Wall clock time and date at job start Fri Apr 10 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00280 * 2 1 4 4 H 1.48504 * 109.46808 * 269.99690 * 3 2 1 5 5 H 1.48499 * 109.47231 * 29.99463 * 3 2 1 6 6 H 1.48498 * 109.47282 * 149.99854 * 3 2 1 7 7 C 1.38952 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99769 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00155 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00132 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00245 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99831 * 179.97438 * 10 9 7 13 13 O 1.45210 * 109.46946 * 179.97438 * 12 10 9 14 14 C 1.34775 * 116.99711 * 179.97438 * 13 12 10 15 15 O 1.21534 * 120.00466 * 0.02562 * 14 13 12 16 16 C 1.47251 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.31627 * 126.82569 * 0.02562 * 16 14 13 18 18 N 1.28382 * 111.95218 * 180.02562 * 17 16 14 19 19 H 0.97006 * 124.36701 * 179.97438 * 18 17 16 20 20 C 1.37053 * 111.26997 * 359.97438 * 18 17 16 21 21 C 1.39127 * 134.72271 * 180.02562 * 20 18 17 22 22 C 1.36682 * 119.78420 * 179.97438 * 21 20 18 23 23 C 1.38887 * 120.89908 * 359.97438 * 22 21 20 24 24 C 1.36731 * 120.51785 * 0.02562 * 23 22 21 25 25 C 1.39176 * 119.51100 * 0.27759 * 24 23 22 26 26 H 0.97006 * 119.99711 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99831 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47239 * 60.00574 * 12 10 9 29 29 H 1.09001 * 109.47269 * 299.99855 * 12 10 9 30 30 H 1.08003 * 120.10106 * 0.02562 * 21 20 18 31 31 H 1.08008 * 119.54801 * 179.97438 * 22 21 20 32 32 H 1.07997 * 119.74493 * 179.97438 * 23 22 21 33 33 H 1.08002 * 120.24124 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0001 12 6 5.5607 -2.3707 0.0011 13 8 6.0446 -3.7398 0.0017 14 6 7.3808 -3.9163 0.0012 15 8 8.1212 -2.9526 0.0008 16 6 7.9436 -5.2770 0.0012 17 7 7.2715 -6.4088 0.0012 18 7 8.0502 -7.4294 0.0017 19 1 7.7458 -8.3505 0.0021 20 6 9.3672 -7.0500 0.0016 21 6 10.5816 -7.7288 0.0016 22 6 11.7531 -7.0246 0.0010 23 6 11.7503 -5.6357 -0.0001 24 6 10.5710 -4.9437 -0.0001 25 6 9.3668 -5.6414 0.0069 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3635 0.0007 28 1 5.9240 -1.8570 0.8911 29 1 5.9240 -1.8569 -0.8889 30 1 10.5985 -8.8087 0.0013 31 1 12.6937 -7.5555 0.0014 32 1 12.6869 -5.0981 -0.0002 33 1 10.5741 -3.8637 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731234958.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:17 Heat of formation + Delta-G solvation = -20.105185 kcal Electronic energy + Delta-G solvation = -21231.631224 eV Core-core repulsion = 17645.541477 eV Total energy + Delta-G solvation = -3586.089746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.78451 -40.11181 -38.25277 -38.09287 -36.13695 -34.01729 -32.91488 -31.75870 -30.56395 -30.33817 -28.59886 -25.19471 -24.05345 -23.47919 -22.67191 -20.46661 -19.59907 -18.59580 -18.47470 -18.05379 -16.80527 -16.57716 -16.36496 -15.70755 -15.61591 -15.49772 -14.88870 -14.45126 -14.11924 -14.05364 -13.63104 -12.91292 -12.57114 -12.42443 -12.37299 -12.24240 -12.15677 -11.57203 -11.23398 -11.22667 -10.70148 -10.61598 -10.50923 -10.49796 -10.01367 -9.63496 -9.13726 -8.61715 -8.47796 -8.25190 -6.35416 -3.88107 0.47451 0.98653 1.52005 2.21762 2.65273 2.93161 3.02121 3.06545 3.14924 3.44205 3.60671 4.02726 4.07621 4.11239 4.36859 4.62522 4.66638 4.89841 5.04685 5.14393 5.14953 5.28921 5.42944 5.58614 5.61437 5.71981 5.82538 6.05297 6.16150 6.40388 6.45552 6.65687 7.41160 7.49985 7.82309 8.05065 8.52235 8.87941 9.33994 9.70418 10.76973 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.040743 B = 0.002973 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.067466 B = 9415.446401 C =10087.368496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.449 3.551 11 O -0.553 6.553 12 C 0.057 3.943 13 O -0.308 6.308 14 C 0.555 3.445 15 O -0.502 6.502 16 C 0.015 3.985 17 N -0.163 5.163 18 N -0.408 5.408 19 H 0.451 0.549 20 C 0.062 3.938 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.137 4.137 24 C -0.046 4.046 25 C -0.104 4.104 26 H 0.275 0.725 27 H 0.373 0.627 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.947 -11.787 -0.015 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.140 0.860 9 N -0.221 5.221 10 C 0.234 3.766 11 O -0.435 6.435 12 C -0.020 4.020 13 O -0.221 6.221 14 C 0.397 3.603 15 O -0.388 6.388 16 C -0.153 4.153 17 N 0.006 4.994 18 N -0.129 5.129 19 H 0.296 0.704 20 C -0.051 4.051 21 C -0.138 4.138 22 C -0.105 4.105 23 C -0.156 4.156 24 C -0.066 4.066 25 C -0.111 4.111 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 23.401 -12.445 -0.015 26.505 hybrid contribution 1.121 1.254 0.019 1.682 sum 24.522 -11.191 0.004 26.955 Atomic orbital electron populations 1.69620 1.05654 1.27696 1.48605 1.25036 0.95520 0.98052 0.97343 0.86673 0.79877 0.83852 0.79072 1.19425 1.20011 1.19299 1.19425 0.78685 0.96869 1.48526 0.86026 1.42018 1.07605 1.05663 1.66805 1.19171 0.86879 0.85162 0.85431 1.90621 1.68975 1.30684 1.53179 1.22836 0.95275 0.80069 1.03852 1.86706 1.21526 1.31233 1.82656 1.19317 0.81314 0.86604 0.73095 1.90845 1.60874 1.40552 1.46559 1.21457 0.89731 0.90262 1.13862 1.73239 1.22238 0.94278 1.09690 1.43242 1.01924 1.08630 1.59145 0.70364 1.19240 0.86943 0.94015 1.04896 1.19805 0.88811 0.99802 1.05355 1.20767 0.97438 0.94314 0.98030 1.20870 0.98052 0.94175 1.02546 1.20426 0.89581 1.00940 0.95658 1.19325 0.92307 0.92071 1.07354 0.91439 0.79380 0.89108 0.89087 0.85177 0.84982 0.85063 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.96 55.50 0.77 -24.66 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 8 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 9 N -0.58 -13.98 5.09 -10.96 -0.06 -14.04 16 10 C 0.45 10.65 7.86 -10.98 -0.09 10.56 16 11 O -0.55 -15.64 16.08 -14.11 -0.23 -15.87 16 12 C 0.06 1.06 5.96 36.01 0.21 1.28 16 13 O -0.31 -6.00 9.77 -47.38 -0.46 -6.46 16 14 C 0.55 9.50 7.95 34.39 0.27 9.77 16 15 O -0.50 -8.64 16.19 -19.29 -0.31 -8.95 16 16 C 0.02 0.23 7.36 -80.78 -0.59 -0.36 16 17 N -0.16 -2.34 12.11 34.45 0.42 -1.92 16 18 N -0.41 -4.11 6.85 32.34 0.22 -3.89 16 19 H 0.45 2.67 8.96 -190.49 -1.71 0.96 16 20 C 0.06 0.62 7.38 -84.21 -0.62 0.00 16 21 C -0.12 -0.83 10.03 -39.81 -0.40 -1.23 16 22 C -0.08 -0.55 9.96 -39.90 -0.40 -0.95 16 23 C -0.14 -1.05 9.98 -39.89 -0.40 -1.45 16 24 C -0.05 -0.48 9.87 -39.78 -0.39 -0.88 16 25 C -0.10 -1.31 6.34 -105.04 -0.67 -1.97 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 31 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.14 1.47 7.65 -52.49 -0.40 1.07 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -35.87 305.37 -7.09 -42.96 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.01 Total: 6.69 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.32 Total: 7.03 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 1.36 Total: -44.51 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.00 Total: -31.28 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.87 -7.09 -42.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234958.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.856 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds