Wall clock time and date at job start Fri Apr 10 2020 14:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46969 * 291.21941 * 3 2 1 5 5 C 1.37098 * 120.00090 * 96.16812 * 4 3 2 6 6 H 1.08000 * 119.99691 * 218.60735 * 5 4 3 7 7 C 1.38952 * 120.00277 * 38.60537 * 5 4 3 8 8 N 1.31409 * 119.99810 * 211.45478 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 31.44912 * 7 5 4 10 10 H 1.48500 * 109.47216 * 95.30415 * 9 7 5 11 11 H 1.48493 * 109.46953 * 215.30687 * 9 7 5 12 12 H 1.48504 * 109.47152 * 335.30299 * 9 7 5 13 13 C 1.34780 * 120.00247 * 276.16144 * 4 3 2 14 14 O 1.21296 * 119.99654 * 4.69688 * 13 4 3 15 15 C 1.50702 * 120.00320 * 184.69721 * 13 4 3 16 16 H 1.08993 * 109.38086 * 326.46419 * 15 13 4 17 17 C 1.52585 * 109.38605 * 86.25757 * 15 13 4 18 18 C 1.52627 * 110.62001 * 190.25105 * 17 15 13 19 19 C 1.53045 * 109.89648 * 289.86032 * 18 17 15 20 20 S 1.81670 * 108.99912 * 63.68624 * 19 18 17 21 21 O 1.42097 * 108.66180 * 191.37449 * 20 19 18 22 22 O 1.42105 * 108.66019 * 60.03435 * 20 19 18 23 23 C 1.53042 * 109.38186 * 206.67922 * 15 13 4 24 24 H 4.40631 * 5.51445 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47377 * 51.21957 * 3 2 1 26 26 H 1.09000 * 109.47055 * 171.22119 * 3 2 1 27 27 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.24068 * 310.44807 * 17 15 13 29 29 H 1.08999 * 109.24044 * 69.84469 * 17 15 13 30 30 H 1.08998 * 109.40157 * 169.75267 * 18 17 15 31 31 H 1.08997 * 109.37884 * 49.95763 * 18 17 15 32 32 H 1.09001 * 109.54507 * 303.83241 * 19 18 17 33 33 H 1.08997 * 109.62708 * 183.59464 * 19 18 17 34 34 H 1.09004 * 109.55062 * 296.04678 * 23 15 13 35 35 H 1.08993 * 109.55070 * 56.23975 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4990 1.2876 5 6 3.4838 -1.8178 1.4232 6 1 3.2483 -2.3478 2.3342 7 6 4.1408 -2.4725 0.3885 8 7 3.9490 -3.7584 0.1980 9 14 5.2967 -1.5245 -0.7316 10 1 6.6905 -1.6668 -0.2394 11 1 5.2016 -2.0641 -2.1118 12 1 4.9168 -0.0889 -0.7342 13 6 3.2406 0.3377 2.3388 14 8 2.8522 1.4829 2.2440 15 6 3.8418 -0.1495 3.6320 16 1 3.5908 -1.2005 3.7743 17 6 5.3587 0.0059 3.5756 18 6 6.0161 -0.7053 4.7552 19 6 5.7115 0.0472 6.0526 20 16 3.9211 0.0010 6.3566 21 8 3.6138 0.9126 7.4025 22 8 3.5144 -1.3556 6.4726 23 6 3.2771 0.6696 4.7950 24 1 -1.0499 0.0001 0.0002 25 1 3.0096 -0.6428 -0.8011 26 1 3.0088 1.0164 -0.1568 27 1 4.4079 -4.2156 -0.5240 28 1 5.7296 -0.4253 2.6457 29 1 5.6126 1.0655 3.6058 30 1 7.0947 -0.7398 4.6017 31 1 5.6282 -1.7214 4.8267 32 1 6.0391 1.0826 5.9591 33 1 6.2349 -0.4274 6.8826 34 1 3.5828 1.7106 4.6903 35 1 2.1890 0.6068 4.7908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846067188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:58 Heat of formation + Delta-G solvation = -66.019671 kcal Electronic energy + Delta-G solvation = -21266.440272 eV Core-core repulsion = 17971.966776 eV Total energy + Delta-G solvation = -3294.473496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.08546 -38.24918 -37.54733 -37.07013 -36.85566 -34.49008 -33.52799 -32.73904 -29.03716 -28.31801 -26.93946 -24.78095 -22.40268 -20.88426 -20.03518 -19.73142 -18.78500 -18.01392 -17.41916 -17.26480 -16.88207 -16.61353 -16.17876 -15.79545 -15.74304 -15.19527 -14.70634 -14.68199 -14.16729 -14.08014 -13.83321 -13.77985 -13.22445 -13.07844 -13.01568 -12.79280 -12.64222 -12.33438 -12.28061 -11.95867 -11.76216 -11.69228 -11.50581 -11.22051 -11.07730 -11.06898 -10.36451 -9.87140 -8.57449 -6.13322 -0.90437 1.25724 1.37927 1.46065 1.58094 1.76651 1.83148 1.91620 2.22307 2.66812 2.76329 2.89126 3.07593 3.56363 3.58595 3.72672 3.85026 3.86478 4.09787 4.19388 4.36044 4.44986 4.49349 4.64059 4.72398 4.78365 4.94488 5.04988 5.09179 5.27551 5.31504 5.36363 6.05231 6.19298 6.68790 6.93698 7.34445 7.71537 8.56236 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.006636 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.850012 B = 4218.443854 C = 4911.184516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.228 4.228 3 C 0.210 3.790 4 N -0.461 5.461 5 C -0.363 4.363 6 H 0.080 0.920 7 C 0.045 3.955 8 N -0.875 5.875 9 Si 0.904 3.096 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.247 1.247 13 C 0.485 3.515 14 O -0.609 6.609 15 C -0.081 4.081 16 H 0.101 0.899 17 C -0.126 4.126 18 C -0.107 4.107 19 C -0.573 4.573 20 S 2.424 3.576 21 O -0.977 6.977 22 O -0.977 6.977 23 C -0.585 4.585 24 H 0.254 0.746 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.282 0.718 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 6.730 5.404 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.230 4.230 3 C 0.088 3.912 4 N -0.181 5.181 5 C -0.489 4.489 6 H 0.098 0.902 7 C -0.163 4.163 8 N -0.508 5.508 9 Si 0.726 3.274 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.170 1.170 13 C 0.275 3.725 14 O -0.495 6.495 15 C -0.103 4.103 16 H 0.119 0.881 17 C -0.164 4.164 18 C -0.145 4.145 19 C -0.706 4.706 20 S 2.610 3.390 21 O -0.975 6.975 22 O -0.975 6.975 23 C -0.713 4.713 24 H 0.270 0.730 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.172 0.828 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.581 6.792 6.015 10.652 hybrid contribution 0.181 0.045 -1.477 1.488 sum 5.762 6.838 4.538 10.027 Atomic orbital electron populations 1.25693 0.96648 1.00490 0.98509 1.24140 0.95880 1.00876 1.02068 1.18730 0.84326 1.00062 0.88116 1.43728 1.56203 1.09166 1.08966 1.18783 1.40441 0.84177 1.05526 0.90209 1.25863 0.96949 0.95620 0.97841 1.69989 1.37888 1.12021 1.30947 0.86477 0.81149 0.81118 0.78611 1.18591 1.20337 1.17006 1.20789 0.80539 0.84454 0.86733 1.90530 1.54164 1.20027 1.84769 1.20827 0.98133 1.00766 0.90599 0.88104 1.21631 0.90181 1.03444 1.01163 1.21324 1.04887 0.98909 0.89381 1.30031 1.20106 1.12656 1.07827 1.07664 0.80977 0.74177 0.76142 1.93528 1.84686 1.66227 1.53023 1.93542 1.82317 1.35438 1.86158 1.30189 1.11965 1.12513 1.16680 0.72982 0.89387 0.89100 0.90787 0.90095 0.88496 0.86115 0.90313 0.81478 0.81861 0.82841 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.09 19.25 74.32 1.43 -5.66 16 2 C -0.23 -9.80 13.58 31.13 0.42 -9.37 16 3 C 0.21 9.19 3.93 84.57 0.33 9.52 16 4 N -0.46 -21.21 2.10 -645.41 -1.36 -22.57 16 5 C -0.36 -17.91 8.86 84.04 0.74 -17.16 16 6 H 0.08 4.27 6.72 -2.91 -0.02 4.25 16 7 C 0.04 2.20 5.04 84.93 0.43 2.63 16 8 N -0.87 -45.83 13.96 21.66 0.30 -45.53 16 9 Si 0.90 36.58 26.30 68.60 1.80 38.38 16 10 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.25 -9.56 5.81 99.48 0.58 -8.98 16 13 C 0.49 20.97 6.61 87.66 0.58 21.55 16 14 O -0.61 -28.37 15.91 -3.08 -0.05 -28.42 16 15 C -0.08 -2.81 1.74 -11.66 -0.02 -2.83 16 16 H 0.10 3.81 6.18 -2.39 -0.01 3.79 16 17 C -0.13 -3.36 4.91 30.33 0.15 -3.21 16 18 C -0.11 -2.10 5.74 30.49 0.17 -1.93 16 19 C -0.57 -8.96 6.34 72.00 0.46 -8.50 16 20 S 2.42 62.00 5.31 -56.49 -0.30 61.70 16 21 O -0.98 -29.79 18.10 -127.40 -2.31 -32.09 16 22 O -0.98 -33.13 17.93 -127.40 -2.28 -35.41 16 23 C -0.58 -17.01 5.10 72.00 0.37 -16.64 16 24 H 0.25 6.38 7.80 -4.42 -0.03 6.35 16 25 H 0.09 3.78 4.68 -2.39 -0.01 3.77 16 26 H 0.09 3.80 7.65 -2.39 -0.02 3.79 16 27 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.08 2.43 8.09 -2.39 -0.02 2.41 16 29 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 32 H 0.17 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.15 3.88 7.99 -2.39 -0.02 3.86 16 35 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 Total: -1.00 -72.56 306.82 1.84 -70.71 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.97 Total: 24.85 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 5.06 Total: -31.62 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -1.05 Total: -68.10 kcal Atomic # 8 Polarization: -91.28 SS G_CDS: -4.64 Total: -95.92 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 1.80 Total: 38.38 kcal Atomic # 16 Polarization: 62.00 SS G_CDS: -0.30 Total: 61.70 kcal Total: -72.56 1.84 -70.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846067188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.695 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds