Wall clock time and date at job start Fri Apr 10 2020 14:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47077 * 143.19483 * 3 2 1 5 5 C 1.37097 * 120.00151 * 95.84435 * 4 3 2 6 6 H 1.08008 * 119.99792 * 162.32945 * 5 4 3 7 7 C 1.38948 * 120.00181 * 342.33235 * 5 4 3 8 8 N 1.31411 * 119.99637 * 338.88042 * 7 5 4 9 9 Si 1.86792 * 120.00040 * 158.88317 * 7 5 4 10 10 H 1.48503 * 109.47232 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47466 * 299.99936 * 9 7 5 12 12 H 1.48506 * 109.47485 * 59.99666 * 9 7 5 13 13 C 1.34779 * 119.99844 * 275.84705 * 4 3 2 14 14 O 1.21287 * 120.00328 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99899 * 359.97438 * 13 4 3 16 16 H 1.09004 * 109.54978 * 29.81060 * 15 13 4 17 17 C 1.53039 * 109.54858 * 150.00079 * 15 13 4 18 18 C 1.52591 * 109.98505 * 183.50738 * 17 15 13 19 19 C 1.52585 * 110.64029 * 290.01233 * 18 17 15 20 20 C 1.53032 * 109.98601 * 69.98995 * 19 18 17 21 21 S 1.81662 * 109.55406 * 269.51760 * 15 13 4 22 22 O 1.42101 * 108.66532 * 300.17957 * 21 15 13 23 23 O 1.42111 * 108.66123 * 71.51645 * 21 15 13 24 24 H 4.40638 * 5.51460 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47605 * 23.19008 * 3 2 1 26 26 H 1.09002 * 109.47469 * 263.18933 * 3 2 1 27 27 H 0.97003 * 119.99521 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.38254 * 303.66407 * 17 15 13 29 29 H 1.08994 * 109.38778 * 63.34975 * 17 15 13 30 30 H 1.08997 * 109.24390 * 50.31427 * 18 17 15 31 31 H 1.08996 * 109.24085 * 169.71456 * 18 17 15 32 32 H 1.09005 * 109.38380 * 190.14632 * 19 18 17 33 33 H 1.09002 * 109.38788 * 309.82946 * 19 18 17 34 34 H 1.08997 * 109.55390 * 56.20350 * 20 19 18 35 35 H 1.08999 * 109.55175 * 176.39787 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1068 -0.8275 5 6 3.4757 2.2998 -0.2449 6 1 4.0911 3.0063 -0.7821 7 6 3.0307 2.5999 1.0368 8 7 1.9816 1.9808 1.5297 9 14 3.9236 3.8832 2.0589 10 1 3.2557 4.0176 3.3784 11 1 5.3342 3.4638 2.2580 12 1 3.8907 5.1892 1.3527 13 6 3.2464 0.9516 -2.1616 14 8 3.6507 1.8672 -2.8467 15 6 2.8710 -0.3599 -2.8019 16 1 2.0869 -0.8403 -2.2166 17 6 2.3670 -0.1092 -4.2250 18 6 1.9024 -1.4204 -4.8523 19 6 3.0927 -2.3313 -5.1381 20 6 3.6834 -2.8478 -3.8243 21 16 4.3290 -1.4412 -2.8729 22 8 5.3362 -0.7968 -3.6406 23 8 4.6317 -1.8832 -1.5566 24 1 -1.0502 -0.0001 0.0003 25 1 3.0098 -0.9437 -0.4046 26 1 3.0093 0.1227 1.0204 27 1 1.6712 2.1900 2.4246 28 1 1.5337 0.5929 -4.1953 29 1 3.1728 0.3134 -4.8251 30 1 1.2205 -1.9244 -4.1675 31 1 1.3810 -1.2072 -5.7854 32 1 2.7645 -3.1759 -5.7440 33 1 3.8540 -1.7720 -5.6820 34 1 2.9073 -3.3520 -3.2486 35 1 4.4917 -3.5472 -4.0378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281470349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:56 Heat of formation + Delta-G solvation = -37.639710 kcal Electronic energy + Delta-G solvation = -21688.472226 eV Core-core repulsion = 18395.229377 eV Total energy + Delta-G solvation = -3293.242849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.04826 -37.14614 -36.27498 -35.64960 -35.26565 -32.45646 -31.51116 -31.30882 -28.01926 -26.51692 -25.01747 -23.43338 -20.89089 -19.74819 -18.40282 -18.00094 -16.96531 -16.71116 -16.22803 -16.14820 -15.28215 -15.05016 -14.61332 -14.16910 -13.95290 -13.74579 -13.51133 -12.94255 -12.77008 -12.44478 -12.34780 -11.79967 -11.74237 -11.64308 -11.58966 -11.36438 -11.23130 -11.01644 -10.83040 -10.62498 -10.44938 -10.34507 -9.89284 -9.47962 -9.39088 -9.00133 -8.60070 -8.01709 -6.49697 -3.96726 0.17291 2.91385 3.11769 3.20069 3.23800 3.49867 3.70401 3.90343 3.97587 4.06711 4.14232 4.51366 4.56951 4.69635 4.85069 4.92054 4.94680 5.09154 5.32429 5.38254 5.43666 5.53336 5.68598 5.76638 5.86515 6.00885 6.17397 6.28198 6.41217 6.70847 6.92378 7.41463 7.84840 8.24869 8.69051 8.95171 9.15063 9.69697 10.49943 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.006556 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.369132 B = 4269.710364 C = 4573.804647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.118 4.118 3 C 0.214 3.786 4 N -0.418 5.418 5 C -0.308 4.308 6 H 0.111 0.889 7 C 0.033 3.967 8 N -0.848 5.848 9 Si 0.928 3.072 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.270 1.270 13 C 0.452 3.548 14 O -0.560 6.560 15 C -0.570 4.570 16 H 0.142 0.858 17 C -0.087 4.087 18 C -0.140 4.140 19 C -0.109 4.109 20 C -0.612 4.612 21 S 2.399 3.601 22 O -0.925 6.925 23 O -0.938 6.938 24 H 0.201 0.799 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.274 0.726 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 -10.664 -7.124 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.119 4.119 3 C 0.091 3.909 4 N -0.136 5.136 5 C -0.437 4.437 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.486 5.486 9 Si 0.754 3.246 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.195 1.195 13 C 0.238 3.762 14 O -0.444 6.444 15 C -0.681 4.681 16 H 0.160 0.840 17 C -0.126 4.126 18 C -0.177 4.177 19 C -0.147 4.147 20 C -0.740 4.740 21 S 2.580 3.420 22 O -0.922 6.922 23 O -0.935 6.935 24 H 0.219 0.781 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.641 -10.128 -6.946 12.390 hybrid contribution -0.955 0.295 0.580 1.156 sum -2.597 -9.833 -6.366 11.998 Atomic orbital electron populations 1.24297 0.95325 1.03823 1.03876 1.23136 0.94259 0.97081 0.97442 1.18601 0.84347 0.88897 0.99090 1.43790 1.53738 1.12356 1.03724 1.19831 1.29505 0.95988 0.98382 0.87088 1.25413 0.95067 0.98846 0.98046 1.70085 1.19138 1.41762 1.17567 0.85956 0.79750 0.80470 0.78426 1.20769 1.19425 1.19547 1.18654 0.87499 0.87521 0.82557 1.90569 1.51223 1.41494 1.61077 1.30216 1.20231 1.11776 1.05910 0.84011 1.21114 1.03606 0.97778 0.90104 1.21749 0.97944 0.95561 1.02483 1.21278 0.98591 1.00395 0.94452 1.30335 1.12516 1.19785 1.11397 1.09447 0.78412 0.77930 0.76167 1.93561 1.53254 1.73414 1.71970 1.93550 1.82789 1.81128 1.35995 0.78145 0.90513 0.86528 0.91585 0.89390 0.89022 0.90814 0.89721 0.89890 0.89744 0.85100 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.05 19.25 29.55 0.57 -4.48 16 2 C -0.12 -2.59 10.54 -37.13 -0.39 -2.99 16 3 C 0.21 4.91 4.78 -6.83 -0.03 4.87 16 4 N -0.42 -10.77 2.60 -117.94 -0.31 -11.08 16 5 C -0.31 -8.48 9.32 -14.93 -0.14 -8.61 16 6 H 0.11 3.17 7.39 -52.48 -0.39 2.78 16 7 C 0.03 0.84 4.87 -17.47 -0.09 0.76 16 8 N -0.85 -21.77 9.46 55.50 0.53 -21.24 16 9 Si 0.93 20.18 29.60 -169.99 -5.03 15.15 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 13 C 0.45 11.09 6.62 -10.98 -0.07 11.02 16 14 O -0.56 -15.52 15.90 5.55 0.09 -15.44 16 15 C -0.57 -10.41 1.95 -27.86 -0.05 -10.46 16 16 H 0.14 2.31 5.95 -51.93 -0.31 2.00 16 17 C -0.09 -1.33 4.55 -26.92 -0.12 -1.46 16 18 C -0.14 -1.47 5.63 -27.15 -0.15 -1.62 16 19 C -0.11 -1.08 5.73 -26.93 -0.15 -1.24 16 20 C -0.61 -6.70 6.35 37.17 0.24 -6.46 16 21 S 2.40 41.26 4.67 -107.50 -0.50 40.76 16 22 O -0.93 -19.07 17.92 -57.81 -1.04 -20.11 16 23 O -0.94 -18.29 16.11 -57.81 -0.93 -19.23 16 24 H 0.20 3.17 7.80 -54.08 -0.42 2.74 16 25 H 0.08 1.56 4.77 -51.93 -0.25 1.31 16 26 H 0.12 2.81 6.44 -51.93 -0.33 2.47 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 30 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 34 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -34.25 302.50 -7.23 -41.47 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.19 Total: 5.82 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.40 Total: -20.67 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.22 Total: -32.32 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -1.88 Total: -54.77 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Atomic # 16 Polarization: 41.26 SS G_CDS: -0.50 Total: 40.76 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.25 -7.23 -41.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281470349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.835 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds