Wall clock time and date at job start Fri Apr 10 2020 14:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00198 * 2 1 4 4 H 1.48500 * 109.47322 * 270.00350 * 3 2 1 5 5 H 1.48503 * 109.46893 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.47169 * 150.00032 * 3 2 1 7 7 C 1.38948 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99854 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99978 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99686 * 179.97438 * 10 9 7 13 13 O 1.45195 * 109.47285 * 180.02562 * 12 10 9 14 14 C 1.34798 * 117.00559 * 180.02562 * 13 12 10 15 15 O 1.21540 * 119.99501 * 0.02562 * 14 13 12 16 16 C 1.46953 * 120.00348 * 179.72361 * 14 13 12 17 17 C 1.33077 * 120.00098 * 188.51060 * 16 14 13 18 18 C 1.50659 * 119.83845 * 16.66470 * 17 16 14 19 19 C 1.53686 * 109.15143 * 117.48790 * 18 17 16 20 20 S 1.81621 * 108.98192 * 57.98409 * 19 18 17 21 21 C 1.81619 * 102.56273 * 303.38321 * 20 19 18 22 22 C 1.50657 * 119.84105 * 196.94479 * 17 16 14 23 23 H 0.96999 * 119.99998 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00019 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.46895 * 60.00496 * 12 10 9 26 26 H 1.09002 * 109.47784 * 300.00500 * 12 10 9 27 27 H 1.08001 * 119.99678 * 8.51098 * 16 14 13 28 28 H 1.08999 * 109.47931 * 237.48562 * 18 17 16 29 29 H 1.09002 * 109.47837 * 357.51807 * 18 17 16 30 30 H 1.09004 * 109.67072 * 298.06956 * 19 18 17 31 31 H 1.09008 * 109.54579 * 177.82177 * 19 18 17 32 32 H 1.09002 * 109.54378 * 296.63124 * 21 20 19 33 33 H 1.08997 * 109.62070 * 176.40634 * 21 20 19 34 34 H 1.09004 * 109.47448 * 2.48488 * 22 17 16 35 35 H 1.08998 * 109.48146 * 122.50000 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2102 -3.5578 -0.0022 12 6 1.2438 -4.8629 -0.0032 13 8 2.1872 -5.9666 -0.0037 14 6 1.6721 -7.2122 -0.0048 15 8 0.4671 -7.3714 -0.0058 16 6 2.5672 -8.3776 -0.0115 17 6 2.0679 -9.5992 -0.1832 18 6 0.6773 -9.7696 -0.7372 19 6 0.7565 -10.5203 -2.0759 20 16 1.5677 -12.1229 -1.8074 21 6 3.1571 -11.6427 -1.0714 22 6 2.8936 -10.8049 0.1834 23 1 -0.4850 0.8400 0.0004 24 1 0.3533 -2.3907 -0.0016 25 1 0.6168 -4.9200 -0.8931 26 1 0.6173 -4.9213 0.8869 27 1 3.6303 -8.2427 0.1229 28 1 0.0727 -10.3405 -0.0325 29 1 0.2258 -8.7899 -0.8935 30 1 1.3337 -9.9347 -2.7915 31 1 -0.2495 -10.6813 -2.4638 32 1 3.7285 -11.0543 -1.7893 33 1 3.7204 -12.5361 -0.8017 34 1 3.8428 -10.4795 0.6091 35 1 2.3541 -11.4060 0.9153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772132658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:29 Heat of formation + Delta-G solvation = -121.403129 kcal Electronic energy + Delta-G solvation = -19485.308134 eV Core-core repulsion = 16188.433031 eV Total energy + Delta-G solvation = -3296.875103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.74691 -40.15521 -38.57389 -37.11005 -36.05066 -33.44115 -32.78974 -32.02083 -30.01172 -26.90524 -25.85693 -24.51528 -22.73407 -21.46311 -20.20128 -20.03016 -18.86880 -18.00838 -17.73841 -17.40730 -17.02183 -16.48148 -15.87961 -15.80758 -15.72683 -15.40600 -14.96891 -14.71234 -14.44864 -14.20034 -13.87097 -13.67645 -13.57697 -13.23966 -12.95359 -12.86110 -12.49331 -12.37913 -12.19134 -12.12467 -11.86111 -11.59438 -11.13697 -10.62612 -10.53920 -10.26622 -10.13707 -8.72256 -8.53968 -6.04785 -0.13491 0.75637 1.34860 1.37493 1.45568 1.53450 1.58569 1.74518 1.85839 2.29247 3.03710 3.11600 3.49311 3.57509 3.81724 3.90734 3.97500 4.10537 4.11617 4.14483 4.20193 4.24620 4.40353 4.62804 4.75506 4.79949 4.88200 4.94341 5.14276 5.25338 5.35372 5.61192 5.87573 6.44156 6.63764 7.01216 7.37867 7.91463 8.63107 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.050429 B = 0.002651 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.104059 B =10560.128648 C =10831.860352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.557 5.557 10 C 0.435 3.565 11 O -0.619 6.619 12 C 0.072 3.928 13 O -0.343 6.343 14 C 0.489 3.511 15 O -0.524 6.524 16 C -0.206 4.206 17 C -0.012 4.012 18 C -0.136 4.136 19 C -0.067 4.067 20 S -0.297 6.297 21 C -0.072 4.072 22 C -0.088 4.088 23 H 0.281 0.719 24 H 0.400 0.600 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.161 0.839 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -22.183 -1.240 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.506 6.506 12 C -0.005 4.005 13 O -0.258 6.258 14 C 0.338 3.662 15 O -0.417 6.417 16 C -0.225 4.225 17 C -0.013 4.013 18 C -0.174 4.174 19 C -0.215 4.215 20 S -0.071 6.071 21 C -0.220 4.220 22 C -0.127 4.127 23 H 0.091 0.909 24 H 0.235 0.765 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.179 0.821 28 H 0.113 0.887 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.482 -23.066 -1.493 23.162 hybrid contribution -0.031 2.256 0.184 2.264 sum 1.451 -20.810 -1.308 20.902 Atomic orbital electron populations 1.69667 1.06966 1.29778 1.49114 1.26133 0.96591 1.02606 0.95600 0.84854 0.77907 0.76309 0.78832 1.19409 1.19360 1.19529 1.19723 0.92941 0.83392 1.50733 0.89800 1.41747 1.09565 1.04189 1.63981 1.20134 0.88081 0.85446 0.84126 1.90523 1.15528 1.87726 1.56821 1.22502 0.90152 0.82486 1.05363 1.86659 1.40502 1.15052 1.83593 1.22241 0.87943 0.83759 0.72210 1.90622 1.17313 1.85910 1.47874 1.21863 1.00386 0.88206 1.12034 1.22873 0.96252 0.94409 0.87765 1.21897 0.94536 1.04995 0.96005 1.23505 1.04502 0.94384 0.99157 1.86975 1.21694 1.15750 1.82662 1.23514 0.95157 1.04631 0.98704 1.21135 1.01155 0.92677 0.97700 0.90918 0.76532 0.87498 0.87546 0.82109 0.88719 0.86709 0.89872 0.86363 0.89017 0.84855 0.86903 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 41.93 29.55 68.60 2.03 43.96 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 8 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.68 5.29 -306.98 -1.62 -30.30 16 10 C 0.44 21.40 7.86 87.65 0.69 22.09 16 11 O -0.62 -35.53 16.08 15.74 0.25 -35.28 16 12 C 0.07 2.73 5.95 71.23 0.42 3.15 16 13 O -0.34 -12.76 9.77 -50.71 -0.50 -13.26 16 14 C 0.49 14.86 7.72 70.10 0.54 15.40 16 15 O -0.52 -16.72 13.04 19.71 0.26 -16.46 16 16 C -0.21 -4.51 9.68 23.40 0.23 -4.29 16 17 C -0.01 -0.21 5.06 -17.63 -0.09 -0.30 16 18 C -0.14 -2.61 5.37 30.07 0.16 -2.45 16 19 C -0.07 -1.12 6.50 72.21 0.47 -0.65 16 20 S -0.30 -4.79 22.23 -56.49 -1.26 -6.04 16 21 C -0.07 -0.76 6.48 72.04 0.47 -0.30 16 22 C -0.09 -0.95 5.87 29.89 0.18 -0.77 16 23 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 24 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 25 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 26 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 27 H 0.16 2.94 7.96 -2.91 -0.02 2.92 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.12 2.81 4.41 -39.47 -0.17 2.64 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.81 7.87 -2.39 -0.02 0.79 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.03 314.73 4.02 -65.01 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.23 Total: 26.97 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 4.34 Total: 13.67 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -1.34 Total: -78.56 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: 0.01 Total: -65.00 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -1.26 Total: -6.04 kcal Total: -69.03 4.02 -65.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772132658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.393 kcal (2) G-P(sol) polarization free energy of solvation -69.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds