Wall clock time and date at job start Fri Apr 10 2020 14:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39730 * 120.20886 * 92.86158 * 3 2 1 5 5 C 1.37794 * 119.91895 * 180.02562 * 4 3 2 6 6 C 1.38573 * 120.34880 * 359.73137 * 5 4 3 7 7 C 1.38014 * 120.41529 * 0.54582 * 6 5 4 8 8 N 1.48015 * 119.96094 * 179.72240 * 7 6 5 9 9 O 1.21796 * 120.00294 * 320.76910 * 8 7 6 10 10 O 1.21801 * 119.99680 * 140.49179 * 8 7 6 11 11 C 1.38884 * 120.07445 * 359.45522 * 7 6 5 12 12 N 1.39027 * 120.17168 * 180.29520 * 11 7 6 13 13 C 1.47486 * 110.99914 * 211.99299 * 12 11 7 14 14 C 1.53518 * 87.93173 * 138.69945 * 13 12 11 15 15 O 1.42902 * 114.33876 * 87.63555 * 14 13 12 16 16 C 1.50695 * 114.16823 * 220.32403 * 14 13 12 17 17 H 1.08000 * 119.99660 * 93.84905 * 16 14 13 18 18 C 1.37878 * 120.00409 * 273.84585 * 16 14 13 19 19 N 1.31510 * 119.99778 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00036 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47498 * 59.99849 * 20 18 16 22 22 H 1.48503 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47059 * 299.99807 * 20 18 16 24 24 C 1.47484 * 110.99996 * 307.95915 * 12 11 7 25 25 H 1.07998 * 120.03841 * 0.02562 * 4 3 2 26 26 H 1.08010 * 119.82461 * 180.02562 * 5 4 3 27 27 H 1.08000 * 119.79086 * 180.29429 * 6 5 4 28 28 H 1.08993 * 113.47265 * 253.46544 * 13 12 11 29 29 H 1.09000 * 113.47369 * 23.93303 * 13 12 11 30 30 H 0.96699 * 114.00034 * 86.07399 * 15 14 13 31 31 H 0.96997 * 120.00004 * 179.97438 * 19 18 16 32 32 H 1.09002 * 113.47775 * 336.06675 * 24 12 11 33 33 H 1.09004 * 113.47291 * 106.53205 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.0612 -1.2060 5 6 4.6489 0.0610 -1.1991 6 6 5.3431 0.0065 -0.0010 7 6 4.6630 -0.0595 1.1981 8 7 5.4146 -0.1235 2.4717 9 8 6.4304 -0.7913 2.5464 10 8 5.0199 0.4957 3.4435 11 6 3.2742 -0.0602 1.2115 12 7 2.5871 -0.1204 2.4186 13 6 1.3107 -0.8432 2.2647 14 6 1.5978 -1.5236 3.6107 15 8 1.1346 -0.7951 4.7495 16 6 1.2362 -2.9859 3.6523 17 1 1.9840 -3.7335 3.4324 18 6 -0.0492 -3.3695 3.9712 19 7 -0.9596 -2.4592 4.2395 20 14 -0.4970 -5.1822 4.0235 21 1 0.3443 -5.8711 5.0349 22 1 -1.9289 -5.3280 4.3892 23 1 -0.2624 -5.7888 2.6885 24 6 3.0622 -1.2483 3.2415 25 1 2.7350 0.1082 -2.1425 26 1 5.1908 0.1083 -2.1322 27 1 6.4230 0.0116 -0.0058 28 1 0.4374 -0.1914 2.2853 29 1 1.3020 -1.5344 1.4219 30 1 0.2119 -0.9703 4.9797 31 1 -1.8639 -2.7290 4.4635 32 1 3.5208 -2.0477 2.6594 33 1 3.6732 -0.9398 4.0899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425244863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:45 Heat of formation + Delta-G solvation = 50.563633 kcal Electronic energy + Delta-G solvation = -23270.584044 eV Core-core repulsion = 19687.558728 eV Total energy + Delta-G solvation = -3583.025316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.57142 -42.23062 -39.82046 -37.82438 -37.56943 -36.55964 -34.28710 -33.28913 -32.66067 -29.42328 -27.84701 -27.44870 -26.44436 -24.52853 -23.01531 -21.23656 -21.06956 -19.80822 -19.52890 -18.78346 -18.32331 -17.89930 -17.45170 -16.88657 -16.72646 -16.15020 -15.86634 -15.30869 -14.78086 -14.62026 -14.50144 -14.29899 -13.87891 -13.57899 -13.55227 -13.47558 -13.05750 -12.86044 -12.79511 -12.67487 -12.44379 -12.35894 -12.12506 -12.04632 -11.62098 -11.17549 -10.81409 -10.66466 -10.33900 -9.55594 -8.41649 -6.62056 -1.09086 -0.58008 0.07494 0.36998 1.36150 1.38357 1.43801 1.47169 1.62250 2.25700 2.35124 2.51977 2.59328 2.80320 3.12645 3.38055 3.58480 3.63788 3.86780 3.87135 3.94837 4.01373 4.23345 4.41953 4.51354 4.73073 4.80278 4.92055 4.94822 5.03051 5.19487 5.39658 5.55234 5.71134 5.74901 6.28144 6.43535 6.51437 7.12242 7.32953 8.64484 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.006443 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.885044 B = 4344.477740 C = 5077.266305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.269 3.731 3 C -0.084 4.084 4 C 0.022 3.978 5 C -0.114 4.114 6 C 0.001 3.999 7 C -0.092 4.092 8 N 0.031 4.969 9 O -0.142 6.142 10 O -0.198 6.198 11 C 0.162 3.838 12 N -0.432 5.432 13 C -0.005 4.005 14 C 0.233 3.767 15 O -0.578 6.578 16 C -0.566 4.566 17 H 0.072 0.928 18 C 0.030 3.970 19 N -0.916 5.916 20 Si 0.974 3.026 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.266 1.266 24 C 0.016 3.984 25 H 0.193 0.807 26 H 0.215 0.785 27 H 0.185 0.815 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.388 0.612 31 H 0.278 0.722 32 H 0.082 0.918 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.172 2.753 -15.621 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.045 4.045 3 C -0.091 4.091 4 C 0.002 3.998 5 C -0.133 4.133 6 C -0.018 4.018 7 C -0.177 4.177 8 N 0.549 4.451 9 O -0.365 6.365 10 O -0.404 6.404 11 C 0.056 3.944 12 N -0.143 5.143 13 C -0.132 4.132 14 C 0.191 3.809 15 O -0.390 6.390 16 C -0.603 4.603 17 H 0.090 0.910 18 C -0.171 4.171 19 N -0.556 5.556 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.110 4.110 25 H 0.210 0.790 26 H 0.231 0.769 27 H 0.202 0.798 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.243 0.757 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.377 3.784 -15.797 19.276 hybrid contribution -0.698 -1.320 0.904 1.745 sum 9.679 2.464 -14.893 17.932 Atomic orbital electron populations 1.81329 1.12974 1.09867 1.07892 1.25294 0.92664 0.93334 0.93201 1.15999 0.84302 1.15183 0.93570 1.22017 0.95251 0.86531 0.96039 1.21637 0.92488 1.00487 0.98659 1.21626 1.03262 0.88818 0.88130 1.20810 0.89542 1.22335 0.85050 1.43661 1.00279 0.98276 1.02933 1.94453 1.14045 1.37663 1.90366 1.94652 1.72349 1.44529 1.28866 1.19723 0.91047 0.91942 0.91656 1.65417 1.05901 1.33881 1.09121 1.24976 0.90452 0.95020 1.02778 1.19565 0.88809 0.89865 0.82624 1.86046 1.35356 1.69433 1.48212 1.21677 0.96978 0.91585 1.50071 0.91004 1.25899 0.95512 1.03259 0.92434 1.69346 1.04427 1.35524 1.46342 0.85363 0.77448 0.78313 0.79170 1.19135 1.20294 1.19084 1.24303 1.00487 0.88893 0.97281 0.79020 0.76853 0.79825 0.92012 0.90241 0.75657 0.91175 0.90004 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -17.39 17.38 19.00 0.33 -17.06 16 2 C 0.27 9.02 11.11 88.33 0.98 10.00 16 3 C -0.08 -2.20 5.47 -21.16 -0.12 -2.31 16 4 C 0.02 0.28 9.75 22.53 0.22 0.50 16 5 C -0.11 -0.85 10.02 22.24 0.22 -0.63 16 6 C 0.00 0.02 9.66 22.30 0.22 0.24 16 7 C -0.09 -2.55 6.09 36.48 0.22 -2.33 16 8 N 0.03 1.07 3.36 -46.22 -0.16 0.91 16 9 O -0.14 -4.58 18.98 18.89 0.36 -4.22 16 10 O -0.20 -8.12 15.66 18.89 0.30 -7.83 16 11 C 0.16 5.36 5.28 38.67 0.20 5.57 16 12 N -0.43 -18.70 5.83 -724.74 -4.22 -22.93 16 13 C 0.00 -0.24 4.51 83.58 0.38 0.14 16 14 C 0.23 12.29 1.57 -11.20 -0.02 12.28 16 15 O -0.58 -33.19 13.54 -148.98 -2.02 -35.20 16 16 C -0.57 -30.55 8.68 25.60 0.22 -30.33 16 17 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 18 C 0.03 1.58 5.39 84.66 0.46 2.04 16 19 N -0.92 -50.37 11.02 21.45 0.24 -50.13 16 20 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 C 0.02 0.73 4.86 83.57 0.41 1.14 16 25 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 26 H 0.21 -0.71 8.06 -2.91 -0.02 -0.73 16 27 H 0.18 1.63 8.03 -2.91 -0.02 1.60 16 28 H 0.06 3.24 7.02 -2.39 -0.02 3.22 16 29 H 0.08 3.69 6.05 -2.39 -0.01 3.67 16 30 H 0.39 22.60 6.33 -74.06 -0.47 22.13 16 31 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.08 3.53 7.72 -2.39 -0.02 3.51 16 33 H 0.09 4.38 6.29 -2.38 -0.02 4.37 16 Total: -1.00 -73.07 292.69 0.97 -72.10 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.72 Total: 24.47 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 3.39 Total: -3.72 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -3.81 Total: -89.21 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.36 Total: -47.26 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -73.07 0.97 -72.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425244863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.659 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds