Wall clock time and date at job start Fri Apr 10 2020 14:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38284 * 119.97261 * 2 1 4 4 C 1.38239 * 120.11218 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.97206 * 180.02562 * 4 3 2 6 6 C 1.38167 * 120.05372 * 0.02562 * 4 3 2 7 7 C 1.50704 * 120.02733 * 179.97438 * 6 4 3 8 8 N 1.46497 * 109.47108 * 89.99782 * 7 6 4 9 9 S 1.65608 * 119.99652 * 164.99992 * 8 7 6 10 10 O 1.42104 * 106.39724 * 178.54027 * 9 8 7 11 11 O 1.42097 * 106.40199 * 311.45938 * 9 8 7 12 12 C 1.76195 * 107.21632 * 65.00196 * 9 8 7 13 13 H 1.08001 * 120.00866 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99874 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00033 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00076 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47359 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47176 * 119.99883 * 16 14 12 19 19 H 1.48507 * 109.47256 * 239.99728 * 16 14 12 20 20 C 1.38708 * 119.94313 * 0.22867 * 6 4 3 21 21 O 1.35901 * 120.05413 * 179.72114 * 20 6 4 22 22 C 1.38120 * 119.96702 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.46712 * 89.99645 * 1 2 3 24 24 H 1.08998 * 109.47120 * 210.00316 * 1 2 3 25 25 H 1.09004 * 109.47106 * 330.00162 * 1 2 3 26 26 H 1.08004 * 119.94252 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.46865 * 270.02211 * 5 4 3 28 28 H 1.08997 * 109.47342 * 30.02286 * 5 4 3 29 29 H 1.09006 * 109.46734 * 150.02682 * 5 4 3 30 30 H 1.09005 * 109.46813 * 330.00103 * 7 6 4 31 31 H 1.09000 * 109.47056 * 210.00470 * 7 6 4 32 32 H 0.96997 * 120.00126 * 344.99915 * 8 7 6 33 33 H 0.96997 * 119.99891 * 180.02562 * 15 14 12 34 34 H 0.96710 * 113.99710 * 89.99851 * 21 20 6 35 35 H 1.07997 * 120.03113 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.3300 2.5086 0.0011 6 6 4.2752 0.0070 0.0005 7 6 5.7822 0.0114 0.0005 8 7 6.2705 0.0129 1.3817 9 16 7.8537 -0.3537 1.7005 10 8 8.0180 -0.2332 3.1069 11 8 8.1416 -1.5464 0.9838 12 6 8.8390 0.9135 0.9741 13 1 8.3671 1.7270 0.4430 14 6 10.2126 0.8668 1.0835 15 7 10.7874 -0.1235 1.7306 16 14 11.2573 2.2099 0.3127 17 1 10.3756 3.2016 -0.3539 18 1 12.0531 2.8856 1.3690 19 1 12.1738 1.6101 -0.6901 20 6 3.5845 -1.1958 -0.0048 21 8 4.2657 -2.3718 -0.0105 22 6 2.1970 -1.1966 0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6565 2.1324 -0.0004 27 1 4.5108 2.8242 -1.0264 28 1 3.7387 3.2663 0.5152 29 1 5.2828 2.3807 0.5149 30 1 6.1429 0.9025 -0.5133 31 1 6.1481 -0.8775 -0.5134 32 1 5.6666 0.2286 2.1094 33 1 11.7537 -0.1561 1.8079 34 1 4.4632 -2.7162 0.8713 35 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002932.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:08 Heat of formation + Delta-G solvation = -154.563972 kcal Electronic energy + Delta-G solvation = -20580.071100 eV Core-core repulsion = 17281.758035 eV Total energy + Delta-G solvation = -3298.313065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13075 -37.94801 -37.42351 -36.54677 -36.13929 -35.17769 -33.83748 -31.60783 -28.86061 -28.26123 -27.97944 -25.12917 -22.96491 -21.29529 -20.99155 -19.38690 -18.77637 -18.29926 -17.44312 -17.39662 -16.74447 -16.27768 -15.94010 -15.78438 -15.19573 -14.73039 -14.44887 -14.24260 -14.01218 -13.98822 -13.72052 -13.43948 -13.31900 -13.08970 -13.01781 -12.68799 -12.51308 -12.42829 -12.30150 -12.27157 -12.22352 -12.01915 -11.32678 -11.26023 -11.00529 -10.22585 -9.51495 -9.44490 -8.75222 -7.48048 0.08803 0.33189 0.51593 1.34122 1.35338 1.52796 2.21463 2.56476 2.58995 3.08010 3.30630 3.65038 3.75272 3.85301 4.02625 4.16515 4.40370 4.49073 4.52849 4.60076 4.69093 4.72424 4.84005 4.88663 4.92292 5.03692 5.07993 5.20982 5.30186 5.36887 5.45008 5.58251 5.66499 5.90275 5.95807 6.33972 6.78018 6.78910 8.21616 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.027238 B = 0.004873 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.721963 B = 5744.266078 C = 6327.120065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.063 4.063 3 C -0.135 4.135 4 C -0.053 4.053 5 C -0.127 4.127 6 C -0.147 4.147 7 C 0.169 3.831 8 N -1.113 6.113 9 S 2.721 3.279 10 O -1.044 7.044 11 O -1.042 7.042 12 C -1.040 5.040 13 H 0.122 0.878 14 C 0.069 3.931 15 N -0.895 5.895 16 Si 0.991 3.009 17 H -0.245 1.245 18 H -0.260 1.260 19 H -0.261 1.261 20 C 0.112 3.888 21 O -0.511 6.511 22 C -0.164 4.164 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.413 0.587 33 H 0.299 0.701 34 H 0.402 0.598 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.031 5.441 -4.824 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.063 4.063 3 C -0.152 4.152 4 C -0.053 4.053 5 C -0.183 4.183 6 C -0.150 4.150 7 C 0.043 3.957 8 N -0.871 5.871 9 S 2.822 3.178 10 O -1.035 7.035 11 O -1.031 7.031 12 C -1.173 5.173 13 H 0.141 0.859 14 C -0.144 4.144 15 N -0.526 5.526 16 Si 0.809 3.191 17 H -0.167 1.167 18 H -0.184 1.184 19 H -0.185 1.185 20 C 0.067 3.933 21 O -0.323 6.323 22 C -0.182 4.182 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.170 0.830 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.246 0.754 33 H 0.109 0.891 34 H 0.260 0.740 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.500 4.553 -5.018 19.702 hybrid contribution 0.879 0.475 0.372 1.066 sum -17.621 5.027 -4.647 18.904 Atomic orbital electron populations 1.20861 0.88414 1.04031 1.03449 1.20170 0.97806 0.91918 0.96408 1.21219 0.92590 0.98962 1.02479 1.19938 0.94418 0.94396 0.96591 1.20994 1.00382 0.93401 1.03569 1.20098 0.94502 0.93646 1.06706 1.19908 0.91065 1.02283 0.82440 1.55396 1.28835 1.89349 1.13556 0.99851 0.71202 0.74590 0.72111 1.93313 1.85836 1.88802 1.35504 1.93312 1.84195 1.50500 1.75142 1.30932 1.04713 1.29637 1.52052 0.85947 1.26035 0.99017 0.98165 0.91151 1.69998 1.14479 1.31672 1.36498 0.85090 0.77728 0.77474 0.78798 1.16744 1.18385 1.18507 1.18604 0.90587 0.84791 0.99296 1.84745 1.76610 1.36068 1.34896 1.21440 0.92307 0.99729 1.04759 0.89909 0.90685 0.89879 0.83009 0.89738 0.89127 0.91917 0.90396 0.91698 0.75390 0.89134 0.73973 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 71.24 0.71 -0.59 16 2 C -0.06 -1.20 5.88 -19.88 -0.12 -1.31 16 3 C -0.13 -2.64 9.35 22.28 0.21 -2.43 16 4 C -0.05 -1.29 5.88 -19.88 -0.12 -1.40 16 5 C -0.13 -2.74 9.19 71.24 0.65 -2.09 16 6 C -0.15 -4.43 5.29 -19.77 -0.10 -4.54 16 7 C 0.17 6.11 5.32 85.64 0.46 6.56 16 8 N -1.11 -44.48 5.94 -190.78 -1.13 -45.62 16 9 S 2.72 146.92 5.02 -56.49 -0.28 146.64 16 10 O -1.04 -62.70 18.02 -128.00 -2.31 -65.01 16 11 O -1.04 -62.94 17.49 -128.00 -2.24 -65.18 16 12 C -1.04 -57.10 9.72 67.73 0.66 -56.44 16 13 H 0.12 5.99 7.81 -2.91 -0.02 5.96 16 14 C 0.07 3.85 5.46 84.65 0.46 4.31 16 15 N -0.89 -53.75 13.19 21.45 0.28 -53.47 16 16 Si 0.99 41.20 29.54 68.60 2.03 43.22 16 17 H -0.24 -9.36 7.11 99.48 0.71 -8.66 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 C 0.11 3.26 6.68 22.51 0.15 3.41 16 21 O -0.51 -15.83 12.55 -92.44 -1.16 -16.99 16 22 C -0.16 -3.78 9.64 22.37 0.22 -3.57 16 23 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 25 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 26 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 29 H 0.06 1.61 6.66 -2.38 -0.02 1.59 16 30 H 0.08 2.64 6.70 -2.38 -0.02 2.62 16 31 H 0.06 2.65 7.13 -2.39 -0.02 2.63 16 32 H 0.41 14.46 8.64 -96.74 -0.84 13.63 16 33 H 0.30 16.05 8.31 -92.71 -0.77 15.28 16 34 H 0.40 10.10 9.06 -74.05 -0.67 9.43 16 35 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -78.98 316.46 -2.00 -80.98 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.37 Total: 33.52 kcal Atomic # 6 Polarization: -61.27 SS G_CDS: 3.18 Total: -58.09 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -0.85 Total: -99.09 kcal Atomic # 8 Polarization: -141.48 SS G_CDS: -5.70 Total: -147.18 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 146.92 SS G_CDS: -0.28 Total: 146.64 kcal Total: -78.98 -2.00 -80.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002932.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.582 kcal (2) G-P(sol) polarization free energy of solvation -78.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds