Wall clock time and date at job start Fri Apr 10 2020 14:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39832 * 120.07297 * 5.59692 * 3 2 1 5 5 C 1.37628 * 119.92371 * 180.02562 * 4 3 2 6 6 C 1.39196 * 120.07485 * 0.24661 * 5 4 3 7 7 N 1.39191 * 119.92667 * 179.72843 * 6 5 4 8 8 C 1.47477 * 110.99813 * 247.90261 * 7 6 5 9 9 C 1.53516 * 87.93235 * 138.70264 * 8 7 6 10 10 O 1.42895 * 114.34426 * 87.63566 * 9 8 7 11 11 C 1.50704 * 114.16636 * 220.33181 * 9 8 7 12 12 H 1.08000 * 119.99843 * 98.41102 * 11 9 8 13 13 C 1.37873 * 119.99804 * 278.40122 * 11 9 8 14 14 N 1.31519 * 120.00309 * 7.55251 * 13 11 9 15 15 Si 1.86808 * 120.00070 * 187.54936 * 13 11 9 16 16 H 1.48499 * 109.46766 * 94.99230 * 15 13 11 17 17 H 1.48498 * 109.47278 * 214.99305 * 15 13 11 18 18 H 1.48500 * 109.47097 * 334.99361 * 15 13 11 19 19 C 1.47482 * 110.99841 * 343.86947 * 7 6 5 20 20 C 1.39164 * 120.14940 * 359.49144 * 6 5 4 21 21 N 1.48014 * 119.95946 * 180.25440 * 20 6 5 22 22 O 1.21809 * 119.99793 * 187.20101 * 21 20 6 23 23 O 1.21801 * 120.00241 * 7.20061 * 21 20 6 24 24 C 1.37666 * 120.07493 * 0.51266 * 20 6 5 25 25 H 1.08002 * 120.03498 * 0.03351 * 4 3 2 26 26 H 1.07997 * 119.96345 * 179.97438 * 5 4 3 27 27 H 1.09004 * 113.47870 * 253.47083 * 8 7 6 28 28 H 1.09003 * 113.47657 * 23.93598 * 8 7 6 29 29 H 0.96705 * 113.99895 * 80.29878 * 10 9 8 30 30 H 0.96996 * 120.00172 * 179.97438 * 14 13 11 31 31 H 1.09003 * 113.47441 * 336.06971 * 19 7 6 32 32 H 1.08999 * 113.47359 * 106.53006 * 19 7 6 33 33 H 1.08006 * 120.03783 * 179.72121 * 24 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 -1.2034 -0.1180 5 6 4.6455 -1.1992 -0.1171 6 6 5.3394 0.0011 0.0062 7 7 6.7313 0.0011 0.0124 8 6 7.2539 0.3893 1.3357 9 6 8.3108 -0.7131 1.1801 10 8 9.4999 -0.2979 0.5052 11 6 8.5832 -1.4893 2.4427 12 1 8.1098 -2.4471 2.6005 13 6 9.4370 -0.9768 3.3963 14 7 9.8967 0.2495 3.2765 15 14 9.9407 -2.0243 4.8588 16 1 11.2356 -2.6905 4.5679 17 1 10.0863 -1.1617 6.0588 18 1 8.9005 -3.0534 5.1123 19 6 7.2587 -1.3531 0.2636 20 6 4.6447 1.2017 0.1184 21 7 5.3868 2.4762 0.2437 22 8 4.7860 3.5107 0.4732 23 8 6.5981 2.4906 0.1173 24 6 3.2680 1.2048 0.1183 25 1 2.7314 -2.1354 -0.2099 26 1 5.1878 -2.1288 -0.2078 27 1 7.6749 1.3945 1.3586 28 1 6.5527 0.2068 2.1501 29 1 10.1231 0.1834 1.0666 30 1 10.4970 0.6102 3.9475 31 1 6.5587 -2.0006 0.7917 32 1 7.6838 -1.8246 -0.6224 33 1 2.7294 2.1365 0.2099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302490414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:19 Heat of formation + Delta-G solvation = 66.492518 kcal Electronic energy + Delta-G solvation = -22726.887763 eV Core-core repulsion = 19144.553175 eV Total energy + Delta-G solvation = -3582.334588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.06469 -40.62729 -38.82627 -36.61845 -36.12849 -34.66385 -32.34427 -32.25931 -31.35641 -27.93066 -26.34422 -25.72951 -25.12535 -22.47791 -22.23551 -20.22421 -19.07351 -18.34759 -17.89180 -17.28016 -17.14578 -16.37147 -16.06334 -15.20774 -15.04497 -14.72165 -14.37884 -14.07769 -13.98520 -13.49638 -12.96119 -12.92505 -12.74452 -12.38392 -11.93618 -11.85478 -11.67059 -11.28727 -11.09267 -11.06487 -10.80636 -10.65765 -10.51698 -10.39111 -9.80620 -9.70493 -9.44893 -8.89446 -8.53716 -8.12013 -6.44664 -4.55263 -0.02018 0.38084 1.45546 1.63169 2.39489 2.52688 3.10654 3.19947 3.20648 3.36300 3.48947 3.90812 4.13395 4.30621 4.40685 4.61423 4.72566 4.85373 5.11404 5.25345 5.37557 5.50831 5.56348 5.69016 5.83964 5.87923 6.05806 6.23678 6.51924 6.60661 6.90424 7.02097 7.17279 7.36367 7.55626 7.73737 8.04792 8.46547 9.15645 9.26471 10.62056 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.005044 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.739088 B = 5549.499682 C = 6133.233753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.264 3.736 3 C -0.073 4.073 4 C 0.002 3.998 5 C -0.174 4.174 6 C 0.192 3.808 7 N -0.419 5.419 8 C -0.006 4.006 9 C 0.258 3.742 10 O -0.561 6.561 11 C -0.546 4.546 12 H 0.070 0.930 13 C 0.076 3.924 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.003 4.003 20 C -0.076 4.076 21 N 0.032 4.968 22 O -0.202 6.202 23 O -0.109 6.109 24 C 0.016 3.984 25 H 0.149 0.851 26 H 0.163 0.837 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.390 0.610 30 H 0.273 0.727 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -2.877 -4.443 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.052 4.052 3 C -0.078 4.078 4 C -0.019 4.019 5 C -0.195 4.195 6 C 0.086 3.914 7 N -0.130 5.130 8 C -0.130 4.130 9 C 0.216 3.784 10 O -0.370 6.370 11 C -0.584 4.584 12 H 0.089 0.911 13 C -0.128 4.128 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.130 4.130 20 C -0.163 4.163 21 N 0.548 4.452 22 O -0.404 6.404 23 O -0.333 6.333 24 C -0.006 4.006 25 H 0.166 0.834 26 H 0.180 0.820 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.242 0.758 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.761 -3.152 -5.481 12.480 hybrid contribution 0.738 -0.097 1.770 1.920 sum -10.023 -3.249 -3.710 11.170 Atomic orbital electron populations 1.81276 1.11717 1.06701 1.09354 1.25274 0.92081 0.94214 0.93598 1.15521 0.84848 0.93681 1.13793 1.21374 0.93781 0.97058 0.89713 1.21391 0.93827 0.97653 1.06599 1.19992 0.93774 0.90864 0.86818 1.65752 1.00595 1.16889 1.29762 1.25215 0.98787 1.05892 0.83071 1.19248 0.82230 0.88229 0.88654 1.86074 1.31337 1.77831 1.41780 1.21405 1.29115 1.05914 1.01966 0.91135 1.25069 0.94855 0.94692 0.98215 1.69659 1.32326 1.13693 1.36564 0.86401 0.79287 0.80154 0.81175 1.20142 1.20913 1.19640 1.24524 0.97851 0.89508 1.01071 1.20511 0.91662 0.84071 1.20097 1.43232 1.01376 1.01871 0.98724 1.94494 1.70445 1.21369 1.54067 1.94650 0.95035 1.92660 1.51002 1.20751 0.90995 0.99071 0.89800 0.83355 0.81978 0.87539 0.91351 0.75797 0.91646 0.89252 0.89228 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.40 18.54 41.84 0.78 -4.62 16 2 C 0.26 2.90 15.33 -22.47 -0.34 2.55 16 3 C -0.07 -0.74 5.74 -106.80 -0.61 -1.35 16 4 C 0.00 0.02 9.75 -39.21 -0.38 -0.36 16 5 C -0.17 -1.93 8.71 -39.45 -0.34 -2.27 16 6 C 0.19 2.89 5.23 -83.82 -0.44 2.45 16 7 N -0.42 -7.65 5.32 -180.57 -0.96 -8.61 16 8 C -0.01 -0.12 5.54 -7.55 -0.04 -0.17 16 9 C 0.26 5.73 1.42 -91.24 -0.13 5.60 16 10 O -0.56 -13.48 13.51 -35.23 -0.48 -13.96 16 11 C -0.55 -12.94 8.65 -34.44 -0.30 -13.24 16 12 H 0.07 1.61 7.83 -52.49 -0.41 1.20 16 13 C 0.08 1.84 5.33 -17.82 -0.10 1.75 16 14 N -0.88 -21.99 11.60 55.43 0.64 -21.35 16 15 Si 0.90 18.84 29.54 -169.99 -5.02 13.82 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C 0.00 -0.05 6.08 -7.55 -0.05 -0.10 16 20 C -0.08 -1.16 6.64 -79.81 -0.53 -1.69 16 21 N 0.03 0.58 4.37 34.03 0.15 0.73 16 22 O -0.20 -3.63 18.46 -29.46 -0.54 -4.18 16 23 O -0.11 -2.22 14.20 -29.46 -0.42 -2.63 16 24 C 0.02 0.19 9.25 -39.21 -0.36 -0.17 16 25 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 26 H 0.16 1.53 5.95 -52.49 -0.31 1.22 16 27 H 0.11 2.46 6.12 -51.93 -0.32 2.14 16 28 H 0.07 1.42 7.85 -51.93 -0.41 1.02 16 29 H 0.39 9.56 7.05 45.56 0.32 9.88 16 30 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.09 1.35 6.00 -51.93 -0.31 1.04 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.16 1.67 7.62 -52.48 -0.40 1.27 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -27.21 297.46 -6.81 -34.02 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -1.82 Total: 9.30 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.62 Total: -7.01 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.61 Total: -33.85 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -1.44 Total: -20.77 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.21 -6.81 -34.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302490414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.516 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds