Wall clock time and date at job start Fri Apr 10 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47201 * 186.51969 * 3 2 1 5 5 C 1.37098 * 119.99720 * 265.75354 * 4 3 2 6 6 H 1.07998 * 120.00330 * 46.26579 * 5 4 3 7 7 C 1.38946 * 119.99943 * 226.25737 * 5 4 3 8 8 N 1.31418 * 119.99594 * 29.10602 * 7 5 4 9 9 Si 1.86798 * 120.00596 * 209.09691 * 7 5 4 10 10 H 1.48507 * 109.46860 * 60.00191 * 9 7 5 11 11 H 1.48495 * 109.47399 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47203 * 300.00852 * 9 7 5 13 13 C 1.34774 * 120.00059 * 85.75308 * 4 3 2 14 14 O 1.21296 * 119.99871 * 186.58850 * 13 4 3 15 15 C 1.50702 * 120.00045 * 6.58222 * 13 4 3 16 16 H 1.08996 * 109.38130 * 7.55138 * 15 13 4 17 17 C 1.52584 * 109.38621 * 247.76165 * 15 13 4 18 18 C 1.52591 * 110.64375 * 169.85982 * 17 15 13 19 19 C 1.53036 * 109.98759 * 69.97845 * 18 17 15 20 20 S 1.81669 * 109.00070 * 296.35630 * 19 18 17 21 21 O 1.42104 * 108.66282 * 168.62794 * 20 19 18 22 22 O 1.42099 * 108.66112 * 299.87264 * 20 19 18 23 23 C 1.53107 * 109.36602 * 127.09406 * 15 13 4 24 24 H 4.40645 * 5.51419 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46572 * 66.51729 * 3 2 1 26 26 H 1.08996 * 109.46719 * 306.52269 * 3 2 1 27 27 H 0.97000 * 119.99450 * 184.93547 * 8 7 5 28 28 H 1.09000 * 109.24439 * 49.55386 * 17 15 13 29 29 H 1.09009 * 109.20971 * 290.13333 * 17 15 13 30 30 H 1.08997 * 109.37859 * 309.82317 * 18 17 15 31 31 H 1.09000 * 109.29782 * 190.09244 * 18 17 15 32 32 H 1.08997 * 109.54582 * 176.49744 * 19 18 17 33 33 H 1.09003 * 109.54428 * 56.21248 * 19 18 17 34 34 H 1.08998 * 109.44720 * 63.91102 * 23 15 13 35 35 H 1.08998 * 109.67508 * 303.60428 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3731 0.1568 5 6 3.4448 2.1206 -0.9495 6 1 2.7680 2.1478 -1.7907 7 6 4.6308 2.8435 -0.9886 8 7 5.6797 2.4216 -0.3186 9 14 4.7345 4.4147 -1.9935 10 1 3.7356 5.3913 -1.4897 11 1 6.0972 4.9918 -1.8708 12 1 4.4530 4.1099 -3.4194 13 6 3.2767 1.9009 1.3887 14 8 3.5649 3.0721 1.5170 15 6 3.0782 1.0359 2.6067 16 1 2.9595 -0.0025 2.2975 17 6 1.8257 1.4891 3.3511 18 6 1.4553 0.4870 4.4406 19 6 2.4840 0.5407 5.5723 20 16 4.1015 0.0240 4.9265 21 8 5.0956 0.3249 5.8963 22 8 3.9909 -1.3039 4.4329 23 6 4.3033 1.1530 3.5176 24 1 -1.0502 -0.0004 -0.0002 25 1 3.0095 -0.4087 -0.9426 26 1 3.0096 -0.6108 0.8258 27 1 6.4846 2.9620 -0.2874 28 1 0.9994 1.5743 2.6453 29 1 2.0112 2.4621 3.8061 30 1 1.4356 -0.5171 4.0169 31 1 0.4695 0.7323 4.8356 32 1 2.1795 -0.1320 6.3741 33 1 2.5524 1.5591 5.9549 34 1 4.3893 2.1772 3.8803 35 1 5.2013 0.8849 2.9611 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846067189.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:04 Heat of formation + Delta-G solvation = -42.003022 kcal Electronic energy + Delta-G solvation = -21398.638657 eV Core-core repulsion = 18105.206601 eV Total energy + Delta-G solvation = -3293.432056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.20394 -37.00242 -36.15659 -35.89388 -34.84240 -32.78630 -31.75325 -31.15847 -27.61810 -26.61616 -25.29866 -23.34415 -21.38443 -19.28122 -18.74198 -17.90496 -17.32901 -16.36910 -16.13811 -15.65257 -15.46992 -15.15807 -14.66916 -14.50204 -14.00035 -13.74945 -13.34267 -12.90602 -12.76961 -12.58389 -12.48570 -12.02642 -11.90026 -11.55974 -11.52476 -11.36044 -11.26399 -10.93630 -10.83022 -10.62193 -10.51750 -10.35119 -10.17158 -9.96114 -9.62820 -8.74340 -8.33044 -7.45732 -6.34452 -4.03186 0.13848 2.75958 3.18655 3.26157 3.30757 3.34920 3.43896 3.72441 3.82562 4.06521 4.25936 4.53456 4.61952 4.77376 4.84261 4.87330 5.00107 5.13770 5.19003 5.37811 5.45649 5.55562 5.71346 5.76820 5.93313 5.97301 6.11264 6.26957 6.28865 6.37465 6.43150 7.52566 8.06953 8.11678 8.85929 8.95503 9.43939 10.02153 10.73718 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.006591 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.601554 B = 4247.364363 C = 5035.029726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C 0.192 3.808 4 N -0.444 5.444 5 C -0.357 4.357 6 H 0.079 0.921 7 C 0.086 3.914 8 N -0.836 5.836 9 Si 0.906 3.094 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.502 3.498 14 O -0.544 6.544 15 C -0.100 4.100 16 H 0.098 0.902 17 C -0.125 4.125 18 C -0.106 4.106 19 C -0.605 4.605 20 S 2.411 3.589 21 O -0.950 6.950 22 O -0.940 6.940 23 C -0.574 4.574 24 H 0.210 0.790 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.268 0.732 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 -5.187 8.318 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.173 4.173 3 C 0.069 3.931 4 N -0.165 5.165 5 C -0.482 4.482 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.468 5.468 9 Si 0.732 3.268 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.423 6.423 15 C -0.123 4.123 16 H 0.116 0.884 17 C -0.163 4.163 18 C -0.144 4.144 19 C -0.734 4.734 20 S 2.594 3.406 21 O -0.947 6.947 22 O -0.937 6.937 23 C -0.705 4.705 24 H 0.227 0.773 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.775 -5.260 8.701 12.218 hybrid contribution -0.508 1.365 -0.660 1.599 sum -7.282 -3.896 8.041 11.527 Atomic orbital electron populations 1.24712 0.95691 1.01582 1.03129 1.24222 0.95353 0.99125 0.98595 1.18763 0.82930 0.88313 1.03092 1.43244 1.59076 1.08974 1.05164 1.18872 1.03229 1.29314 0.96821 0.90305 1.25188 0.93257 0.98173 0.95898 1.69983 1.01699 1.34788 1.40343 0.86389 0.77340 0.83626 0.79434 1.19736 1.21209 1.20184 1.19537 0.80948 0.87455 0.83195 1.90511 1.49707 1.16888 1.85179 1.21102 0.92511 1.02535 0.96104 0.88359 1.21576 0.97573 0.99582 0.97574 1.21278 0.98578 1.01375 0.93182 1.30238 1.21010 1.12798 1.09337 1.08191 0.77513 0.77158 0.77697 1.93570 1.55983 1.85955 1.59186 1.93564 1.86466 1.33157 1.80529 1.30102 1.07112 1.17196 1.16054 0.77296 0.88252 0.89732 0.92188 0.89521 0.90032 0.89753 0.89554 0.85184 0.84904 0.84232 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.52 19.25 29.55 0.57 -2.95 16 2 C -0.17 -3.02 13.64 -37.12 -0.51 -3.52 16 3 C 0.19 3.68 5.63 -6.83 -0.04 3.64 16 4 N -0.44 -10.57 2.45 -117.94 -0.29 -10.86 16 5 C -0.36 -9.52 8.98 -14.93 -0.13 -9.65 16 6 H 0.08 2.07 7.98 -52.49 -0.42 1.65 16 7 C 0.09 2.34 4.08 -17.47 -0.07 2.27 16 8 N -0.84 -23.45 12.96 55.50 0.72 -22.73 16 9 Si 0.91 21.57 29.64 -169.99 -5.04 16.53 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.50 11.71 5.68 -10.99 -0.06 11.65 16 14 O -0.54 -14.78 15.48 5.54 0.09 -14.70 16 15 C -0.10 -1.72 2.04 -91.93 -0.19 -1.91 16 16 H 0.10 1.57 5.23 -51.93 -0.27 1.30 16 17 C -0.13 -1.73 4.91 -27.15 -0.13 -1.87 16 18 C -0.11 -1.10 5.73 -26.92 -0.15 -1.26 16 19 C -0.60 -5.90 6.35 37.18 0.24 -5.66 16 20 S 2.41 32.65 5.30 -107.50 -0.57 32.08 16 21 O -0.95 -15.63 18.10 -57.82 -1.05 -16.68 16 22 O -0.94 -15.17 17.95 -57.82 -1.04 -16.20 16 23 C -0.57 -9.13 5.45 37.21 0.20 -8.93 16 24 H 0.21 2.31 7.80 -54.08 -0.42 1.88 16 25 H 0.10 1.86 8.01 -51.93 -0.42 1.44 16 26 H 0.09 1.43 5.79 -51.93 -0.30 1.13 16 27 H 0.27 7.25 8.32 -40.82 -0.34 6.91 16 28 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 29 H 0.08 1.10 8.10 -51.92 -0.42 0.68 16 30 H 0.08 0.86 8.02 -51.93 -0.42 0.44 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.14 2.13 8.08 -51.93 -0.42 1.71 16 35 H 0.14 2.43 8.14 -51.93 -0.42 2.01 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -35.95 312.92 -7.07 -43.03 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.33 Total: 3.01 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -0.28 Total: -18.19 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.43 Total: -33.59 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -2.00 Total: -47.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.53 kcal Atomic # 16 Polarization: 32.65 SS G_CDS: -0.57 Total: 32.08 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.95 -7.07 -43.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846067189.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.023 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds