Wall clock time and date at job start Fri Apr 10 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38284 * 119.97261 * 2 1 4 4 C 1.38239 * 120.11218 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.97206 * 180.02562 * 4 3 2 6 6 C 1.38167 * 120.05372 * 0.02562 * 4 3 2 7 7 C 1.50704 * 120.02733 * 179.97438 * 6 4 3 8 8 N 1.46497 * 109.47108 * 89.99782 * 7 6 4 9 9 S 1.65608 * 119.99652 * 164.99992 * 8 7 6 10 10 O 1.42104 * 106.39724 * 178.54027 * 9 8 7 11 11 O 1.42097 * 106.40199 * 311.45938 * 9 8 7 12 12 C 1.76195 * 107.21632 * 65.00196 * 9 8 7 13 13 H 1.08001 * 120.00866 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99874 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00033 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00076 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47359 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47176 * 119.99883 * 16 14 12 19 19 H 1.48507 * 109.47256 * 239.99728 * 16 14 12 20 20 C 1.38708 * 119.94313 * 0.22867 * 6 4 3 21 21 O 1.35901 * 120.05413 * 179.72114 * 20 6 4 22 22 C 1.38120 * 119.96702 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.46712 * 89.99645 * 1 2 3 24 24 H 1.08998 * 109.47120 * 210.00316 * 1 2 3 25 25 H 1.09004 * 109.47106 * 330.00162 * 1 2 3 26 26 H 1.08004 * 119.94252 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.46865 * 270.02211 * 5 4 3 28 28 H 1.08997 * 109.47342 * 30.02286 * 5 4 3 29 29 H 1.09006 * 109.46734 * 150.02682 * 5 4 3 30 30 H 1.09005 * 109.46813 * 330.00103 * 7 6 4 31 31 H 1.09000 * 109.47056 * 210.00470 * 7 6 4 32 32 H 0.96997 * 120.00126 * 344.99915 * 8 7 6 33 33 H 0.96997 * 119.99891 * 180.02562 * 15 14 12 34 34 H 0.96710 * 113.99710 * 89.99851 * 21 20 6 35 35 H 1.07997 * 120.03113 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.3300 2.5086 0.0011 6 6 4.2752 0.0070 0.0005 7 6 5.7822 0.0114 0.0005 8 7 6.2705 0.0129 1.3817 9 16 7.8537 -0.3537 1.7005 10 8 8.0180 -0.2332 3.1069 11 8 8.1416 -1.5464 0.9838 12 6 8.8390 0.9135 0.9741 13 1 8.3671 1.7270 0.4430 14 6 10.2126 0.8668 1.0835 15 7 10.7874 -0.1235 1.7306 16 14 11.2573 2.2099 0.3127 17 1 10.3756 3.2016 -0.3539 18 1 12.0531 2.8856 1.3690 19 1 12.1738 1.6101 -0.6901 20 6 3.5845 -1.1958 -0.0048 21 8 4.2657 -2.3718 -0.0105 22 6 2.1970 -1.1966 0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6565 2.1324 -0.0004 27 1 4.5108 2.8242 -1.0264 28 1 3.7387 3.2663 0.5152 29 1 5.2828 2.3807 0.5149 30 1 6.1429 0.9025 -0.5133 31 1 6.1481 -0.8775 -0.5134 32 1 5.6666 0.2286 2.1094 33 1 11.7537 -0.1561 1.8079 34 1 4.4632 -2.7162 0.8713 35 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002932.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:09 Heat of formation + Delta-G solvation = -125.283296 kcal Electronic energy + Delta-G solvation = -20578.801395 eV Core-core repulsion = 17281.758035 eV Total energy + Delta-G solvation = -3297.043360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10198 -36.88809 -35.41061 -35.04275 -33.93103 -33.11245 -32.65177 -30.60452 -27.81899 -27.05502 -26.12166 -23.94204 -21.93642 -20.26065 -19.00305 -17.67882 -17.45736 -16.43537 -16.33990 -15.78344 -15.13088 -14.81563 -14.47462 -14.04046 -13.89817 -13.41402 -13.32629 -13.16389 -13.07023 -12.64659 -12.59508 -12.18869 -11.96579 -11.45340 -11.38848 -11.26889 -11.22709 -11.13144 -10.58130 -10.57335 -10.27408 -10.16781 -10.14495 -9.24886 -9.00348 -8.54823 -8.49845 -8.41086 -6.69315 -5.30947 1.21607 1.30466 2.39368 3.06193 3.14669 3.21361 3.55959 4.08029 4.30433 4.65082 4.70960 4.77420 4.88914 4.98741 5.15629 5.26056 5.37332 5.42154 5.51816 5.68285 5.73061 5.75531 5.85840 5.92996 6.02748 6.16733 6.27807 6.39785 6.47520 6.52446 6.69620 6.83761 6.88976 7.33071 7.80798 7.89973 7.98972 8.90169 10.24930 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.027238 B = 0.004873 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.721963 B = 5744.266078 C = 6327.120065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.050 4.050 5 C -0.126 4.126 6 C -0.122 4.122 7 C 0.167 3.833 8 N -1.133 6.133 9 S 2.714 3.286 10 O -1.007 7.007 11 O -1.004 7.004 12 C -1.020 5.020 13 H 0.102 0.898 14 C 0.133 3.867 15 N -0.845 5.845 16 Si 0.920 3.080 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.131 3.869 21 O -0.493 6.493 22 C -0.158 4.158 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.401 0.599 33 H 0.290 0.710 34 H 0.394 0.606 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.012 3.183 -3.842 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.071 4.071 3 C -0.154 4.154 4 C -0.050 4.050 5 C -0.182 4.182 6 C -0.124 4.124 7 C 0.041 3.959 8 N -0.887 5.887 9 S 2.814 3.186 10 O -0.998 6.998 11 O -0.994 6.994 12 C -1.154 5.154 13 H 0.121 0.879 14 C -0.085 4.085 15 N -0.475 5.475 16 Si 0.744 3.256 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.196 1.196 20 C 0.086 3.914 21 O -0.303 6.303 22 C -0.177 4.177 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.457 2.308 -4.057 17.106 hybrid contribution 0.414 1.207 0.073 1.278 sum -16.042 3.515 -3.984 16.899 Atomic orbital electron populations 1.20778 0.91112 1.02706 1.02286 1.19724 0.95900 0.92645 0.98793 1.20876 0.93341 0.97498 1.03683 1.19740 0.93403 0.94811 0.97093 1.20949 1.01100 0.93341 1.02826 1.20263 0.96402 0.92254 1.03522 1.19893 0.88688 1.03114 0.84228 1.56058 1.30963 1.89755 1.11934 1.00429 0.70003 0.74979 0.73170 1.93376 1.84493 1.88461 1.33456 1.93366 1.82772 1.48542 1.74721 1.30579 1.03893 1.29052 1.51851 0.87939 1.24745 0.97348 0.95489 0.90930 1.69904 1.13493 1.29314 1.34797 0.86142 0.79432 0.80704 0.79324 1.18619 1.19647 1.19611 1.18331 0.89518 0.85255 0.98329 1.84780 1.76165 1.35524 1.33873 1.21231 0.93283 0.98240 1.04917 0.91172 0.91589 0.91510 0.85974 0.90791 0.91479 0.89894 0.91247 0.89251 0.76897 0.89957 0.74888 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.07 -0.78 5.88 -104.64 -0.62 -1.39 16 3 C -0.14 -1.55 9.35 -39.56 -0.37 -1.92 16 4 C -0.05 -0.65 5.88 -104.65 -0.62 -1.27 16 5 C -0.13 -1.49 9.19 36.01 0.33 -1.16 16 6 C -0.12 -1.86 5.29 -104.47 -0.55 -2.41 16 7 C 0.17 2.96 5.32 -5.19 -0.03 2.93 16 8 N -1.13 -22.10 5.94 -11.65 -0.07 -22.17 16 9 S 2.71 70.94 5.02 -107.50 -0.54 70.40 16 10 O -1.01 -29.24 18.02 -57.17 -1.03 -30.27 16 11 O -1.00 -29.06 17.49 -57.17 -1.00 -30.06 16 12 C -1.02 -27.77 9.72 30.60 0.30 -27.47 16 13 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 14 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 15 N -0.85 -24.85 13.19 55.43 0.73 -24.12 16 16 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 C 0.13 1.91 6.68 -39.22 -0.26 1.65 16 21 O -0.49 -7.38 12.55 -19.43 -0.24 -7.62 16 22 C -0.16 -1.95 9.64 -39.43 -0.38 -2.33 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.46 8.08 -51.93 -0.42 0.05 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.08 1.11 6.66 -51.93 -0.35 0.77 16 30 H 0.07 1.16 6.70 -51.93 -0.35 0.81 16 31 H 0.09 1.73 7.13 -51.93 -0.37 1.36 16 32 H 0.40 6.89 8.64 -34.48 -0.30 6.59 16 33 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.39 4.65 9.06 45.56 0.41 5.06 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -35.81 316.46 -7.78 -43.59 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.44 Total: 10.33 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: -1.93 Total: -30.31 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.66 Total: -46.29 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -2.27 Total: -67.95 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 70.94 SS G_CDS: -0.54 Total: 70.40 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.81 -7.78 -43.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002932.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.697 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds