Wall clock time and date at job start Fri Apr 10 2020 14:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39682 * 120.11389 * 96.88991 * 3 2 1 5 5 C 1.37973 * 119.99732 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.23534 * 359.97438 * 5 4 3 7 7 N 1.48004 * 119.88572 * 180.02562 * 6 5 4 8 8 O 1.21801 * 119.99808 * 0.02562 * 7 6 5 9 9 O 1.21802 * 120.00028 * 180.02562 * 7 6 5 10 10 C 1.38996 * 120.23017 * 0.02562 * 6 5 4 11 11 N 1.39706 * 120.00017 * 179.97438 * 10 6 5 12 12 C 1.47955 * 111.00322 * 240.00033 * 11 10 6 13 13 C 1.53928 * 86.18238 * 222.42027 * 12 11 10 14 14 O 1.42901 * 113.73501 * 269.25504 * 13 12 11 15 15 C 1.50702 * 113.73294 * 138.07873 * 13 12 11 16 16 H 1.08002 * 120.00299 * 1.90486 * 15 13 12 17 17 C 1.37884 * 119.99942 * 181.62045 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.48192 * 111.06648 * 140.56954 * 11 10 6 24 24 C 1.38668 * 119.99751 * 0.25699 * 10 6 5 25 25 H 1.07998 * 119.99978 * 0.03860 * 4 3 2 26 26 H 1.07995 * 119.87991 * 179.97438 * 5 4 3 27 27 H 1.09000 * 113.75794 * 108.09628 * 12 11 10 28 28 H 1.09003 * 113.76118 * 336.74358 * 12 11 10 29 29 H 0.96706 * 114.00053 * 178.09731 * 14 13 12 30 30 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 31 31 H 1.09002 * 113.76027 * 23.24247 * 23 11 10 32 32 H 1.08999 * 113.82236 * 251.81017 * 23 11 10 33 33 H 1.07999 * 120.11470 * 179.72257 * 24 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.1459 -1.1996 5 6 4.6485 0.1457 -1.1968 6 6 5.3422 0.0025 -0.0097 7 7 6.8223 0.0039 -0.0156 8 8 7.4269 0.1315 -1.0653 9 8 7.4356 -0.1225 1.0290 10 6 4.6547 -0.1427 1.1896 11 7 5.3606 -0.2876 2.3864 12 6 5.0327 -1.5721 3.0434 13 6 4.9913 -0.7714 4.3574 14 8 6.2463 -0.7187 5.0387 15 6 3.8472 -1.1496 5.2624 16 1 3.1705 -1.9410 4.9754 17 6 3.6677 -0.4894 6.4595 18 7 4.4917 0.4742 6.8089 19 14 2.2541 -0.9635 7.5847 20 1 1.4786 -2.0687 6.9666 21 1 2.7925 -1.4095 8.8949 22 1 1.3677 0.2106 7.7876 23 6 4.7080 0.4642 3.4841 24 6 3.2680 -0.1497 1.1972 25 1 2.7306 0.2586 -2.1291 26 1 5.1883 0.2577 -2.1254 27 1 5.8382 -2.3052 3.0010 28 1 4.0668 -1.9823 2.7484 29 1 6.2318 -0.1924 5.8498 30 1 4.3652 0.9390 7.6509 31 1 3.6470 0.6510 3.3183 32 1 5.2547 1.3551 3.7933 33 1 2.7319 -0.2669 2.1274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302775267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:12 Heat of formation + Delta-G solvation = 45.382340 kcal Electronic energy + Delta-G solvation = -22648.762396 eV Core-core repulsion = 19065.512402 eV Total energy + Delta-G solvation = -3583.249994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.17697 -41.90693 -39.87201 -37.76174 -37.40915 -36.24989 -34.14520 -33.41422 -32.23844 -29.15964 -27.94151 -27.07926 -26.31308 -24.25128 -23.30363 -20.68236 -20.36491 -20.18291 -19.50725 -18.91545 -18.40295 -17.31459 -17.17794 -16.81511 -16.03231 -15.88004 -15.73416 -15.31889 -15.18937 -14.96656 -14.24727 -14.04765 -13.85509 -13.72655 -13.41259 -13.28118 -12.95430 -12.87131 -12.60847 -12.49130 -12.27650 -12.15367 -12.08016 -12.01381 -11.30494 -10.69988 -10.67777 -10.40780 -10.08930 -9.75867 -8.27443 -6.45486 -1.46149 -0.26746 0.06868 0.50283 1.34786 1.39550 1.44985 1.50475 1.53791 2.34401 2.38352 2.40512 2.63311 2.96434 3.30298 3.57024 3.60979 3.69176 3.94552 4.15838 4.23601 4.33564 4.41612 4.47318 4.62802 4.78099 4.82990 5.04180 5.08260 5.13843 5.29600 5.43123 5.71487 5.94090 6.15041 6.16018 6.61304 6.68770 7.28712 7.51181 8.77849 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.006111 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.814101 B = 4580.542792 C = 6213.754558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.273 3.727 3 C 0.046 3.954 4 C -0.051 4.051 5 C -0.035 4.035 6 C -0.024 4.024 7 N 0.026 4.974 8 O -0.164 6.164 9 O -0.168 6.168 10 C 0.116 3.884 11 N -0.446 5.446 12 C 0.028 3.972 13 C 0.228 3.772 14 O -0.582 6.582 15 C -0.558 4.558 16 H 0.070 0.930 17 C 0.033 3.967 18 N -0.915 5.915 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.279 1.279 23 C -0.003 4.003 24 C -0.112 4.112 25 H 0.204 0.796 26 H 0.195 0.805 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.383 0.617 30 H 0.274 0.726 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 0.265 -15.683 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.043 4.043 3 C 0.042 3.958 4 C -0.072 4.072 5 C -0.054 4.054 6 C -0.109 4.109 7 N 0.543 4.457 8 O -0.380 6.380 9 O -0.381 6.381 10 C 0.019 3.981 11 N -0.167 5.167 12 C -0.097 4.097 13 C 0.187 3.813 14 O -0.392 6.392 15 C -0.596 4.596 16 H 0.088 0.912 17 C -0.168 4.168 18 N -0.555 5.555 19 Si 0.787 3.213 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.205 1.205 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.221 0.779 26 H 0.212 0.788 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.237 0.763 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.602 0.154 -16.180 17.123 hybrid contribution -0.462 0.196 1.842 1.909 sum -6.064 0.350 -14.337 15.571 Atomic orbital electron populations 1.81332 1.12755 1.08164 1.07762 1.25354 0.92132 0.93531 0.93247 1.16123 0.84267 1.00791 0.94636 1.21592 0.91714 0.95661 0.98224 1.21321 0.94450 0.93013 0.96650 1.21567 0.78756 1.13852 0.96727 1.43765 1.04156 0.97608 1.00158 1.94421 1.70014 1.52573 1.20978 1.94766 1.69049 1.53190 1.21053 1.19529 0.91314 0.94478 0.92751 1.66829 1.44071 1.07023 0.98761 1.24294 1.00491 0.91861 0.93087 1.20010 0.82776 0.90013 0.88550 1.86082 1.33846 1.75946 1.43344 1.21891 1.12411 1.20164 1.05144 0.91153 1.25735 0.98509 0.93839 0.98721 1.69508 1.38540 1.23422 1.24035 0.85457 0.79013 0.78291 0.78563 1.19073 1.20719 1.20491 1.24943 0.97337 0.99957 0.90812 1.21873 0.92525 0.99409 0.99705 0.77915 0.78766 0.90326 0.88827 0.76348 0.91627 0.89815 0.91954 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.42 18.54 19.00 0.35 -10.07 16 2 C 0.27 5.34 15.33 88.33 1.35 6.70 16 3 C 0.05 0.78 5.73 -21.38 -0.12 0.66 16 4 C -0.05 -0.54 9.75 22.56 0.22 -0.32 16 5 C -0.04 -0.52 9.53 22.21 0.21 -0.31 16 6 C -0.02 -0.63 6.87 36.56 0.25 -0.38 16 7 N 0.03 0.86 4.45 -46.03 -0.21 0.66 16 8 O -0.16 -4.97 18.43 18.88 0.35 -4.62 16 9 O -0.17 -6.85 17.08 18.88 0.32 -6.53 16 10 C 0.12 3.47 5.16 38.17 0.20 3.67 16 11 N -0.45 -17.29 4.13 -708.86 -2.93 -20.22 16 12 C 0.03 1.13 7.17 86.41 0.62 1.75 16 13 C 0.23 10.76 1.40 -10.90 -0.02 10.75 16 14 O -0.58 -30.90 13.48 -148.98 -2.01 -32.91 16 15 C -0.56 -27.44 8.61 25.60 0.22 -27.22 16 16 H 0.07 3.33 7.81 -2.91 -0.02 3.31 16 17 C 0.03 1.62 5.39 84.66 0.46 2.08 16 18 N -0.91 -47.02 11.19 21.45 0.24 -46.78 16 19 Si 0.96 39.56 29.54 68.60 2.03 41.59 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 23 C 0.00 -0.14 7.13 86.36 0.62 0.48 16 24 C -0.11 -2.70 7.58 22.68 0.17 -2.53 16 25 H 0.20 0.31 8.06 -2.91 -0.02 0.29 16 26 H 0.20 1.73 7.59 -2.91 -0.02 1.71 16 27 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.09 3.24 7.02 -2.39 -0.02 3.23 16 29 H 0.38 20.82 6.59 -74.05 -0.49 20.33 16 30 H 0.27 13.36 8.31 -92.70 -0.77 12.59 16 31 H 0.08 3.24 5.72 -2.39 -0.01 3.23 16 32 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.15 4.04 6.28 -2.91 -0.02 4.03 16 Total: -1.00 -63.28 301.48 3.04 -60.24 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.71 Total: 23.32 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.18 Total: -4.68 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.54 Total: -76.41 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.34 Total: -44.06 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -63.28 3.04 -60.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302775267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.625 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds