Wall clock time and date at job start Fri Apr 10 2020 14:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46969 * 291.21941 * 3 2 1 5 5 C 1.37098 * 120.00090 * 96.16812 * 4 3 2 6 6 H 1.08000 * 119.99691 * 218.60735 * 5 4 3 7 7 C 1.38952 * 120.00277 * 38.60537 * 5 4 3 8 8 N 1.31409 * 119.99810 * 211.45478 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 31.44912 * 7 5 4 10 10 H 1.48500 * 109.47216 * 95.30415 * 9 7 5 11 11 H 1.48493 * 109.46953 * 215.30687 * 9 7 5 12 12 H 1.48504 * 109.47152 * 335.30299 * 9 7 5 13 13 C 1.34780 * 120.00247 * 276.16144 * 4 3 2 14 14 O 1.21296 * 119.99654 * 4.69688 * 13 4 3 15 15 C 1.50702 * 120.00320 * 184.69721 * 13 4 3 16 16 H 1.08993 * 109.38086 * 326.46419 * 15 13 4 17 17 C 1.52585 * 109.38605 * 86.25757 * 15 13 4 18 18 C 1.52627 * 110.62001 * 190.25105 * 17 15 13 19 19 C 1.53045 * 109.89648 * 289.86032 * 18 17 15 20 20 S 1.81670 * 108.99912 * 63.68624 * 19 18 17 21 21 O 1.42097 * 108.66180 * 191.37449 * 20 19 18 22 22 O 1.42105 * 108.66019 * 60.03435 * 20 19 18 23 23 C 1.53042 * 109.38186 * 206.67922 * 15 13 4 24 24 H 4.40631 * 5.51445 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47377 * 51.21957 * 3 2 1 26 26 H 1.09000 * 109.47055 * 171.22119 * 3 2 1 27 27 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.24068 * 310.44807 * 17 15 13 29 29 H 1.08999 * 109.24044 * 69.84469 * 17 15 13 30 30 H 1.08998 * 109.40157 * 169.75267 * 18 17 15 31 31 H 1.08997 * 109.37884 * 49.95763 * 18 17 15 32 32 H 1.09001 * 109.54507 * 303.83241 * 19 18 17 33 33 H 1.08997 * 109.62708 * 183.59464 * 19 18 17 34 34 H 1.09004 * 109.55062 * 296.04678 * 23 15 13 35 35 H 1.08993 * 109.55070 * 56.23975 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4990 1.2876 5 6 3.4838 -1.8178 1.4232 6 1 3.2483 -2.3478 2.3342 7 6 4.1408 -2.4725 0.3885 8 7 3.9490 -3.7584 0.1980 9 14 5.2967 -1.5245 -0.7316 10 1 6.6905 -1.6668 -0.2394 11 1 5.2016 -2.0641 -2.1118 12 1 4.9168 -0.0889 -0.7342 13 6 3.2406 0.3377 2.3388 14 8 2.8522 1.4829 2.2440 15 6 3.8418 -0.1495 3.6320 16 1 3.5908 -1.2005 3.7743 17 6 5.3587 0.0059 3.5756 18 6 6.0161 -0.7053 4.7552 19 6 5.7115 0.0472 6.0526 20 16 3.9211 0.0010 6.3566 21 8 3.6138 0.9126 7.4025 22 8 3.5144 -1.3556 6.4726 23 6 3.2771 0.6696 4.7950 24 1 -1.0499 0.0001 0.0002 25 1 3.0096 -0.6428 -0.8011 26 1 3.0088 1.0164 -0.1568 27 1 4.4079 -4.2156 -0.5240 28 1 5.7296 -0.4253 2.6457 29 1 5.6126 1.0655 3.6058 30 1 7.0947 -0.7398 4.6017 31 1 5.6282 -1.7214 4.8267 32 1 6.0391 1.0826 5.9591 33 1 6.2349 -0.4274 6.8826 34 1 3.5828 1.7106 4.6903 35 1 2.1890 0.6068 4.7908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846067188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:00 Heat of formation + Delta-G solvation = -42.325573 kcal Electronic energy + Delta-G solvation = -21265.412819 eV Core-core repulsion = 17971.966776 eV Total energy + Delta-G solvation = -3293.446043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.46851 -37.03809 -36.25601 -35.87611 -35.21298 -32.78466 -31.88822 -31.49605 -27.71004 -26.95744 -25.17341 -23.49889 -21.25196 -19.18172 -18.73539 -18.35274 -17.33012 -16.47701 -16.20039 -15.71797 -15.52120 -15.39451 -14.67956 -14.57333 -14.15466 -13.85316 -13.33481 -12.99632 -12.92369 -12.85619 -12.40507 -12.20056 -11.97738 -11.87363 -11.58337 -11.27986 -11.25336 -11.08745 -11.00451 -10.54495 -10.50630 -10.27123 -10.12485 -9.84734 -9.46750 -9.35323 -8.69887 -8.04869 -6.70993 -4.23872 0.16195 2.76908 2.93383 3.09325 3.12721 3.23109 3.48271 3.51309 3.75893 3.98092 4.03769 4.42362 4.60635 4.67693 4.75124 4.91330 4.94389 5.11982 5.17945 5.41642 5.52116 5.63533 5.80988 5.95102 5.98339 6.07883 6.12005 6.24776 6.39799 6.43257 6.52456 7.11668 7.86921 8.08547 8.25229 8.77295 9.13333 9.47909 10.38916 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.006636 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.850012 B = 4218.443854 C = 4911.184516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.165 4.165 3 C 0.215 3.785 4 N -0.451 5.451 5 C -0.365 4.365 6 H 0.107 0.893 7 C 0.079 3.921 8 N -0.832 5.832 9 Si 0.848 3.152 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.255 1.255 13 C 0.490 3.510 14 O -0.589 6.589 15 C -0.080 4.080 16 H 0.119 0.881 17 C -0.125 4.125 18 C -0.106 4.106 19 C -0.603 4.603 20 S 2.412 3.588 21 O -0.952 6.952 22 O -0.936 6.936 23 C -0.579 4.579 24 H 0.211 0.789 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.278 0.722 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 5.379 5.022 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.166 4.166 3 C 0.092 3.908 4 N -0.170 5.170 5 C -0.491 4.491 6 H 0.124 0.876 7 C -0.131 4.131 8 N -0.464 5.464 9 Si 0.672 3.328 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.179 1.179 13 C 0.279 3.721 14 O -0.473 6.473 15 C -0.101 4.101 16 H 0.137 0.863 17 C -0.163 4.163 18 C -0.145 4.145 19 C -0.732 4.732 20 S 2.595 3.405 21 O -0.949 6.949 22 O -0.933 6.933 23 C -0.709 4.709 24 H 0.228 0.772 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.950 5.433 5.632 8.766 hybrid contribution 0.794 0.447 -1.368 1.644 sum 4.745 5.880 4.264 8.676 Atomic orbital electron populations 1.24656 0.95666 1.03215 1.01255 1.23810 0.95010 0.98295 0.99481 1.18729 0.83467 1.00075 0.88511 1.43622 1.55689 1.09555 1.08173 1.19003 1.40186 0.83674 1.06270 0.87577 1.25330 0.96212 0.95090 0.96504 1.69931 1.36525 1.10410 1.29521 0.87368 0.82875 0.82027 0.80493 1.19734 1.20396 1.17856 1.20065 0.81405 0.84802 0.85845 1.90562 1.53387 1.19175 1.84171 1.20790 0.95791 1.01554 0.92009 0.86340 1.21551 0.92708 1.01598 1.00398 1.21290 1.03319 0.99774 0.90073 1.30231 1.25456 1.10017 1.07505 1.08118 0.79011 0.75823 0.77507 1.93565 1.83030 1.65920 1.52428 1.93596 1.80227 1.33535 1.85913 1.30129 1.12420 1.11812 1.16528 0.77211 0.89162 0.89423 0.91201 0.88455 0.90873 0.89490 0.89118 0.85093 0.85159 0.84401 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.33 19.25 29.55 0.57 -3.76 16 2 C -0.16 -3.53 13.58 -37.12 -0.50 -4.03 16 3 C 0.21 4.65 3.93 -6.83 -0.03 4.62 16 4 N -0.45 -10.19 2.10 -117.93 -0.25 -10.44 16 5 C -0.37 -8.74 8.86 -14.93 -0.13 -8.87 16 6 H 0.11 2.67 6.72 -52.49 -0.35 2.32 16 7 C 0.08 1.91 5.04 -17.47 -0.09 1.82 16 8 N -0.83 -21.31 13.96 55.50 0.77 -20.53 16 9 Si 0.85 17.76 26.30 -169.99 -4.47 13.29 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.25 -5.14 5.81 56.52 0.33 -4.82 16 13 C 0.49 10.48 6.61 -10.98 -0.07 10.41 16 14 O -0.59 -13.66 15.91 5.54 0.09 -13.57 16 15 C -0.08 -1.37 1.74 -91.96 -0.16 -1.53 16 16 H 0.12 2.12 6.18 -51.93 -0.32 1.80 16 17 C -0.12 -1.78 4.91 -27.13 -0.13 -1.91 16 18 C -0.11 -1.22 5.74 -26.90 -0.15 -1.38 16 19 C -0.60 -6.01 6.34 37.18 0.24 -5.78 16 20 S 2.41 32.24 5.31 -107.50 -0.57 31.67 16 21 O -0.95 -15.12 18.10 -57.81 -1.05 -16.17 16 22 O -0.94 -15.72 17.93 -57.81 -1.04 -16.76 16 23 C -0.58 -8.48 5.10 37.18 0.19 -8.29 16 24 H 0.21 2.99 7.80 -54.09 -0.42 2.57 16 25 H 0.09 1.92 4.68 -51.93 -0.24 1.68 16 26 H 0.09 1.82 7.65 -51.93 -0.40 1.42 16 27 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.10 1.52 8.09 -51.93 -0.42 1.10 16 29 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.10 8.00 -51.93 -0.42 0.69 16 32 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.14 1.83 7.99 -51.93 -0.41 1.41 16 35 H 0.13 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -32.63 306.82 -6.47 -39.10 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.31 Total: 7.48 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.28 Total: -18.70 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.53 Total: -30.97 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.99 Total: -46.50 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.47 Total: 13.29 kcal Atomic # 16 Polarization: 32.24 SS G_CDS: -0.57 Total: 31.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.63 -6.47 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846067188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.222 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds