Wall clock time and date at job start Fri Apr 10 2020 14:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39682 * 120.11389 * 96.88991 * 3 2 1 5 5 C 1.37973 * 119.99732 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.23534 * 359.97438 * 5 4 3 7 7 N 1.48004 * 119.88572 * 180.02562 * 6 5 4 8 8 O 1.21801 * 119.99808 * 0.02562 * 7 6 5 9 9 O 1.21802 * 120.00028 * 180.02562 * 7 6 5 10 10 C 1.38996 * 120.23017 * 0.02562 * 6 5 4 11 11 N 1.39706 * 120.00017 * 179.97438 * 10 6 5 12 12 C 1.47955 * 111.00322 * 240.00033 * 11 10 6 13 13 C 1.53928 * 86.18238 * 222.42027 * 12 11 10 14 14 O 1.42901 * 113.73501 * 269.25504 * 13 12 11 15 15 C 1.50702 * 113.73294 * 138.07873 * 13 12 11 16 16 H 1.08002 * 120.00299 * 1.90486 * 15 13 12 17 17 C 1.37884 * 119.99942 * 181.62045 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.48192 * 111.06648 * 140.56954 * 11 10 6 24 24 C 1.38668 * 119.99751 * 0.25699 * 10 6 5 25 25 H 1.07998 * 119.99978 * 0.03860 * 4 3 2 26 26 H 1.07995 * 119.87991 * 179.97438 * 5 4 3 27 27 H 1.09000 * 113.75794 * 108.09628 * 12 11 10 28 28 H 1.09003 * 113.76118 * 336.74358 * 12 11 10 29 29 H 0.96706 * 114.00053 * 178.09731 * 14 13 12 30 30 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 31 31 H 1.09002 * 113.76027 * 23.24247 * 23 11 10 32 32 H 1.08999 * 113.82236 * 251.81017 * 23 11 10 33 33 H 1.07999 * 120.11470 * 179.72257 * 24 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.1459 -1.1996 5 6 4.6485 0.1457 -1.1968 6 6 5.3422 0.0025 -0.0097 7 7 6.8223 0.0039 -0.0156 8 8 7.4269 0.1315 -1.0653 9 8 7.4356 -0.1225 1.0290 10 6 4.6547 -0.1427 1.1896 11 7 5.3606 -0.2876 2.3864 12 6 5.0327 -1.5721 3.0434 13 6 4.9913 -0.7714 4.3574 14 8 6.2463 -0.7187 5.0387 15 6 3.8472 -1.1496 5.2624 16 1 3.1705 -1.9410 4.9754 17 6 3.6677 -0.4894 6.4595 18 7 4.4917 0.4742 6.8089 19 14 2.2541 -0.9635 7.5847 20 1 1.4786 -2.0687 6.9666 21 1 2.7925 -1.4095 8.8949 22 1 1.3677 0.2106 7.7876 23 6 4.7080 0.4642 3.4841 24 6 3.2680 -0.1497 1.1972 25 1 2.7306 0.2586 -2.1291 26 1 5.1883 0.2577 -2.1254 27 1 5.8382 -2.3052 3.0010 28 1 4.0668 -1.9823 2.7484 29 1 6.2318 -0.1924 5.8498 30 1 4.3652 0.9390 7.6509 31 1 3.6470 0.6510 3.3183 32 1 5.2547 1.3551 3.7933 33 1 2.7319 -0.2669 2.1274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302775267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:13 Heat of formation + Delta-G solvation = 62.997024 kcal Electronic energy + Delta-G solvation = -22647.998566 eV Core-core repulsion = 19065.512402 eV Total energy + Delta-G solvation = -3582.486164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94491 -40.59220 -38.64279 -36.71605 -36.11056 -34.57711 -32.36946 -32.25645 -31.04079 -27.65214 -26.66595 -25.49711 -24.81344 -23.11327 -22.15377 -19.28228 -19.13144 -18.77709 -18.27730 -17.27539 -17.15544 -16.10402 -15.52484 -15.34078 -14.83218 -14.56668 -14.44032 -14.38809 -13.86435 -13.45726 -13.23195 -12.91886 -12.54012 -12.30886 -12.06142 -11.67999 -11.49503 -11.23574 -11.16210 -11.03720 -10.80040 -10.67362 -10.56728 -10.28354 -9.72018 -9.60381 -9.28009 -8.82598 -8.52878 -8.15805 -6.43303 -4.55017 -0.37164 0.67095 1.25447 1.65175 2.28223 2.49387 3.08791 3.19207 3.21441 3.30674 3.35697 3.88318 4.13318 4.26398 4.45677 4.65674 4.76340 4.82965 5.17105 5.30614 5.43728 5.58589 5.66323 5.73564 5.87572 5.98070 6.05023 6.41413 6.61983 6.67289 6.76804 7.07097 7.09745 7.55392 7.58739 7.77972 8.03286 8.48191 9.16983 9.47162 10.62657 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.006111 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.814101 B = 4580.542792 C = 6213.754558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.250 3.750 3 C 0.032 3.968 4 C -0.090 4.090 5 C -0.054 4.054 6 C -0.013 4.013 7 N 0.023 4.977 8 O -0.206 6.206 9 O -0.078 6.078 10 C 0.147 3.853 11 N -0.439 5.439 12 C 0.018 3.982 13 C 0.255 3.745 14 O -0.564 6.564 15 C -0.546 4.546 16 H 0.068 0.932 17 C 0.075 3.925 18 N -0.892 5.892 19 Si 0.902 3.098 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.281 1.281 23 C -0.016 4.016 24 C -0.111 4.111 25 H 0.153 0.847 26 H 0.161 0.839 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.390 0.610 30 H 0.273 0.727 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 0.270 -12.447 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.066 4.066 3 C 0.028 3.972 4 C -0.112 4.112 5 C -0.074 4.074 6 C -0.098 4.098 7 N 0.545 4.455 8 O -0.407 6.407 9 O -0.312 6.312 10 C 0.050 3.950 11 N -0.160 5.160 12 C -0.107 4.107 13 C 0.213 3.787 14 O -0.375 6.375 15 C -0.584 4.584 16 H 0.086 0.914 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.207 1.207 23 C -0.143 4.143 24 C -0.134 4.134 25 H 0.170 0.830 26 H 0.179 0.821 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.245 0.755 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.634 0.188 -13.107 13.602 hybrid contribution -1.026 0.170 1.140 1.544 sum -4.660 0.357 -11.966 12.847 Atomic orbital electron populations 1.81282 1.11718 1.07070 1.06715 1.25443 0.92356 0.94562 0.94266 1.16162 0.84911 1.01471 0.94658 1.21060 0.92618 1.00010 0.97469 1.20863 0.93886 0.95266 0.97335 1.21340 0.80734 1.12288 0.95479 1.43380 1.02864 0.98567 1.00659 1.94486 1.69013 1.55795 1.21386 1.94725 1.67791 1.48243 1.20441 1.19646 0.90500 0.91110 0.93768 1.67065 1.43102 1.08144 0.97709 1.24419 0.99914 0.91715 0.94665 1.19633 0.83928 0.87558 0.87630 1.86094 1.32062 1.75899 1.43465 1.21634 1.12042 1.20175 1.04517 0.91352 1.25054 0.96493 0.93825 0.97472 1.69422 1.37338 1.22655 1.23685 0.86371 0.81569 0.78624 0.80516 1.19544 1.20458 1.20704 1.25248 0.96966 1.01888 0.90157 1.22103 0.93669 0.98777 0.98875 0.82961 0.82101 0.89204 0.90856 0.75509 0.91678 0.91026 0.89463 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.37 18.54 41.84 0.78 -4.60 16 2 C 0.25 2.90 15.33 -22.47 -0.34 2.55 16 3 C 0.03 0.34 5.73 -106.96 -0.61 -0.27 16 4 C -0.09 -0.75 9.75 -39.14 -0.38 -1.14 16 5 C -0.05 -0.54 9.53 -39.68 -0.38 -0.92 16 6 C -0.01 -0.19 6.87 -79.67 -0.55 -0.74 16 7 N 0.02 0.38 4.45 34.10 0.15 0.54 16 8 O -0.21 -3.38 18.43 -29.46 -0.54 -3.93 16 9 O -0.08 -1.51 17.08 -29.46 -0.50 -2.02 16 10 C 0.15 2.25 5.16 -83.83 -0.43 1.82 16 11 N -0.44 -8.23 4.13 -174.39 -0.72 -8.95 16 12 C 0.02 0.35 7.17 -2.77 -0.02 0.33 16 13 C 0.25 5.77 1.40 -90.84 -0.13 5.64 16 14 O -0.56 -14.13 13.48 -35.23 -0.48 -14.60 16 15 C -0.55 -13.13 8.61 -34.44 -0.30 -13.42 16 16 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 18 N -0.89 -22.20 11.19 55.43 0.62 -21.58 16 19 Si 0.90 19.14 29.54 -169.99 -5.02 14.11 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 C -0.02 -0.32 7.13 -2.63 -0.02 -0.34 16 24 C -0.11 -1.44 7.58 -38.95 -0.30 -1.74 16 25 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 26 H 0.16 1.28 7.59 -52.49 -0.40 0.88 16 27 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.07 1.26 7.02 -51.93 -0.36 0.90 16 29 H 0.39 9.95 6.59 45.56 0.30 10.25 16 30 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.07 1.35 5.72 -51.93 -0.30 1.05 16 32 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.17 2.23 6.28 -52.49 -0.33 1.90 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -27.34 301.48 -6.62 -33.97 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -1.90 Total: 9.03 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.55 Total: -6.51 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.83 Total: -34.59 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.52 Total: -20.55 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.34 -6.62 -33.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302775267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.962 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds