Wall clock time and date at job start Fri Apr 10 2020 14:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39730 * 120.20886 * 92.86158 * 3 2 1 5 5 C 1.37794 * 119.91895 * 180.02562 * 4 3 2 6 6 C 1.38573 * 120.34880 * 359.73137 * 5 4 3 7 7 C 1.38014 * 120.41529 * 0.54582 * 6 5 4 8 8 N 1.48015 * 119.96094 * 179.72240 * 7 6 5 9 9 O 1.21796 * 120.00294 * 320.76910 * 8 7 6 10 10 O 1.21801 * 119.99680 * 140.49179 * 8 7 6 11 11 C 1.38884 * 120.07445 * 359.45522 * 7 6 5 12 12 N 1.39027 * 120.17168 * 180.29520 * 11 7 6 13 13 C 1.47486 * 110.99914 * 211.99299 * 12 11 7 14 14 C 1.53518 * 87.93173 * 138.69945 * 13 12 11 15 15 O 1.42902 * 114.33876 * 87.63555 * 14 13 12 16 16 C 1.50695 * 114.16823 * 220.32403 * 14 13 12 17 17 H 1.08000 * 119.99660 * 93.84905 * 16 14 13 18 18 C 1.37878 * 120.00409 * 273.84585 * 16 14 13 19 19 N 1.31510 * 119.99778 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00036 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47498 * 59.99849 * 20 18 16 22 22 H 1.48503 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47059 * 299.99807 * 20 18 16 24 24 C 1.47484 * 110.99996 * 307.95915 * 12 11 7 25 25 H 1.07998 * 120.03841 * 0.02562 * 4 3 2 26 26 H 1.08010 * 119.82461 * 180.02562 * 5 4 3 27 27 H 1.08000 * 119.79086 * 180.29429 * 6 5 4 28 28 H 1.08993 * 113.47265 * 253.46544 * 13 12 11 29 29 H 1.09000 * 113.47369 * 23.93303 * 13 12 11 30 30 H 0.96699 * 114.00034 * 86.07399 * 15 14 13 31 31 H 0.96997 * 120.00004 * 179.97438 * 19 18 16 32 32 H 1.09002 * 113.47775 * 336.06675 * 24 12 11 33 33 H 1.09004 * 113.47291 * 106.53205 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.0612 -1.2060 5 6 4.6489 0.0610 -1.1991 6 6 5.3431 0.0065 -0.0010 7 6 4.6630 -0.0595 1.1981 8 7 5.4146 -0.1235 2.4717 9 8 6.4304 -0.7913 2.5464 10 8 5.0199 0.4957 3.4435 11 6 3.2742 -0.0602 1.2115 12 7 2.5871 -0.1204 2.4186 13 6 1.3107 -0.8432 2.2647 14 6 1.5978 -1.5236 3.6107 15 8 1.1346 -0.7951 4.7495 16 6 1.2362 -2.9859 3.6523 17 1 1.9840 -3.7335 3.4324 18 6 -0.0492 -3.3695 3.9712 19 7 -0.9596 -2.4592 4.2395 20 14 -0.4970 -5.1822 4.0235 21 1 0.3443 -5.8711 5.0349 22 1 -1.9289 -5.3280 4.3892 23 1 -0.2624 -5.7888 2.6885 24 6 3.0622 -1.2483 3.2415 25 1 2.7350 0.1082 -2.1425 26 1 5.1908 0.1083 -2.1322 27 1 6.4230 0.0116 -0.0058 28 1 0.4374 -0.1914 2.2853 29 1 1.3020 -1.5344 1.4219 30 1 0.2119 -0.9703 4.9797 31 1 -1.8639 -2.7290 4.4635 32 1 3.5208 -2.0477 2.6594 33 1 3.6732 -0.9398 4.0899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425244863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:46 Heat of formation + Delta-G solvation = 72.902636 kcal Electronic energy + Delta-G solvation = -23269.615353 eV Core-core repulsion = 19687.558728 eV Total energy + Delta-G solvation = -3582.056625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.26555 -40.80217 -38.55655 -36.47939 -36.22379 -34.75767 -32.27714 -32.21541 -31.36598 -27.81819 -26.49401 -25.82534 -24.88381 -23.23010 -21.82482 -19.95949 -19.33376 -18.45905 -17.82931 -17.49959 -17.11232 -16.49591 -15.94228 -15.33020 -15.16925 -14.93647 -14.31379 -13.71713 -13.49375 -13.13198 -12.94922 -12.92221 -12.66125 -12.21813 -12.07301 -11.93096 -11.60740 -11.31877 -11.18268 -11.06852 -10.84592 -10.78433 -10.50334 -10.31701 -10.15859 -9.66294 -9.48892 -8.84909 -8.46588 -8.17394 -6.46170 -4.58246 0.00532 0.53605 1.21820 1.55004 2.65847 2.73712 3.12052 3.18319 3.20224 3.53635 3.67132 3.91765 4.13083 4.27552 4.39412 4.66799 4.75045 4.83293 4.99401 5.23085 5.41601 5.49201 5.58023 5.72635 5.74497 5.82977 6.05116 6.26462 6.42268 6.56685 6.62343 6.96877 7.27026 7.55642 7.56325 7.69690 7.89309 8.44305 9.13270 9.43336 10.60626 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.006443 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.885044 B = 4344.477740 C = 5077.266305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.253 3.747 3 C -0.068 4.068 4 C -0.003 4.003 5 C -0.156 4.156 6 C -0.011 4.011 7 C -0.078 4.078 8 N 0.029 4.971 9 O -0.174 6.174 10 O -0.122 6.122 11 C 0.200 3.800 12 N -0.418 5.418 13 C -0.029 4.029 14 C 0.264 3.736 15 O -0.562 6.562 16 C -0.544 4.544 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.892 5.892 20 Si 0.910 3.090 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.274 1.274 24 C -0.002 4.002 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.395 0.605 31 H 0.276 0.724 32 H 0.076 0.924 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 3.529 -11.608 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.062 4.062 3 C -0.075 4.075 4 C -0.024 4.024 5 C -0.176 4.176 6 C -0.031 4.031 7 C -0.164 4.164 8 N 0.550 4.450 9 O -0.384 6.384 10 O -0.345 6.345 11 C 0.092 3.908 12 N -0.128 5.128 13 C -0.156 4.156 14 C 0.222 3.778 15 O -0.375 6.375 16 C -0.582 4.582 17 H 0.089 0.911 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.736 3.264 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.199 1.199 24 C -0.127 4.127 25 H 0.167 0.833 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.251 0.749 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.971 4.449 -11.833 14.945 hybrid contribution -0.163 -1.544 -0.089 1.555 sum 7.808 2.905 -11.922 14.545 Atomic orbital electron populations 1.81330 1.11319 1.07782 1.06363 1.24759 0.91976 0.94820 0.94608 1.15735 0.85732 1.13521 0.92503 1.21408 0.94308 0.89972 0.96693 1.20875 0.93400 1.05683 0.97633 1.20994 1.01495 0.91112 0.89464 1.20532 0.90290 1.20498 0.85087 1.43272 1.00405 0.99062 1.02219 1.94513 1.14147 1.39446 1.90312 1.94622 1.71009 1.41801 1.27094 1.19668 0.90064 0.88628 0.92435 1.65468 1.07003 1.33794 1.06561 1.25486 0.90066 0.95694 1.04332 1.19173 0.86484 0.89923 0.82230 1.86067 1.35811 1.68814 1.46828 1.21400 0.96474 0.90865 1.49429 0.91124 1.25081 0.95727 0.99087 0.92946 1.69254 1.04190 1.33775 1.45934 0.86354 0.77698 0.83404 0.78942 1.19569 1.20735 1.19891 1.24629 1.02901 0.87919 0.97229 0.83336 0.83019 0.83135 0.89165 0.90130 0.74860 0.91306 0.90553 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.47 17.38 41.84 0.73 -6.74 16 2 C 0.25 4.26 11.11 -22.47 -0.25 4.01 16 3 C -0.07 -0.96 5.47 -106.62 -0.58 -1.55 16 4 C 0.00 -0.03 9.75 -39.19 -0.38 -0.41 16 5 C -0.16 -1.20 10.02 -39.62 -0.40 -1.60 16 6 C -0.01 -0.11 9.66 -39.54 -0.38 -0.49 16 7 C -0.08 -1.17 6.09 -79.79 -0.49 -1.66 16 8 N 0.03 0.50 3.36 34.04 0.11 0.62 16 9 O -0.17 -2.95 18.98 -29.46 -0.56 -3.51 16 10 O -0.12 -2.38 15.66 -29.46 -0.46 -2.84 16 11 C 0.20 3.37 5.28 -83.56 -0.44 2.93 16 12 N -0.42 -8.67 5.83 -180.30 -1.05 -9.72 16 13 C -0.03 -0.67 4.51 -7.54 -0.03 -0.70 16 14 C 0.26 6.60 1.57 -91.24 -0.14 6.45 16 15 O -0.56 -15.06 13.54 -35.23 -0.48 -15.54 16 16 C -0.54 -14.17 8.68 -34.44 -0.30 -14.47 16 17 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 18 C 0.08 1.94 5.39 -17.82 -0.10 1.85 16 19 N -0.89 -23.56 11.02 55.43 0.61 -22.95 16 20 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C 0.00 -0.05 4.86 -7.55 -0.04 -0.08 16 25 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 26 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 27 H 0.15 1.20 8.03 -52.49 -0.42 0.78 16 28 H 0.09 2.20 7.02 -51.93 -0.36 1.84 16 29 H 0.08 1.79 6.05 -51.93 -0.31 1.48 16 30 H 0.39 10.70 6.33 45.56 0.29 10.99 16 31 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.08 1.59 7.72 -51.93 -0.40 1.19 16 33 H 0.11 2.40 6.29 -51.93 -0.33 2.07 16 LS Contribution 292.69 15.07 4.41 4.41 Total: -1.00 -29.67 292.69 -7.16 -36.84 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -1.93 Total: 10.12 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.53 Total: -5.72 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.40 Total: -38.79 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.50 Total: -21.88 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.67 -7.16 -36.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425244863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.740 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds