Wall clock time and date at job start Fri Apr 10 2020 14:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42896 * 113.40932 * 178.29388 * 3 2 1 5 5 C 1.53492 * 114.20900 * 45.09241 * 3 2 1 6 6 N 1.47064 * 87.98568 * 220.34441 * 5 3 2 7 7 S 1.65598 * 136.05968 * 207.08623 * 6 5 3 8 8 O 1.42092 * 104.28249 * 206.07182 * 7 6 5 9 9 O 1.42103 * 104.27561 * 333.92761 * 7 6 5 10 10 C 1.81404 * 104.44997 * 89.99792 * 7 6 5 11 11 C 1.53001 * 109.47009 * 173.93766 * 10 7 6 12 12 C 1.50700 * 115.54883 * 39.91647 * 11 10 7 13 13 H 1.08001 * 119.99928 * 264.78124 * 12 11 10 14 14 C 1.37878 * 120.00127 * 84.78577 * 12 11 10 15 15 N 1.31514 * 119.99745 * 353.00268 * 14 12 11 16 16 Si 1.86801 * 120.00138 * 173.00059 * 14 12 11 17 17 H 1.48493 * 109.47053 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47011 * 119.99959 * 16 14 12 19 19 H 1.48498 * 109.47018 * 239.99751 * 16 14 12 20 20 C 1.52996 * 117.49804 * 254.20529 * 11 10 7 21 21 C 1.52996 * 60.00143 * 252.51015 * 20 11 10 22 22 C 1.47069 * 87.88522 * 27.11829 * 6 5 3 23 23 H 4.46085 * 5.10234 * 179.97438 * 4 1 2 24 24 H 0.96704 * 114.00427 * 46.80047 * 4 3 2 25 25 H 1.08998 * 113.46617 * 105.56181 * 5 3 2 26 26 H 1.08997 * 113.46622 * 335.12237 * 5 3 2 27 27 H 1.08998 * 109.47141 * 293.93952 * 10 7 6 28 28 H 1.08994 * 109.46740 * 53.94026 * 10 7 6 29 29 H 0.97002 * 120.00019 * 185.02028 * 15 14 12 30 30 H 1.08997 * 117.50279 * 0.02562 * 20 11 10 31 31 H 1.09007 * 117.49780 * 145.02423 * 20 11 10 32 32 H 1.08998 * 117.50508 * 252.51353 * 21 20 11 33 33 H 1.09004 * 117.49275 * 107.48955 * 21 20 11 34 34 H 1.09000 * 113.46447 * 87.65856 * 22 6 5 35 35 H 1.08999 * 113.46838 * 218.03862 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2131 1.3117 -0.0390 5 6 3.2758 -0.9874 -0.9915 6 7 4.2764 -1.3032 0.0389 7 16 5.8411 -1.8454 0.0552 8 8 5.9742 -2.4943 1.3123 9 8 5.9738 -2.5691 -1.1605 10 6 6.8441 -0.3346 0.0094 11 6 8.3214 -0.6981 0.1727 12 6 8.7699 -1.9384 -0.5563 13 1 8.8003 -2.8867 -0.0404 14 6 9.1417 -1.8625 -1.8818 15 7 8.9754 -0.7410 -2.5482 16 14 9.8816 -3.3527 -2.7312 17 1 9.9625 -4.4812 -1.7694 18 1 9.0267 -3.7422 -3.8813 19 1 11.2443 -3.0191 -3.2180 20 6 8.9792 -0.3931 1.5200 21 6 9.3229 0.4523 0.2920 22 6 3.2758 -0.9265 1.0487 23 1 -1.0502 -0.0004 -0.0002 24 1 2.8142 1.9317 0.5868 25 1 3.6982 -0.5068 -1.8739 26 1 2.6269 -1.8276 -1.2384 27 1 6.6975 0.1701 -0.9455 28 1 6.5411 0.3274 0.8205 29 1 9.1684 -0.7081 -3.4982 30 1 8.3595 0.0661 2.2901 31 1 9.7366 -1.0897 1.8794 32 1 10.3064 0.3119 -0.1565 33 1 8.9294 1.4682 0.2542 34 1 2.6268 -1.7506 1.3452 35 1 3.6983 -0.3952 1.9015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908228382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:49 Heat of formation + Delta-G solvation = -18.474588 kcal Electronic energy + Delta-G solvation = -21032.307633 eV Core-core repulsion = 17739.895846 eV Total energy + Delta-G solvation = -3292.411787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06939 -38.55687 -37.90123 -36.75503 -36.38268 -34.12594 -33.73018 -29.91328 -28.97207 -27.49003 -27.20043 -23.25081 -22.97341 -21.31987 -20.31405 -19.66102 -18.55236 -18.26516 -17.33163 -17.07027 -16.88938 -16.60428 -16.02576 -15.70226 -15.42560 -15.19149 -14.86384 -14.33223 -13.96363 -13.75621 -13.50630 -13.09345 -12.95703 -12.92323 -12.84848 -12.83571 -12.45074 -12.42877 -12.12293 -11.95767 -11.81167 -11.60744 -11.48395 -10.90487 -10.76792 -10.55189 -10.24818 -9.88052 -8.24901 -6.43196 -0.57617 1.33101 1.38003 1.47017 1.68147 1.75500 1.93364 2.37709 2.91084 3.03504 3.05858 3.16216 3.29040 3.38662 3.56952 3.86969 4.10744 4.19000 4.41601 4.46561 4.54369 4.57732 4.59559 4.76208 4.83389 4.93731 4.97630 5.04897 5.18309 5.35635 5.39977 5.59313 5.66539 6.18178 6.60722 6.66675 6.73699 7.34796 8.82453 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.005724 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.952283 B = 4890.606066 C = 5229.611031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.255 4.255 3 C 0.218 3.782 4 O -0.534 6.534 5 C 0.133 3.867 6 N -1.056 6.056 7 S 2.658 3.342 8 O -0.996 6.996 9 O -0.984 6.984 10 C -0.541 4.541 11 C 0.008 3.992 12 C -0.558 4.558 13 H 0.049 0.951 14 C 0.057 3.943 15 N -0.885 5.885 16 Si 0.930 3.070 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.187 4.187 21 C -0.139 4.139 22 C 0.106 3.894 23 H 0.258 0.742 24 H 0.403 0.597 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.267 0.733 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.022 5.811 6.028 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.256 4.256 3 C 0.174 3.826 4 O -0.343 6.343 5 C 0.008 3.992 6 N -0.894 5.894 7 S 2.759 3.241 8 O -0.987 6.987 9 O -0.974 6.974 10 C -0.675 4.675 11 C 0.006 3.994 12 C -0.595 4.595 13 H 0.067 0.933 14 C -0.148 4.148 15 N -0.520 5.520 16 Si 0.755 3.245 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.224 4.224 21 C -0.178 4.178 22 C -0.019 4.019 23 H 0.275 0.725 24 H 0.255 0.745 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.068 4.628 5.438 17.583 hybrid contribution 0.354 0.085 -0.421 0.557 sum -15.714 4.713 5.016 17.156 Atomic orbital electron populations 1.25905 0.96459 0.95343 0.96668 1.22999 0.93965 1.04702 1.03943 1.18792 0.82274 0.84448 0.97055 1.86604 1.62845 1.19738 1.65098 1.22797 0.87958 0.96193 0.92277 1.60140 1.25912 1.85200 1.18151 1.03357 0.71434 0.76734 0.72582 1.93417 1.85960 1.73629 1.45655 1.93455 1.85138 1.70334 1.48511 1.29777 1.08949 1.18955 1.09797 1.18388 0.87493 0.96597 0.96894 1.20775 1.48801 0.93255 0.96693 0.93301 1.25482 0.93748 0.97865 0.97708 1.70006 1.46607 1.26726 1.08667 0.85930 0.78736 0.80802 0.79025 1.19423 1.20433 1.18962 1.23204 1.04287 1.03734 0.91170 1.22462 0.99865 0.94839 1.00668 1.23385 0.88141 0.97633 0.92712 0.72543 0.74531 0.89980 0.86704 0.86450 0.85083 0.92382 0.88073 0.89927 0.91585 0.89630 0.87356 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 19.25 74.32 1.43 -0.09 16 2 C -0.25 -4.46 12.75 31.13 0.40 -4.06 16 3 C 0.22 4.80 1.92 -12.27 -0.02 4.78 16 4 O -0.53 -11.63 13.53 -148.98 -2.02 -13.65 16 5 C 0.13 3.69 8.09 83.18 0.67 4.36 16 6 N -1.06 -35.37 4.10 -550.46 -2.26 -37.63 16 7 S 2.66 119.80 5.14 -56.49 -0.29 119.51 16 8 O -1.00 -48.29 18.07 -127.65 -2.31 -50.60 16 9 O -0.98 -52.59 17.20 -127.65 -2.20 -54.78 16 10 C -0.54 -23.81 6.29 71.98 0.45 -23.35 16 11 C 0.01 0.42 1.64 -52.93 -0.09 0.34 16 12 C -0.56 -31.99 6.89 25.60 0.18 -31.82 16 13 H 0.05 2.92 7.82 -2.91 -0.02 2.89 16 14 C 0.06 3.26 5.39 84.66 0.46 3.71 16 15 N -0.89 -50.87 12.96 21.45 0.28 -50.59 16 16 Si 0.93 46.04 29.55 68.60 2.03 48.07 16 17 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.19 -8.05 9.88 30.59 0.30 -7.74 16 21 C -0.14 -6.40 9.50 30.59 0.29 -6.11 16 22 C 0.11 2.55 8.09 83.18 0.67 3.23 16 23 H 0.26 0.78 7.80 -4.41 -0.03 0.75 16 24 H 0.40 4.80 9.01 -74.05 -0.67 4.13 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.12 2.70 8.09 -2.39 -0.02 2.68 16 27 H 0.12 5.41 8.14 -2.39 -0.02 5.39 16 28 H 0.13 4.69 7.95 -2.39 -0.02 4.67 16 29 H 0.27 14.54 8.32 -92.71 -0.77 13.77 16 30 H 0.10 3.67 8.08 -2.39 -0.02 3.65 16 31 H 0.08 3.55 8.14 -2.38 -0.02 3.53 16 32 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 3.54 8.14 -2.38 -0.02 3.52 16 34 H 0.11 2.20 8.09 -2.39 -0.02 2.18 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -77.19 325.56 -1.59 -78.78 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.43 Total: 17.66 kcal Atomic # 6 Polarization: -61.51 SS G_CDS: 4.74 Total: -56.76 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -1.98 Total: -88.22 kcal Atomic # 8 Polarization: -112.51 SS G_CDS: -6.52 Total: -119.03 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 119.80 SS G_CDS: -0.29 Total: 119.51 kcal Total: -77.19 -1.59 -78.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908228382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.303 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds