Wall clock time and date at job start Fri Apr 10 2020 14:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00280 * 2 1 4 4 H 1.48504 * 109.46808 * 269.99690 * 3 2 1 5 5 H 1.48499 * 109.47231 * 29.99463 * 3 2 1 6 6 H 1.48498 * 109.47282 * 149.99854 * 3 2 1 7 7 C 1.38952 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99769 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00155 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00132 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00245 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99831 * 179.97438 * 10 9 7 13 13 O 1.45210 * 109.46946 * 179.97438 * 12 10 9 14 14 C 1.34775 * 116.99711 * 179.97438 * 13 12 10 15 15 O 1.21534 * 120.00466 * 0.02562 * 14 13 12 16 16 C 1.47251 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.31627 * 126.82569 * 0.02562 * 16 14 13 18 18 N 1.28382 * 111.95218 * 180.02562 * 17 16 14 19 19 H 0.97006 * 124.36701 * 179.97438 * 18 17 16 20 20 C 1.37053 * 111.26997 * 359.97438 * 18 17 16 21 21 C 1.39127 * 134.72271 * 180.02562 * 20 18 17 22 22 C 1.36682 * 119.78420 * 179.97438 * 21 20 18 23 23 C 1.38887 * 120.89908 * 359.97438 * 22 21 20 24 24 C 1.36731 * 120.51785 * 0.02562 * 23 22 21 25 25 C 1.39176 * 119.51100 * 0.27759 * 24 23 22 26 26 H 0.97006 * 119.99711 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99831 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47239 * 60.00574 * 12 10 9 29 29 H 1.09001 * 109.47269 * 299.99855 * 12 10 9 30 30 H 1.08003 * 120.10106 * 0.02562 * 21 20 18 31 31 H 1.08008 * 119.54801 * 179.97438 * 22 21 20 32 32 H 1.07997 * 119.74493 * 179.97438 * 23 22 21 33 33 H 1.08002 * 120.24124 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0001 12 6 5.5607 -2.3707 0.0011 13 8 6.0446 -3.7398 0.0017 14 6 7.3808 -3.9163 0.0012 15 8 8.1212 -2.9526 0.0008 16 6 7.9436 -5.2770 0.0012 17 7 7.2715 -6.4088 0.0012 18 7 8.0502 -7.4294 0.0017 19 1 7.7458 -8.3505 0.0021 20 6 9.3672 -7.0500 0.0016 21 6 10.5816 -7.7288 0.0016 22 6 11.7531 -7.0246 0.0010 23 6 11.7503 -5.6357 -0.0001 24 6 10.5710 -4.9437 -0.0001 25 6 9.3668 -5.6414 0.0069 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3635 0.0007 28 1 5.9240 -1.8570 0.8911 29 1 5.9240 -1.8569 -0.8889 30 1 10.5985 -8.8087 0.0013 31 1 12.6937 -7.5555 0.0014 32 1 12.6869 -5.0981 -0.0002 33 1 10.5741 -3.8637 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731234958.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:16 Heat of formation + Delta-G solvation = -46.628960 kcal Electronic energy + Delta-G solvation = -21232.781381 eV Core-core repulsion = 17645.541477 eV Total energy + Delta-G solvation = -3587.239904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.63909 -41.50693 -40.14368 -38.77032 -37.55153 -36.09781 -33.89137 -33.75468 -31.30160 -31.16014 -30.14183 -26.83060 -25.50468 -24.25406 -23.39486 -21.64000 -21.56024 -20.53579 -19.35036 -19.09709 -17.94406 -17.88881 -17.72484 -17.21962 -16.74597 -16.68497 -16.19495 -15.70457 -15.48951 -15.10544 -14.82973 -14.67907 -14.23021 -14.03851 -13.78839 -13.22545 -13.00586 -12.92480 -12.46372 -12.30678 -12.21902 -12.00138 -11.92369 -11.81400 -11.59547 -11.34955 -10.62778 -10.34918 -9.85921 -9.20500 -8.46468 -6.09905 -0.40590 0.26842 0.64321 1.08377 1.30848 1.33921 1.44948 1.73871 1.74943 1.83461 2.20524 2.72188 2.76163 3.07661 3.17674 3.36299 3.64072 3.85071 4.05730 4.09556 4.12448 4.18858 4.39620 4.43111 4.69928 4.99581 5.06464 5.17551 5.43876 5.46626 5.54752 5.78448 5.84178 6.02129 6.36443 6.49808 6.68341 6.76484 7.24479 7.76956 8.70258 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.040743 B = 0.002973 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.067466 B = 9415.446401 C =10087.368496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.963 3.037 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.230 1.230 7 C -0.334 4.334 8 H 0.059 0.941 9 N -0.574 5.574 10 C 0.448 3.552 11 O -0.609 6.609 12 C 0.066 3.934 13 O -0.335 6.335 14 C 0.556 3.444 15 O -0.509 6.509 16 C -0.024 4.024 17 N -0.191 5.191 18 N -0.386 5.386 19 H 0.466 0.534 20 C 0.053 3.947 21 C -0.107 4.107 22 C -0.079 4.079 23 C -0.122 4.122 24 C -0.077 4.077 25 C -0.126 4.126 26 H 0.283 0.717 27 H 0.394 0.606 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.436 -11.543 0.019 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.782 3.218 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.154 1.154 7 C -0.463 4.463 8 H 0.077 0.923 9 N -0.216 5.216 10 C 0.235 3.765 11 O -0.493 6.493 12 C -0.011 4.011 13 O -0.250 6.250 14 C 0.399 3.601 15 O -0.396 6.396 16 C -0.190 4.190 17 N -0.025 5.025 18 N -0.111 5.111 19 H 0.316 0.684 20 C -0.060 4.060 21 C -0.128 4.128 22 C -0.099 4.099 23 C -0.140 4.140 24 C -0.097 4.097 25 C -0.133 4.133 26 H 0.092 0.908 27 H 0.230 0.770 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.185 0.815 31 H 0.191 0.809 32 H 0.177 0.823 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 27.922 -12.202 0.021 30.472 hybrid contribution -0.207 0.952 0.005 0.975 sum 27.715 -11.250 0.025 29.911 Atomic orbital electron populations 1.69788 1.08114 1.29602 1.49027 1.26119 0.96495 1.02715 0.95485 0.85394 0.79596 0.76551 0.80237 1.17831 1.19598 1.15355 1.19002 0.80720 0.95349 1.51223 0.92289 1.41774 1.06096 1.06905 1.66821 1.20144 0.89251 0.84082 0.83015 1.90593 1.70926 1.32724 1.55088 1.22732 0.90792 0.80706 1.06825 1.86692 1.23301 1.31590 1.83377 1.19597 0.80211 0.87660 0.72617 1.90809 1.60569 1.40981 1.47223 1.21394 0.91301 0.89510 1.16804 1.73118 1.23737 0.95142 1.10500 1.43262 1.02018 1.08619 1.57179 0.68427 1.19575 0.87553 0.93309 1.05524 1.20326 0.87459 1.01721 1.03264 1.21293 0.98850 0.93847 0.95933 1.21283 0.97915 0.95144 0.99695 1.20515 0.90171 1.00807 0.98237 1.19553 0.91570 0.93574 1.08572 0.90780 0.76956 0.86023 0.85915 0.81505 0.80933 0.82299 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.96 21.66 0.30 -55.24 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 7 C -0.33 -19.81 10.16 84.04 0.85 -18.95 16 8 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 9 N -0.57 -27.85 5.09 -306.98 -1.56 -29.41 16 10 C 0.45 21.79 7.86 87.66 0.69 22.48 16 11 O -0.61 -36.44 16.08 15.73 0.25 -36.18 16 12 C 0.07 2.41 5.96 71.24 0.42 2.84 16 13 O -0.34 -13.39 9.77 -50.47 -0.49 -13.88 16 14 C 0.56 19.50 7.95 70.19 0.56 20.06 16 15 O -0.51 -17.56 16.19 19.72 0.32 -17.24 16 16 C -0.02 -0.76 7.36 43.82 0.32 -0.44 16 17 N -0.19 -5.64 12.11 -44.94 -0.54 -6.18 16 18 N -0.39 -7.51 6.85 -51.59 -0.35 -7.86 16 19 H 0.47 4.98 8.96 -220.03 -1.97 3.01 16 20 C 0.05 0.98 7.38 39.18 0.29 1.27 16 21 C -0.11 -1.09 10.03 22.12 0.22 -0.87 16 22 C -0.08 -0.65 9.96 22.06 0.22 -0.43 16 23 C -0.12 -1.47 9.98 22.07 0.22 -1.25 16 24 C -0.08 -1.56 9.87 22.14 0.22 -1.34 16 25 C -0.13 -3.14 6.34 -20.14 -0.13 -3.26 16 26 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 27 H 0.39 15.59 5.76 -92.71 -0.53 15.06 16 28 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 29 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 31 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 32 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 33 H 0.13 2.75 7.65 -2.91 -0.02 2.73 16 Total: -1.00 -85.93 305.37 2.81 -83.11 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -1.37 Total: 22.36 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 4.36 Total: 20.11 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -2.16 Total: -98.69 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: 0.08 Total: -67.31 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -85.93 2.81 -83.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234958.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.483 kcal (2) G-P(sol) polarization free energy of solvation -85.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds