Wall clock time and date at job start Fri Apr 10 2020 14:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99826 * 2 1 4 4 H 1.48504 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47264 * 300.00082 * 3 2 1 6 6 H 1.48498 * 109.47195 * 60.00219 * 3 2 1 7 7 C 1.37877 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00203 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.63853 * 56.85852 * 9 7 2 11 11 C 1.55158 * 110.87247 * 293.61249 * 9 7 2 12 12 C 1.55130 * 101.48570 * 205.90077 * 11 9 7 13 13 N 1.47424 * 104.72136 * 37.29189 * 12 11 9 14 14 C 1.34777 * 125.64230 * 155.81877 * 13 12 11 15 15 O 1.21282 * 119.99819 * 179.69266 * 14 13 12 16 16 C 1.50697 * 120.00362 * 359.69653 * 14 13 12 17 17 H 1.09002 * 109.47120 * 14.99613 * 16 14 13 18 18 F 1.39900 * 109.47126 * 254.99936 * 16 14 13 19 19 C 1.52997 * 109.47466 * 134.99860 * 16 14 13 20 20 F 1.39905 * 109.47157 * 59.99756 * 19 16 14 21 21 F 1.39900 * 109.47010 * 300.00147 * 19 16 14 22 22 F 1.39897 * 109.47422 * 179.97438 * 19 16 14 23 23 C 1.47023 * 108.70447 * 335.55471 * 13 12 11 24 24 H 0.96998 * 120.00521 * 359.97438 * 1 2 3 25 25 H 0.96703 * 114.00705 * 303.14366 * 10 9 7 26 26 H 1.09005 * 111.00214 * 324.13954 * 11 9 7 27 27 H 1.08998 * 111.00226 * 87.95021 * 11 9 7 28 28 H 1.09004 * 110.48976 * 278.45516 * 12 11 9 29 29 H 1.08997 * 110.34169 * 156.06286 * 12 11 9 30 30 H 1.09001 * 109.87764 * 120.70547 * 23 13 12 31 31 H 1.08996 * 109.88158 * 241.70936 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1199 11 6 0.4722 -2.6879 1.3281 12 6 0.3742 -4.2338 1.4118 13 7 1.6634 -4.7199 0.8874 14 6 2.2281 -5.9104 1.1711 15 8 3.2942 -6.2092 0.6761 16 6 1.5347 -6.8702 2.1033 17 1 0.4970 -6.5636 2.2346 18 9 2.1826 -6.8662 3.3432 19 6 1.5788 -8.2796 1.5095 20 9 2.9107 -8.6732 1.3410 21 9 0.9309 -8.2836 0.2696 22 9 0.9357 -9.1707 2.3752 23 6 2.2281 -3.6937 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 -0.2690 -1.8414 -1.1660 26 1 1.0327 -2.2824 2.1705 27 1 -0.5185 -2.2374 1.2676 28 1 -0.4477 -4.5980 0.7953 29 1 0.2421 -4.5496 2.4466 30 1 3.2020 -3.3762 0.3712 31 1 2.3293 -4.0923 -1.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844018356.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:24 Heat of formation + Delta-G solvation = -277.398291 kcal Electronic energy + Delta-G solvation = -23695.815530 eV Core-core repulsion = 19284.106053 eV Total energy + Delta-G solvation = -4411.709477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.43449 -48.51669 -47.83367 -47.62857 -39.76999 -37.55411 -34.64213 -32.27404 -31.46194 -29.78677 -28.50955 -25.67409 -24.04144 -22.60994 -20.27243 -19.64100 -18.97651 -18.78249 -18.19271 -17.51062 -17.16657 -16.36425 -15.59493 -15.23523 -15.06866 -14.66779 -14.64021 -14.52259 -14.27013 -14.21381 -13.90888 -13.88711 -13.78553 -13.30361 -13.16079 -12.39692 -12.19778 -11.86591 -11.76590 -11.56701 -11.45207 -11.01084 -10.80776 -10.55840 -10.28060 -9.90271 -9.55021 -8.79071 -8.42968 -8.35787 -6.41839 -4.49427 1.93523 2.35191 2.80095 3.12406 3.22206 3.24860 3.26840 3.69501 3.73533 4.04553 4.17710 4.31625 4.69149 4.85492 5.21579 5.51453 5.64317 5.76554 5.91276 6.23436 6.37601 6.63779 6.72876 7.11999 7.16307 7.57597 7.62069 7.82302 7.97964 8.53312 9.19076 9.31368 10.66246 Molecular weight = 285.08amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.004397 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.660389 B = 6366.659883 C = 6449.542748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.136 4.136 12 C 0.081 3.919 13 N -0.588 5.588 14 C 0.501 3.499 15 O -0.511 6.511 16 C 0.040 3.960 17 H 0.144 0.856 18 F -0.156 7.156 19 C 0.448 3.552 20 F -0.156 7.156 21 F -0.166 7.166 22 F -0.172 7.172 23 C 0.121 3.879 24 H 0.270 0.730 25 H 0.388 0.612 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -10.486 5.054 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.175 4.175 12 C -0.040 4.040 13 N -0.320 5.320 14 C 0.283 3.717 15 O -0.387 6.387 16 C -0.001 4.001 17 H 0.161 0.839 18 F -0.136 7.136 19 C 0.393 3.607 20 F -0.137 7.137 21 F -0.147 7.147 22 F -0.153 7.153 23 C 0.000 4.000 24 H 0.080 0.920 25 H 0.241 0.759 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.679 -11.148 4.687 12.209 hybrid contribution -0.030 1.175 0.310 1.215 sum -1.709 -9.973 4.998 11.285 Atomic orbital electron populations 1.69562 1.06012 1.27868 1.50302 1.24988 0.95052 0.99680 0.93236 0.86315 0.80175 0.82455 0.77806 1.19515 1.20659 1.20750 1.21551 0.93844 0.89998 1.52054 0.91474 1.19439 0.86153 0.90657 0.82953 1.86095 1.51430 1.53440 1.48694 1.23392 1.03303 0.89379 1.01379 1.22817 0.84733 0.98903 0.97597 1.48641 1.22409 1.15164 1.45811 1.19493 0.86339 0.82438 0.83402 1.90811 1.20821 1.75130 1.51941 1.22805 1.01864 0.92560 0.82901 0.83881 1.92994 1.83429 1.96826 1.40342 1.20323 0.75245 0.88169 0.77006 1.93301 1.33278 1.91885 1.95205 1.93255 1.81469 1.96727 1.43257 1.93234 1.81778 1.70723 1.69552 1.22283 0.97853 0.87041 0.92817 0.91988 0.75942 0.90988 0.89121 0.90734 0.91693 0.90249 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.82 10.70 55.43 0.59 -21.23 16 2 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 3 Si 0.91 19.40 29.54 -169.99 -5.02 14.38 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.54 -13.23 8.22 -34.44 -0.28 -13.51 16 8 H 0.07 1.67 7.53 -52.49 -0.40 1.27 16 9 C 0.25 5.57 0.85 -89.94 -0.08 5.50 16 10 O -0.59 -13.82 13.08 -35.23 -0.46 -14.28 16 11 C -0.14 -2.65 5.69 -24.46 -0.14 -2.79 16 12 C 0.08 1.29 6.26 -2.41 -0.02 1.27 16 13 N -0.59 -10.64 3.32 -170.39 -0.57 -11.21 16 14 C 0.50 8.80 6.93 -10.99 -0.08 8.72 16 15 O -0.51 -10.58 15.93 5.56 0.09 -10.49 16 16 C 0.04 0.54 3.44 -27.89 -0.10 0.44 16 17 H 0.14 1.42 6.48 -51.93 -0.34 1.08 16 18 F -0.16 -2.19 17.03 2.25 0.04 -2.15 16 19 C 0.45 6.09 2.86 37.16 0.11 6.19 16 20 F -0.16 -2.44 15.95 2.25 0.04 -2.40 16 21 F -0.17 -2.30 17.02 2.25 0.04 -2.27 16 22 F -0.17 -2.08 17.30 2.25 0.04 -2.04 16 23 C 0.12 2.52 6.21 -3.07 -0.02 2.50 16 24 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 25 H 0.39 9.27 6.98 45.56 0.32 9.59 16 26 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 27 H 0.09 1.83 7.78 -51.93 -0.40 1.43 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.81 7.24 -51.93 -0.38 0.44 16 30 H 0.08 1.68 7.63 -51.93 -0.40 1.29 16 31 H 0.07 1.51 8.07 -51.93 -0.42 1.09 16 LS Contribution 283.16 15.07 4.27 4.27 Total: -1.00 -26.62 283.16 -3.62 -30.24 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -1.98 Total: 7.16 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.69 Total: 10.02 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.03 Total: -32.44 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.37 Total: -24.77 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 0.15 Total: -8.85 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.62 -3.62 -30.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018356.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.154 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds