Wall clock time and date at job start Fri Apr 10 2020 14:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00198 * 2 1 4 4 H 1.48500 * 109.47322 * 270.00350 * 3 2 1 5 5 H 1.48503 * 109.46893 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.47169 * 150.00032 * 3 2 1 7 7 C 1.38948 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99854 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99978 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99686 * 179.97438 * 10 9 7 13 13 O 1.45195 * 109.47285 * 180.02562 * 12 10 9 14 14 C 1.34798 * 117.00559 * 180.02562 * 13 12 10 15 15 O 1.21540 * 119.99501 * 0.02562 * 14 13 12 16 16 C 1.46953 * 120.00348 * 179.72361 * 14 13 12 17 17 C 1.33077 * 120.00098 * 188.51060 * 16 14 13 18 18 C 1.50659 * 119.83845 * 16.66470 * 17 16 14 19 19 C 1.53686 * 109.15143 * 117.48790 * 18 17 16 20 20 S 1.81621 * 108.98192 * 57.98409 * 19 18 17 21 21 C 1.81619 * 102.56273 * 303.38321 * 20 19 18 22 22 C 1.50657 * 119.84105 * 196.94479 * 17 16 14 23 23 H 0.96999 * 119.99998 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00019 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.46895 * 60.00496 * 12 10 9 26 26 H 1.09002 * 109.47784 * 300.00500 * 12 10 9 27 27 H 1.08001 * 119.99678 * 8.51098 * 16 14 13 28 28 H 1.08999 * 109.47931 * 237.48562 * 18 17 16 29 29 H 1.09002 * 109.47837 * 357.51807 * 18 17 16 30 30 H 1.09004 * 109.67072 * 298.06956 * 19 18 17 31 31 H 1.09008 * 109.54579 * 177.82177 * 19 18 17 32 32 H 1.09002 * 109.54378 * 296.63124 * 21 20 19 33 33 H 1.08997 * 109.62070 * 176.40634 * 21 20 19 34 34 H 1.09004 * 109.47448 * 2.48488 * 22 17 16 35 35 H 1.08998 * 109.48146 * 122.50000 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2102 -3.5578 -0.0022 12 6 1.2438 -4.8629 -0.0032 13 8 2.1872 -5.9666 -0.0037 14 6 1.6721 -7.2122 -0.0048 15 8 0.4671 -7.3714 -0.0058 16 6 2.5672 -8.3776 -0.0115 17 6 2.0679 -9.5992 -0.1832 18 6 0.6773 -9.7696 -0.7372 19 6 0.7565 -10.5203 -2.0759 20 16 1.5677 -12.1229 -1.8074 21 6 3.1571 -11.6427 -1.0714 22 6 2.8936 -10.8049 0.1834 23 1 -0.4850 0.8400 0.0004 24 1 0.3533 -2.3907 -0.0016 25 1 0.6168 -4.9200 -0.8931 26 1 0.6173 -4.9213 0.8869 27 1 3.6303 -8.2427 0.1229 28 1 0.0727 -10.3405 -0.0325 29 1 0.2258 -8.7899 -0.8935 30 1 1.3337 -9.9347 -2.7915 31 1 -0.2495 -10.6813 -2.4638 32 1 3.7285 -11.0543 -1.7893 33 1 3.7204 -12.5361 -0.8017 34 1 3.8428 -10.4795 0.6091 35 1 2.3541 -11.4060 0.9153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772132658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:30 Heat of formation + Delta-G solvation = -102.267322 kcal Electronic energy + Delta-G solvation = -19484.478343 eV Core-core repulsion = 16188.433031 eV Total energy + Delta-G solvation = -3296.045312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51033 -38.39363 -37.45218 -35.91023 -34.02121 -32.11886 -31.42958 -31.11708 -28.45243 -25.51897 -24.41953 -23.82085 -21.65041 -19.66223 -19.16493 -18.10109 -17.63957 -16.97221 -16.38352 -15.99929 -15.66613 -15.07597 -14.80922 -14.56064 -14.39120 -13.98985 -13.97061 -13.72108 -13.36156 -13.17514 -12.55100 -12.36553 -12.17826 -12.02626 -11.64689 -11.61594 -11.34922 -11.14495 -10.47144 -10.45153 -10.35236 -10.30742 -9.74051 -9.62216 -9.43335 -8.54479 -8.10210 -8.01710 -6.51731 -3.93814 0.79800 1.40188 2.17082 2.72354 2.83141 3.12024 3.22345 3.28562 3.71848 4.08507 4.20718 4.34458 4.49358 4.64988 4.72615 4.82454 4.90003 4.98030 5.11028 5.13232 5.25178 5.32924 5.43747 5.49258 5.56526 5.66891 5.78812 5.98867 6.04910 6.16060 6.71025 7.46177 7.80217 7.93911 8.46688 9.05380 9.37407 9.87336 10.65529 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.050429 B = 0.002651 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.104059 B =10560.128648 C =10831.860352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.320 6.320 14 C 0.493 3.507 15 O -0.510 6.510 16 C -0.185 4.185 17 C -0.036 4.036 18 C -0.135 4.135 19 C -0.073 4.073 20 S -0.271 6.271 21 C -0.080 4.080 22 C -0.091 4.091 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -21.127 -1.381 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.222 3.778 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.234 6.234 14 C 0.340 3.660 15 O -0.403 6.403 16 C -0.204 4.204 17 C -0.037 4.037 18 C -0.172 4.172 19 C -0.221 4.221 20 S -0.045 6.045 21 C -0.228 4.228 22 C -0.129 4.129 23 H 0.084 0.916 24 H 0.229 0.771 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.163 0.837 28 H 0.108 0.892 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.218 -21.988 -1.630 22.082 hybrid contribution 0.110 2.063 0.241 2.080 sum 1.328 -19.925 -1.389 20.018 Atomic orbital electron populations 1.69610 1.06011 1.28511 1.49645 1.25313 0.95689 0.99879 0.96867 0.85797 0.79239 0.80397 0.78513 1.20244 1.20790 1.19266 1.19728 0.93483 0.81754 1.48210 0.87616 1.41708 1.09370 1.04089 1.63815 1.19319 0.88338 0.84087 0.86008 1.90563 1.13432 1.86783 1.55239 1.22761 0.90849 0.84569 1.03531 1.86663 1.39956 1.14026 1.82719 1.21570 0.87393 0.84186 0.72805 1.90609 1.16666 1.85984 1.47087 1.21833 1.00094 0.89309 1.09128 1.22547 0.96474 0.93928 0.90737 1.21950 0.94174 1.06014 0.95072 1.23578 1.03907 0.94582 1.00071 1.86849 1.19918 1.15576 1.82129 1.23424 0.96627 1.03697 0.99097 1.21028 1.00480 0.94042 0.97371 0.91606 0.77149 0.89487 0.89445 0.83712 0.89182 0.84510 0.89694 0.87043 0.89388 0.87081 0.89126 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.93 5.29 -10.96 -0.06 -13.98 16 10 C 0.44 10.54 7.86 -10.99 -0.09 10.45 16 11 O -0.58 -16.05 16.08 -14.11 -0.23 -16.28 16 12 C 0.06 1.14 5.95 36.00 0.21 1.36 16 13 O -0.32 -5.93 9.77 -47.44 -0.46 -6.40 16 14 C 0.49 7.58 7.72 34.26 0.26 7.84 16 15 O -0.51 -8.23 13.04 -19.30 -0.25 -8.48 16 16 C -0.18 -2.14 9.68 -37.85 -0.37 -2.51 16 17 C -0.04 -0.35 5.06 -101.18 -0.51 -0.86 16 18 C -0.13 -1.36 5.37 -27.55 -0.15 -1.51 16 19 C -0.07 -0.65 6.50 37.51 0.24 -0.41 16 20 S -0.27 -2.45 22.23 -107.50 -2.39 -4.84 16 21 C -0.08 -0.55 6.48 37.24 0.24 -0.31 16 22 C -0.09 -0.63 5.87 -27.82 -0.16 -0.79 16 23 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 24 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 25 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.15 1.45 7.96 -52.49 -0.42 1.03 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.14 1.70 4.41 -54.27 -0.24 1.46 16 30 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.11 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -31.77 314.73 -7.78 -39.55 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.28 Total: 7.99 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.55 Total: 5.35 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.67 Total: -37.25 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.94 Total: -31.15 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.39 Total: -4.84 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.77 -7.78 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772132658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.713 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds