Wall clock time and date at job start Fri Apr 10 2020 14:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42896 * 113.40932 * 178.29388 * 3 2 1 5 5 C 1.53492 * 114.20900 * 45.09241 * 3 2 1 6 6 N 1.47064 * 87.98568 * 220.34441 * 5 3 2 7 7 S 1.65598 * 136.05968 * 207.08623 * 6 5 3 8 8 O 1.42092 * 104.28249 * 206.07182 * 7 6 5 9 9 O 1.42103 * 104.27561 * 333.92761 * 7 6 5 10 10 C 1.81404 * 104.44997 * 89.99792 * 7 6 5 11 11 C 1.53001 * 109.47009 * 173.93766 * 10 7 6 12 12 C 1.50700 * 115.54883 * 39.91647 * 11 10 7 13 13 H 1.08001 * 119.99928 * 264.78124 * 12 11 10 14 14 C 1.37878 * 120.00127 * 84.78577 * 12 11 10 15 15 N 1.31514 * 119.99745 * 353.00268 * 14 12 11 16 16 Si 1.86801 * 120.00138 * 173.00059 * 14 12 11 17 17 H 1.48493 * 109.47053 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47011 * 119.99959 * 16 14 12 19 19 H 1.48498 * 109.47018 * 239.99751 * 16 14 12 20 20 C 1.52996 * 117.49804 * 254.20529 * 11 10 7 21 21 C 1.52996 * 60.00143 * 252.51015 * 20 11 10 22 22 C 1.47069 * 87.88522 * 27.11829 * 6 5 3 23 23 H 4.46085 * 5.10234 * 179.97438 * 4 1 2 24 24 H 0.96704 * 114.00427 * 46.80047 * 4 3 2 25 25 H 1.08998 * 113.46617 * 105.56181 * 5 3 2 26 26 H 1.08997 * 113.46622 * 335.12237 * 5 3 2 27 27 H 1.08998 * 109.47141 * 293.93952 * 10 7 6 28 28 H 1.08994 * 109.46740 * 53.94026 * 10 7 6 29 29 H 0.97002 * 120.00019 * 185.02028 * 15 14 12 30 30 H 1.08997 * 117.50279 * 0.02562 * 20 11 10 31 31 H 1.09007 * 117.49780 * 145.02423 * 20 11 10 32 32 H 1.08998 * 117.50508 * 252.51353 * 21 20 11 33 33 H 1.09004 * 117.49275 * 107.48955 * 21 20 11 34 34 H 1.09000 * 113.46447 * 87.65856 * 22 6 5 35 35 H 1.08999 * 113.46838 * 218.03862 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2131 1.3117 -0.0390 5 6 3.2758 -0.9874 -0.9915 6 7 4.2764 -1.3032 0.0389 7 16 5.8411 -1.8454 0.0552 8 8 5.9742 -2.4943 1.3123 9 8 5.9738 -2.5691 -1.1605 10 6 6.8441 -0.3346 0.0094 11 6 8.3214 -0.6981 0.1727 12 6 8.7699 -1.9384 -0.5563 13 1 8.8003 -2.8867 -0.0404 14 6 9.1417 -1.8625 -1.8818 15 7 8.9754 -0.7410 -2.5482 16 14 9.8816 -3.3527 -2.7312 17 1 9.9625 -4.4812 -1.7694 18 1 9.0267 -3.7422 -3.8813 19 1 11.2443 -3.0191 -3.2180 20 6 8.9792 -0.3931 1.5200 21 6 9.3229 0.4523 0.2920 22 6 3.2758 -0.9265 1.0487 23 1 -1.0502 -0.0004 -0.0002 24 1 2.8142 1.9317 0.5868 25 1 3.6982 -0.5068 -1.8739 26 1 2.6269 -1.8276 -1.2384 27 1 6.6975 0.1701 -0.9455 28 1 6.5411 0.3274 0.8205 29 1 9.1684 -0.7081 -3.4982 30 1 8.3595 0.0661 2.2901 31 1 9.7366 -1.0897 1.8794 32 1 10.3064 0.3119 -0.1565 33 1 8.9294 1.4682 0.2542 34 1 2.6268 -1.7506 1.3452 35 1 3.6983 -0.3952 1.9015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908228382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:50 Heat of formation + Delta-G solvation = 9.688977 kcal Electronic energy + Delta-G solvation = -21031.086369 eV Core-core repulsion = 17739.895846 eV Total energy + Delta-G solvation = -3291.190523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05019 -36.68869 -36.06483 -35.42838 -34.89513 -33.02643 -32.02189 -28.17418 -27.78599 -26.15214 -25.41695 -22.19620 -21.16716 -19.48171 -19.39333 -18.13946 -17.03310 -16.55129 -16.37296 -15.62974 -15.21272 -14.81418 -14.52598 -14.46377 -13.90456 -13.71129 -13.21916 -13.02546 -12.38968 -12.13943 -11.80268 -11.74472 -11.41635 -11.11334 -11.04366 -10.98967 -10.95448 -10.87533 -10.65508 -10.48177 -10.31783 -10.08487 -9.90461 -9.67937 -9.02247 -8.81634 -8.51276 -8.06894 -6.12834 -4.27676 1.10393 2.39114 2.42678 3.32735 3.38918 3.41912 3.47101 3.77163 3.98176 4.40161 4.42525 4.73751 4.80263 4.97638 5.17528 5.19179 5.38187 5.43362 5.54585 5.64382 5.72640 5.79730 5.90164 6.33379 6.34972 6.43087 6.58376 6.67400 6.74047 7.00534 7.22302 7.24609 7.37635 7.42450 7.81746 8.21865 8.81295 9.49376 10.94825 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.005724 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.952283 B = 4890.606066 C = 5229.611031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.208 4.208 3 C 0.195 3.805 4 O -0.516 6.516 5 C 0.149 3.851 6 N -1.046 6.046 7 S 2.644 3.356 8 O -0.969 6.969 9 O -0.935 6.935 10 C -0.549 4.549 11 C 0.048 3.952 12 C -0.544 4.544 13 H 0.069 0.931 14 C 0.097 3.903 15 N -0.866 5.866 16 Si 0.893 3.107 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.282 1.282 20 C -0.204 4.204 21 C -0.143 4.143 22 C 0.114 3.886 23 H 0.222 0.778 24 H 0.384 0.616 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 4.757 5.048 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.209 4.209 3 C 0.152 3.848 4 O -0.321 6.321 5 C 0.023 3.977 6 N -0.881 5.881 7 S 2.744 3.256 8 O -0.960 6.960 9 O -0.925 6.925 10 C -0.682 4.682 11 C 0.046 3.954 12 C -0.581 4.581 13 H 0.088 0.912 14 C -0.110 4.110 15 N -0.500 5.500 16 Si 0.719 3.281 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.208 1.208 20 C -0.241 4.241 21 C -0.182 4.182 22 C -0.013 4.013 23 H 0.238 0.762 24 H 0.232 0.768 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.995 3.568 4.441 15.110 hybrid contribution -0.141 0.363 -0.159 0.420 sum -14.136 3.930 4.283 15.284 Atomic orbital electron populations 1.25040 0.95813 0.98062 0.99680 1.23288 0.94182 1.02159 1.01288 1.19350 0.81065 0.85040 0.99387 1.86657 1.62022 1.19347 1.64120 1.22429 0.88370 0.94462 0.92434 1.60683 1.26689 1.85456 1.15279 1.04225 0.70476 0.76846 0.74026 1.93466 1.84900 1.72624 1.45043 1.93526 1.83689 1.68542 1.46788 1.29914 1.10588 1.18562 1.09106 1.18222 0.85717 0.96766 0.94734 1.20637 1.48622 0.92658 0.96207 0.91249 1.24909 0.93252 0.95812 0.97077 1.69967 1.45768 1.25777 1.08460 0.86509 0.78524 0.83062 0.79966 1.19208 1.20298 1.20821 1.23122 1.04864 1.04679 0.91484 1.22523 1.01246 0.94261 1.00138 1.22994 0.89130 0.96544 0.92597 0.76163 0.76807 0.88902 0.88439 0.85306 0.88510 0.92576 0.91281 0.89700 0.89636 0.91573 0.89079 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 19.25 29.55 0.57 -0.79 16 2 C -0.21 -2.12 12.75 -37.12 -0.47 -2.59 16 3 C 0.20 2.33 1.92 -92.90 -0.18 2.15 16 4 O -0.52 -6.08 13.53 -35.23 -0.48 -6.56 16 5 C 0.15 2.11 8.09 -8.51 -0.07 2.04 16 6 N -1.05 -17.81 4.10 -125.19 -0.51 -18.32 16 7 S 2.64 58.98 5.14 -107.50 -0.55 58.43 16 8 O -0.97 -23.37 18.07 -57.54 -1.04 -24.41 16 9 O -0.93 -24.17 17.20 -57.54 -0.99 -25.16 16 10 C -0.55 -12.17 6.29 37.16 0.23 -11.94 16 11 C 0.05 1.20 1.64 -155.66 -0.26 0.95 16 12 C -0.54 -15.29 6.89 -34.44 -0.24 -15.52 16 13 H 0.07 2.00 7.82 -52.49 -0.41 1.59 16 14 C 0.10 2.73 5.39 -17.82 -0.10 2.63 16 15 N -0.87 -24.52 12.96 55.43 0.72 -23.80 16 16 Si 0.89 22.24 29.55 -169.99 -5.02 17.22 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.20 -4.55 9.88 -26.73 -0.26 -4.81 16 21 C -0.14 -3.33 9.50 -26.73 -0.25 -3.59 16 22 C 0.11 1.47 8.09 -8.51 -0.07 1.40 16 23 H 0.22 0.93 7.80 -54.08 -0.42 0.51 16 24 H 0.38 2.72 9.01 45.56 0.41 3.13 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 27 H 0.13 2.94 8.14 -51.93 -0.42 2.52 16 28 H 0.10 1.82 7.95 -51.93 -0.41 1.41 16 29 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 30 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 31 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 32 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -35.21 325.56 -7.83 -43.04 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.77 Total: 4.72 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -1.09 Total: -30.06 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.20 Total: -42.12 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -2.51 Total: -56.13 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 58.98 SS G_CDS: -0.55 Total: 58.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.21 -7.83 -43.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908228382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.728 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds