 28.468 Atomic orbital electron populations 1.21668 0.93679 1.03088 1.01752 1.20747 0.97235 0.87027 1.05772 1.22383 0.89104 0.97145 0.86798 1.23020 1.01675 0.97443 1.04478 1.19719 0.85380 0.89201 0.88019 1.84686 1.31822 1.81363 1.31072 1.68338 1.14616 1.40851 1.06514 1.25066 0.92281 0.93831 0.96296 1.86823 1.55742 1.00648 1.27340 1.23458 1.06190 0.94139 1.03196 1.19743 0.84288 0.83783 0.87384 1.90593 1.40276 1.82424 1.36151 1.41857 1.43212 1.09019 1.27218 1.19049 1.28585 0.90179 1.08442 0.91972 1.26079 0.99388 0.94091 1.01131 1.69781 1.44672 1.03654 1.38334 0.85428 0.78718 0.79518 0.78343 1.18041 1.19508 1.15607 1.68289 1.27547 1.02026 1.26741 0.89757 0.92976 0.93677 0.88568 0.86169 0.79221 0.70723 0.85312 0.84970 0.77151 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.78 71.98 0.70 -1.11 16 2 C -0.07 -0.79 6.36 29.85 0.19 -0.60 16 3 C 0.19 3.71 6.20 42.47 0.26 3.98 16 4 C -0.24 -3.81 9.75 22.56 0.22 -3.59 16 5 C 0.37 7.67 7.83 84.84 0.66 8.34 16 6 O -0.48 -7.54 13.57 -88.14 -1.20 -8.73 16 7 N -0.57 -15.89 9.16 -309.33 -2.83 -18.72 16 8 C 0.30 9.16 7.85 180.43 1.42 10.58 16 9 S 0.06 2.09 21.38 -56.49 -1.21 0.89 16 10 C -0.12 -4.11 5.29 71.24 0.38 -3.73 16 11 C 0.46 21.61 7.80 87.66 0.68 22.29 16 12 O -0.61 -34.21 15.44 -3.08 -0.05 -34.26 16 13 N -0.57 -27.47 5.09 -306.98 -1.56 -29.04 16 14 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 15 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 16 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 17 N -0.92 -55.13 13.96 21.66 0.30 -54.82 16 18 Si 0.96 38.51 27.74 68.60 1.90 40.41 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 22 N -0.53 -14.44 9.98 -184.71 -1.84 -16.28 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.04 0.81 7.97 -2.39 -0.02 0.79 16 26 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.12 0.52 7.93 -2.39 -0.02 0.50 16 28 H 0.19 1.41 8.00 -2.91 -0.02 1.38 16 29 H 0.43 2.20 9.06 -74.06 -0.67 1.53 16 30 H 0.13 4.03 8.11 -2.39 -0.02 4.01 16 31 H 0.13 4.00 8.11 -2.40 -0.02 3.99 16 32 H 0.39 15.67 5.76 -92.71 -0.53 15.14 16 33 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -80.06 308.64 -0.74 -80.80 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.09 Total: 22.16 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.84 Total: 17.61 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -5.94 Total: -118.86 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.24 Total: -42.99 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.21 Total: 0.89 kcal Total: -80.06 -0.74 -80.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436194422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.718 kcal (2) G-P(sol) polarization free energy of solvation -80.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds