Wall clock time and date at job start Fri Apr 10 2020 14:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99826 * 2 1 4 4 H 1.48504 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47264 * 300.00082 * 3 2 1 6 6 H 1.48498 * 109.47195 * 60.00219 * 3 2 1 7 7 C 1.37877 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00203 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.63853 * 56.85852 * 9 7 2 11 11 C 1.55158 * 110.87247 * 293.61249 * 9 7 2 12 12 C 1.55130 * 101.48570 * 205.90077 * 11 9 7 13 13 N 1.47424 * 104.72136 * 37.29189 * 12 11 9 14 14 C 1.34777 * 125.64230 * 155.81877 * 13 12 11 15 15 O 1.21282 * 119.99819 * 179.69266 * 14 13 12 16 16 C 1.50697 * 120.00362 * 359.69653 * 14 13 12 17 17 H 1.09002 * 109.47120 * 14.99613 * 16 14 13 18 18 F 1.39900 * 109.47126 * 254.99936 * 16 14 13 19 19 C 1.52997 * 109.47466 * 134.99860 * 16 14 13 20 20 F 1.39905 * 109.47157 * 59.99756 * 19 16 14 21 21 F 1.39900 * 109.47010 * 300.00147 * 19 16 14 22 22 F 1.39897 * 109.47422 * 179.97438 * 19 16 14 23 23 C 1.47023 * 108.70447 * 335.55471 * 13 12 11 24 24 H 0.96998 * 120.00521 * 359.97438 * 1 2 3 25 25 H 0.96703 * 114.00705 * 303.14366 * 10 9 7 26 26 H 1.09005 * 111.00214 * 324.13954 * 11 9 7 27 27 H 1.08998 * 111.00226 * 87.95021 * 11 9 7 28 28 H 1.09004 * 110.48976 * 278.45516 * 12 11 9 29 29 H 1.08997 * 110.34169 * 156.06286 * 12 11 9 30 30 H 1.09001 * 109.87764 * 120.70547 * 23 13 12 31 31 H 1.08996 * 109.88158 * 241.70936 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1199 11 6 0.4722 -2.6879 1.3281 12 6 0.3742 -4.2338 1.4118 13 7 1.6634 -4.7199 0.8874 14 6 2.2281 -5.9104 1.1711 15 8 3.2942 -6.2092 0.6761 16 6 1.5347 -6.8702 2.1033 17 1 0.4970 -6.5636 2.2346 18 9 2.1826 -6.8662 3.3432 19 6 1.5788 -8.2796 1.5095 20 9 2.9107 -8.6732 1.3410 21 9 0.9309 -8.2836 0.2696 22 9 0.9357 -9.1707 2.3752 23 6 2.2281 -3.6937 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 -0.2690 -1.8414 -1.1660 26 1 1.0327 -2.2824 2.1705 27 1 -0.5185 -2.2374 1.2676 28 1 -0.4477 -4.5980 0.7953 29 1 0.2421 -4.5496 2.4466 30 1 3.2020 -3.3762 0.3712 31 1 2.3293 -4.0923 -1.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844018356.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:24 Heat of formation + Delta-G solvation = -295.457603 kcal Electronic energy + Delta-G solvation = -23696.598640 eV Core-core repulsion = 19284.106053 eV Total energy + Delta-G solvation = -4412.492588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.50470 -49.60781 -48.87379 -48.74218 -41.23948 -39.14998 -36.30592 -34.14851 -32.75435 -31.25990 -30.07011 -27.33065 -25.38134 -24.00379 -21.77877 -21.09074 -20.12396 -19.89281 -19.37577 -19.19300 -18.53491 -17.57234 -17.04629 -16.88962 -16.61764 -16.03482 -15.76654 -15.70013 -15.62734 -15.27310 -15.19936 -14.99525 -14.96785 -14.84766 -14.59139 -13.91400 -13.83915 -13.41552 -13.25812 -13.22201 -12.79220 -12.64661 -12.46498 -12.27644 -12.02899 -11.38223 -11.23437 -10.64383 -10.15629 -9.89003 -8.27143 -6.40405 0.73148 1.05773 1.40931 1.46384 1.52019 1.56613 2.18199 2.38581 2.58238 2.62239 2.90573 2.99214 3.26227 3.62397 3.76940 3.88799 4.18112 4.33524 4.52100 4.57648 4.78393 5.04663 5.12330 5.42928 5.52230 5.75901 6.02359 6.17950 6.55529 6.63148 7.30789 7.44313 8.79477 Molecular weight = 285.08amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.004397 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.660389 B = 6366.659883 C = 6449.542748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.040 3.960 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.562 4.562 8 H 0.053 0.947 9 C 0.235 3.765 10 O -0.593 6.593 11 C -0.129 4.129 12 C 0.086 3.914 13 N -0.590 5.590 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.052 3.948 17 H 0.190 0.810 18 F -0.156 7.156 19 C 0.450 3.550 20 F -0.171 7.171 21 F -0.168 7.168 22 F -0.159 7.159 23 C 0.127 3.873 24 H 0.273 0.727 25 H 0.384 0.616 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -10.991 6.273 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.161 4.161 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.071 0.929 9 C 0.195 3.805 10 O -0.403 6.403 11 C -0.168 4.168 12 C -0.034 4.034 13 N -0.321 5.321 14 C 0.281 3.719 15 O -0.428 6.428 16 C 0.011 3.989 17 H 0.207 0.793 18 F -0.136 7.136 19 C 0.395 3.605 20 F -0.153 7.153 21 F -0.149 7.149 22 F -0.140 7.140 23 C 0.005 3.995 24 H 0.083 0.917 25 H 0.236 0.764 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.849 -11.666 5.926 13.391 hybrid contribution 0.345 1.334 -0.099 1.381 sum -2.504 -10.332 5.827 12.123 Atomic orbital electron populations 1.69605 1.06463 1.28517 1.50009 1.25528 0.95832 1.01806 0.92978 0.85518 0.78766 0.79542 0.77838 1.20146 1.20541 1.20100 1.21767 0.93536 0.91693 1.53021 0.92876 1.19585 0.86585 0.90313 0.84050 1.86080 1.51466 1.53143 1.49647 1.23169 1.02053 0.92422 0.99110 1.22943 0.83920 0.95952 1.00615 1.48645 1.23088 1.15014 1.45375 1.20164 0.85947 0.82456 0.83335 1.90796 1.22666 1.75907 1.53425 1.22814 1.03341 0.91144 0.81565 0.79302 1.93005 1.83758 1.96727 1.40100 1.20315 0.74686 0.88442 0.77085 1.93275 1.34605 1.92076 1.95314 1.93257 1.81378 1.96753 1.43500 1.93264 1.81390 1.70269 1.69065 1.21971 0.97283 0.87549 0.92736 0.91691 0.76390 0.91794 0.89836 0.89004 0.87110 0.91472 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.65 10.70 21.45 0.23 -43.42 16 2 C 0.04 1.94 5.28 84.65 0.45 2.39 16 3 Si 0.96 39.65 29.54 68.60 2.03 41.67 16 4 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.56 -28.08 8.22 25.60 0.21 -27.87 16 8 H 0.05 2.72 7.53 -2.91 -0.02 2.70 16 9 C 0.23 10.54 0.85 -10.35 -0.01 10.53 16 10 O -0.59 -28.01 13.08 -148.98 -1.95 -29.96 16 11 C -0.13 -4.85 5.69 32.06 0.18 -4.67 16 12 C 0.09 2.45 6.26 86.93 0.54 3.00 16 13 N -0.59 -20.33 3.32 -811.37 -2.70 -23.03 16 14 C 0.50 16.57 6.93 87.66 0.61 17.18 16 15 O -0.55 -22.58 15.93 -3.04 -0.05 -22.63 16 16 C 0.05 1.23 3.44 29.85 0.10 1.33 16 17 H 0.19 2.73 6.48 -2.39 -0.02 2.71 16 18 F -0.16 -3.88 17.03 44.97 0.77 -3.11 16 19 C 0.45 11.11 2.86 71.98 0.21 11.32 16 20 F -0.17 -5.16 15.95 44.97 0.72 -4.44 16 21 F -0.17 -4.28 17.02 44.97 0.77 -3.52 16 22 F -0.16 -3.35 17.30 44.97 0.78 -2.58 16 23 C 0.13 5.34 6.21 86.73 0.54 5.88 16 24 H 0.27 12.53 8.31 -92.71 -0.77 11.76 16 25 H 0.38 18.43 6.98 -74.05 -0.52 17.91 16 26 H 0.06 2.48 8.05 -2.38 -0.02 2.46 16 27 H 0.08 3.26 7.78 -2.39 -0.02 3.24 16 28 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.11 2.19 7.24 -2.39 -0.02 2.17 16 30 H 0.07 2.94 7.63 -2.39 -0.02 2.92 16 31 H 0.05 2.40 8.07 -2.39 -0.02 2.38 16 Total: -1.00 -57.51 283.16 4.10 -53.41 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.68 Total: 18.52 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 2.83 Total: 19.08 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -2.47 Total: -66.45 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -2.00 Total: -52.60 kcal Atomic # 9 Polarization: -16.67 SS G_CDS: 3.03 Total: -13.64 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Total: -57.51 4.10 -53.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018356.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.044 kcal (2) G-P(sol) polarization free energy of solvation -57.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -299.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -295.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds