Wall clock time and date at job start Fri Apr 10 2020 14:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86792 * 119.99984 * 2 1 4 4 H 1.48497 * 109.47289 * 240.00189 * 3 2 1 5 5 H 1.48506 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47087 * 119.99911 * 3 2 1 7 7 C 1.38750 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99949 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.34308 * 117.00350 * 180.02562 * 9 7 2 11 11 O 1.21214 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00383 * 180.02562 * 10 9 7 13 13 C 1.53001 * 109.47320 * 180.02562 * 12 10 9 14 14 N 1.46499 * 109.47269 * 179.97438 * 13 12 10 15 15 N 1.39730 * 119.96033 * 270.02198 * 14 13 12 16 16 N 1.28357 * 122.95267 * 179.97438 * 15 14 13 17 17 C 1.35631 * 121.96836 * 359.97438 * 16 15 14 18 18 C 1.39736 * 121.33710 * 179.97438 * 17 16 15 19 19 C 1.37637 * 119.74045 * 180.02562 * 18 17 16 20 20 C 1.38874 * 120.80775 * 0.02562 * 19 18 17 21 21 C 1.37755 * 120.54333 * 359.97438 * 20 19 18 22 22 C 1.39378 * 119.55863 * 359.97438 * 21 20 19 23 23 C 1.35405 * 119.95360 * 90.00225 * 14 13 12 24 24 O 1.21727 * 121.31814 * 359.74277 * 23 14 13 25 25 H 0.96993 * 120.00010 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47587 * 59.99535 * 12 10 9 27 27 H 1.08999 * 109.46710 * 299.99471 * 12 10 9 28 28 H 1.09000 * 109.47171 * 59.99279 * 13 12 10 29 29 H 1.08998 * 109.47238 * 300.00051 * 13 12 10 30 30 H 1.07996 * 120.12710 * 0.04541 * 18 17 16 31 31 H 1.08002 * 119.59254 * 180.02562 * 19 18 17 32 32 H 1.07998 * 119.72893 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.22243 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2834 2.7465 -0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8392 -0.0011 13 6 2.4346 -5.9486 -0.0004 14 7 1.7695 -7.2539 -0.0003 15 7 1.4518 -7.8751 1.2103 16 7 0.8694 -9.0170 1.2774 17 6 0.5165 -9.7095 0.1658 18 6 -0.1167 -10.9520 0.2542 19 6 -0.4600 -11.6267 -0.8953 20 6 -0.1843 -11.0881 -2.1453 21 6 0.4390 -9.8649 -2.2586 22 6 0.7940 -9.1648 -1.1069 23 6 1.4632 -7.8566 -1.1735 24 8 1.7251 -7.3335 -2.2409 25 1 -0.4850 0.8400 -0.0004 26 1 0.7584 -4.9295 -0.8913 27 1 0.7579 -4.9299 0.8887 28 1 3.0568 -5.8581 0.8900 29 1 3.0581 -5.8581 -0.8898 30 1 -0.3362 -11.3810 1.2207 31 1 -0.9496 -12.5867 -0.8242 32 1 -0.4610 -11.6327 -3.0360 33 1 0.6505 -9.4508 -3.2333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031639525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:23 Heat of formation + Delta-G solvation = -18.488431 kcal Electronic energy + Delta-G solvation = -21511.639420 eV Core-core repulsion = 17925.619781 eV Total energy + Delta-G solvation = -3586.019639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.54814 -39.21028 -38.74965 -37.96176 -35.64787 -34.68210 -32.19350 -32.07419 -31.39623 -30.71615 -26.45740 -25.64202 -24.99125 -23.37150 -22.56765 -20.00984 -19.87726 -19.07946 -17.77912 -17.36795 -16.62320 -16.19234 -15.77624 -15.53835 -15.35278 -15.05112 -14.48220 -14.39330 -14.30719 -13.95149 -13.33012 -13.27650 -13.06744 -12.60657 -12.48969 -12.29831 -11.95977 -11.60025 -11.34910 -11.06166 -10.76441 -10.47200 -10.39161 -10.35262 -10.25947 -9.82746 -9.68433 -9.12349 -8.75197 -8.58458 -6.41590 -4.09941 -0.34888 0.31269 1.54354 1.71754 2.27675 3.12512 3.19123 3.23367 3.36063 3.37542 3.48995 3.65251 3.93341 4.16253 4.33091 4.51916 4.64867 4.71968 4.96751 5.03062 5.06079 5.13317 5.34229 5.45407 5.54540 5.60732 5.65170 5.80030 5.85436 6.09643 6.14051 6.24459 6.70176 7.33188 7.38639 7.93701 8.00391 8.66529 9.06651 9.81835 10.76229 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.037661 B = 0.003016 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.294858 B = 9282.536044 C = 9389.826045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.383 4.383 8 H 0.097 0.903 9 O -0.211 6.211 10 C 0.405 3.595 11 O -0.557 6.557 12 C -0.119 4.119 13 C 0.137 3.863 14 N -0.450 5.450 15 N 0.096 4.904 16 N -0.211 5.211 17 C 0.063 3.937 18 C -0.073 4.073 19 C -0.086 4.086 20 C -0.107 4.107 21 C -0.051 4.051 22 C -0.151 4.151 23 C 0.524 3.476 24 O -0.494 6.494 25 H 0.270 0.730 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -23.623 -1.119 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.114 0.886 9 O -0.118 6.118 10 C 0.251 3.749 11 O -0.455 6.455 12 C -0.158 4.158 13 C 0.016 3.984 14 N -0.275 5.275 15 N 0.110 4.890 16 N -0.102 5.102 17 C -0.046 4.046 18 C -0.096 4.096 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.070 4.070 22 C -0.161 4.161 23 C 0.314 3.686 24 O -0.365 6.365 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.146 -22.857 -0.636 22.966 hybrid contribution 0.174 0.616 -1.163 1.328 sum -1.972 -22.241 -1.800 22.400 Atomic orbital electron populations 1.69989 1.06040 1.27868 1.46256 1.25359 0.95830 0.98930 0.96097 0.85717 0.78610 0.79306 0.79378 1.19454 1.20373 1.19411 1.21202 0.92414 0.79726 1.52607 0.88559 1.83865 1.39343 1.13353 1.75206 1.22641 0.86467 0.86845 0.78954 1.90569 1.15480 1.88110 1.51377 1.21342 0.98843 0.90235 1.05420 1.21658 0.94038 0.75761 1.06893 1.51293 1.51989 1.20479 1.03768 1.80289 1.01865 1.01799 1.05080 1.73966 1.10108 1.00963 1.25189 1.19675 1.00006 0.96644 0.88300 1.21026 0.96406 0.91866 1.00261 1.21393 0.97360 0.99995 0.91782 1.21416 0.97652 0.95170 0.98453 1.21154 0.94268 0.93609 0.97967 1.20638 1.04303 0.95980 0.95181 1.18764 0.79888 0.85696 0.84302 1.90927 1.52286 1.65739 1.27547 0.91973 0.88642 0.88234 0.87018 0.86930 0.83344 0.84103 0.84209 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.95 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.38 -11.45 9.64 30.92 0.30 -11.15 16 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.21 -6.12 9.75 -20.69 -0.20 -6.33 16 10 C 0.40 9.98 7.91 36.00 0.28 10.26 16 11 O -0.56 -14.65 15.22 -19.06 -0.29 -14.94 16 12 C -0.12 -2.22 6.14 -27.88 -0.17 -2.40 16 13 C 0.14 2.24 5.03 -4.04 -0.02 2.22 16 14 N -0.45 -6.82 3.52 -61.31 -0.22 -7.04 16 15 N 0.10 1.35 12.77 60.35 0.77 2.12 16 16 N -0.21 -2.69 11.61 32.27 0.37 -2.31 16 17 C 0.06 0.71 6.72 -84.51 -0.57 0.14 16 18 C -0.07 -0.55 10.02 -39.24 -0.39 -0.94 16 19 C -0.09 -0.48 10.00 -39.57 -0.40 -0.87 16 20 C -0.11 -0.67 10.02 -39.52 -0.40 -1.07 16 21 C -0.05 -0.48 9.67 -39.33 -0.38 -0.86 16 22 C -0.15 -1.86 5.90 -104.76 -0.62 -2.48 16 23 C 0.52 8.07 7.75 -12.38 -0.10 7.97 16 24 O -0.49 -8.80 16.33 5.16 0.08 -8.72 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 28 H 0.11 1.71 8.10 -51.93 -0.42 1.29 16 29 H 0.11 1.94 7.44 -51.93 -0.39 1.55 16 30 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 32 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 33 H 0.15 1.33 7.81 -52.49 -0.41 0.92 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -35.18 306.99 -4.49 -39.68 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -2.83 Total: -0.60 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.55 Total: 1.92 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 1.69 Total: -32.12 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.41 Total: -29.98 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.18 -4.49 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031639525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.187 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds