Wall clock time and date at job start Fri Apr 10 2020 14:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47077 * 143.19483 * 3 2 1 5 5 C 1.37097 * 120.00151 * 95.84435 * 4 3 2 6 6 H 1.08008 * 119.99792 * 162.32945 * 5 4 3 7 7 C 1.38948 * 120.00181 * 342.33235 * 5 4 3 8 8 N 1.31411 * 119.99637 * 338.88042 * 7 5 4 9 9 Si 1.86792 * 120.00040 * 158.88317 * 7 5 4 10 10 H 1.48503 * 109.47232 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47466 * 299.99936 * 9 7 5 12 12 H 1.48506 * 109.47485 * 59.99666 * 9 7 5 13 13 C 1.34779 * 119.99844 * 275.84705 * 4 3 2 14 14 O 1.21287 * 120.00328 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99899 * 359.97438 * 13 4 3 16 16 H 1.09004 * 109.54978 * 29.81060 * 15 13 4 17 17 C 1.53039 * 109.54858 * 150.00079 * 15 13 4 18 18 C 1.52591 * 109.98505 * 183.50738 * 17 15 13 19 19 C 1.52585 * 110.64029 * 290.01233 * 18 17 15 20 20 C 1.53032 * 109.98601 * 69.98995 * 19 18 17 21 21 S 1.81662 * 109.55406 * 269.51760 * 15 13 4 22 22 O 1.42101 * 108.66532 * 300.17957 * 21 15 13 23 23 O 1.42111 * 108.66123 * 71.51645 * 21 15 13 24 24 H 4.40638 * 5.51460 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47605 * 23.19008 * 3 2 1 26 26 H 1.09002 * 109.47469 * 263.18933 * 3 2 1 27 27 H 0.97003 * 119.99521 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.38254 * 303.66407 * 17 15 13 29 29 H 1.08994 * 109.38778 * 63.34975 * 17 15 13 30 30 H 1.08997 * 109.24390 * 50.31427 * 18 17 15 31 31 H 1.08996 * 109.24085 * 169.71456 * 18 17 15 32 32 H 1.09005 * 109.38380 * 190.14632 * 19 18 17 33 33 H 1.09002 * 109.38788 * 309.82946 * 19 18 17 34 34 H 1.08997 * 109.55390 * 56.20350 * 20 19 18 35 35 H 1.08999 * 109.55175 * 176.39787 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1068 -0.8275 5 6 3.4757 2.2998 -0.2449 6 1 4.0911 3.0063 -0.7821 7 6 3.0307 2.5999 1.0368 8 7 1.9816 1.9808 1.5297 9 14 3.9236 3.8832 2.0589 10 1 3.2557 4.0176 3.3784 11 1 5.3342 3.4638 2.2580 12 1 3.8907 5.1892 1.3527 13 6 3.2464 0.9516 -2.1616 14 8 3.6507 1.8672 -2.8467 15 6 2.8710 -0.3599 -2.8019 16 1 2.0869 -0.8403 -2.2166 17 6 2.3670 -0.1092 -4.2250 18 6 1.9024 -1.4204 -4.8523 19 6 3.0927 -2.3313 -5.1381 20 6 3.6834 -2.8478 -3.8243 21 16 4.3290 -1.4412 -2.8729 22 8 5.3362 -0.7968 -3.6406 23 8 4.6317 -1.8832 -1.5566 24 1 -1.0502 -0.0001 0.0003 25 1 3.0098 -0.9437 -0.4046 26 1 3.0093 0.1227 1.0204 27 1 1.6712 2.1900 2.4246 28 1 1.5337 0.5929 -4.1953 29 1 3.1728 0.3134 -4.8251 30 1 1.2205 -1.9244 -4.1675 31 1 1.3810 -1.2072 -5.7854 32 1 2.7645 -3.1759 -5.7440 33 1 3.8540 -1.7720 -5.6820 34 1 2.9073 -3.3520 -3.2486 35 1 4.4917 -3.5472 -4.0378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281470349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:55 Heat of formation + Delta-G solvation = -63.744074 kcal Electronic energy + Delta-G solvation = -21689.604196 eV Core-core repulsion = 18395.229377 eV Total energy + Delta-G solvation = -3294.374819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85253 -38.47466 -37.55571 -37.14395 -37.07890 -34.24675 -33.15761 -32.75114 -29.26872 -28.24874 -26.72335 -24.73787 -21.88639 -21.44113 -19.84986 -19.73690 -18.66437 -18.33119 -17.72453 -17.57663 -16.77765 -16.58970 -16.14030 -15.73479 -15.43763 -14.87192 -14.86214 -14.36351 -14.31639 -14.16422 -13.81289 -13.56603 -13.24242 -13.12054 -12.86373 -12.75666 -12.62164 -12.47442 -12.24517 -12.17526 -11.76410 -11.53839 -11.28311 -11.22573 -11.11794 -10.73457 -10.45747 -9.96003 -8.43725 -6.04581 -1.11772 1.30849 1.38381 1.48334 1.58216 1.76886 2.02260 2.24592 2.28434 2.55139 2.84531 2.95651 3.03500 3.47507 3.64189 3.74285 3.78423 3.81696 4.04244 4.15081 4.35550 4.56022 4.60593 4.70086 4.86759 4.89386 5.01406 5.16140 5.19940 5.34855 5.36638 5.38262 5.89341 6.28272 6.98384 7.06233 7.22650 7.77538 8.54762 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.006556 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.369132 B = 4269.710364 C = 4573.804647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.167 4.167 3 C 0.217 3.783 4 N -0.437 5.437 5 C -0.364 4.364 6 H 0.079 0.921 7 C 0.006 3.994 8 N -0.861 5.861 9 Si 0.988 3.012 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.275 1.275 13 C 0.439 3.561 14 O -0.610 6.610 15 C -0.577 4.577 16 H 0.162 0.838 17 C -0.089 4.089 18 C -0.134 4.134 19 C -0.116 4.116 20 C -0.561 4.561 21 S 2.385 3.615 22 O -0.973 6.973 23 O -0.971 6.971 24 H 0.242 0.758 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.278 0.722 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -14.195 -8.316 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.168 4.168 3 C 0.095 3.905 4 N -0.155 5.155 5 C -0.491 4.491 6 H 0.097 0.903 7 C -0.199 4.199 8 N -0.496 5.496 9 Si 0.810 3.190 10 H -0.188 1.188 11 H -0.194 1.194 12 H -0.200 1.200 13 C 0.227 3.773 14 O -0.497 6.497 15 C -0.686 4.686 16 H 0.180 0.820 17 C -0.128 4.128 18 C -0.171 4.171 19 C -0.155 4.155 20 C -0.696 4.696 21 S 2.571 3.429 22 O -0.970 6.970 23 O -0.968 6.968 24 H 0.259 0.741 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.095 0.905 34 H 0.192 0.808 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.690 -13.576 -8.041 16.205 hybrid contribution -0.367 1.207 0.754 1.470 sum -4.057 -12.369 -7.287 14.918 Atomic orbital electron populations 1.25213 0.96150 1.01349 1.01330 1.23182 0.94555 0.99341 0.99765 1.18514 0.85580 0.88769 0.97623 1.43943 1.54448 1.12441 1.04635 1.19681 1.32152 0.97234 1.00077 0.90303 1.26079 0.95302 1.00536 0.97956 1.70150 1.19291 1.42459 1.17740 0.85102 0.78699 0.77824 0.77364 1.18839 1.19394 1.20003 1.19674 0.85709 0.89623 0.82247 1.90506 1.52824 1.44135 1.62250 1.30277 1.22001 1.08988 1.07344 0.82022 1.21221 1.02286 1.00976 0.88278 1.21803 0.98793 0.92638 1.03890 1.21512 0.98092 1.01905 0.93953 1.30042 1.14650 1.14408 1.10456 1.09181 0.77622 0.79755 0.76381 1.93513 1.55070 1.76012 1.72411 1.93510 1.83160 1.81406 1.38722 0.74145 0.88587 0.88774 0.91213 0.90865 0.91231 0.88282 0.86967 0.84756 0.90505 0.80831 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.38 19.25 74.32 1.43 -6.95 16 2 C -0.17 -7.36 10.54 31.12 0.33 -7.03 16 3 C 0.22 10.39 4.78 84.57 0.40 10.79 16 4 N -0.44 -24.01 2.60 -645.42 -1.68 -25.68 16 5 C -0.36 -21.62 9.32 84.04 0.78 -20.84 16 6 H 0.08 5.00 7.39 -2.91 -0.02 4.98 16 7 C 0.01 0.35 4.87 84.93 0.41 0.76 16 8 N -0.86 -45.40 9.46 21.66 0.21 -45.20 16 9 Si 0.99 43.15 29.60 68.60 2.03 45.18 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.44 22.97 6.62 87.66 0.58 23.55 16 14 O -0.61 -36.77 15.90 -3.05 -0.05 -36.82 16 15 C -0.58 -21.18 1.95 29.86 0.06 -21.13 16 16 H 0.16 5.11 5.95 -2.39 -0.01 5.09 16 17 C -0.09 -2.66 4.55 30.47 0.14 -2.52 16 18 C -0.13 -2.16 5.63 30.32 0.17 -1.99 16 19 C -0.12 -1.59 5.73 30.47 0.17 -1.42 16 20 C -0.56 -8.89 6.35 71.99 0.46 -8.43 16 21 S 2.38 80.09 4.67 -56.49 -0.26 79.83 16 22 O -0.97 -41.20 17.92 -127.40 -2.28 -43.48 16 23 O -0.97 -37.85 16.11 -127.40 -2.05 -39.91 16 24 H 0.24 6.65 7.80 -4.41 -0.03 6.62 16 25 H 0.10 4.03 4.77 -2.39 -0.01 4.02 16 26 H 0.09 4.81 6.44 -2.39 -0.02 4.79 16 27 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 2.35 7.84 -2.39 -0.02 2.33 16 30 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 34 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.17 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -84.69 302.50 1.95 -82.74 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.10 Total: 18.53 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 4.94 Total: -35.19 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.47 Total: -70.88 kcal Atomic # 8 Polarization: -115.82 SS G_CDS: -4.38 Total: -120.21 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 80.09 SS G_CDS: -0.26 Total: 79.83 kcal Total: -84.69 1.95 -82.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281470349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.996 kcal (2) G-P(sol) polarization free energy of solvation -84.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds