Wall clock time and date at job start Fri Apr 10 2020 14:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86796 * 120.00180 * 2 1 4 4 H 1.48502 * 109.47248 * 240.00475 * 3 2 1 5 5 H 1.48507 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47133 * 120.00085 * 3 2 1 7 7 C 1.39022 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00019 * 177.36456 * 7 2 1 9 9 N 1.36882 * 120.00208 * 357.09421 * 7 2 1 10 10 C 1.46497 * 119.99711 * 337.75603 * 9 7 2 11 11 C 1.50695 * 109.47155 * 97.35714 * 10 9 7 12 12 O 1.20826 * 120.00065 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00118 * 180.02562 * 11 10 9 14 14 C 1.34775 * 119.99846 * 157.75913 * 9 7 2 15 15 O 1.21652 * 120.00644 * 356.15320 * 14 9 7 16 16 C 1.47270 * 119.99762 * 176.15139 * 14 9 7 17 17 N 1.31643 * 126.82742 * 7.03461 * 16 14 9 18 18 N 1.28386 * 111.95184 * 179.97438 * 17 16 14 19 19 H 0.96998 * 124.36615 * 180.02562 * 18 17 16 20 20 C 1.37058 * 111.26808 * 359.97438 * 18 17 16 21 21 C 1.39124 * 134.71665 * 180.02562 * 20 18 17 22 22 C 1.36696 * 119.77974 * 179.28688 * 21 20 18 23 23 C 1.38883 * 120.89599 * 0.57146 * 22 21 20 24 24 C 1.36731 * 120.52124 * 359.63651 * 23 22 21 25 25 C 1.39178 * 119.51188 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99929 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47198 * 217.35379 * 10 9 7 28 28 H 1.08997 * 109.47409 * 337.35327 * 10 9 7 29 29 H 0.96703 * 117.00211 * 180.02562 * 13 11 10 30 30 H 1.08001 * 120.10556 * 359.95550 * 21 20 18 31 31 H 1.08007 * 119.54700 * 180.18586 * 22 21 20 32 32 H 1.07995 * 119.74271 * 179.61524 * 23 22 21 33 33 H 1.07999 * 120.25003 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1015 1.6964 -1.2126 5 1 1.2828 2.7465 0.0006 6 1 3.1016 1.6963 1.2125 7 6 2.0088 -1.2040 -0.0005 8 1 3.0880 -1.2045 -0.0435 9 7 1.3257 -2.3887 0.0590 10 6 -0.0350 -2.4231 0.6006 11 6 -1.0278 -2.3798 -0.5323 12 8 -0.6386 -2.3254 -1.6749 13 8 -2.3444 -2.4008 -0.2721 14 6 1.9051 -3.5234 -0.3805 15 8 3.0071 -3.4844 -0.8943 16 6 1.2040 -4.8108 -0.2388 17 7 -0.0327 -4.9946 0.1733 18 7 -0.3542 -6.2375 0.1871 19 1 -1.2216 -6.5757 0.4594 20 6 0.6858 -7.0248 -0.2337 21 6 0.8708 -8.3930 -0.4052 22 6 2.0669 -8.8633 -0.8706 23 6 3.1091 -7.9939 -1.1652 24 6 2.9555 -6.6451 -1.0017 25 6 1.7431 -6.1445 -0.5366 26 1 -0.4850 0.8401 0.0004 27 1 -0.1756 -3.3407 1.1720 28 1 -0.1889 -1.5625 1.2516 29 1 -2.9426 -2.3717 -1.0314 30 1 0.0683 -9.0803 -0.1816 31 1 2.2054 -9.9260 -1.0052 32 1 4.0484 -8.3862 -1.5260 33 1 3.7690 -5.9731 -1.2318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:14 Heat of formation + Delta-G solvation = -11.381874 kcal Electronic energy + Delta-G solvation = -23131.697416 eV Core-core repulsion = 19545.985941 eV Total energy + Delta-G solvation = -3585.711475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05426 -39.22909 -37.91587 -37.45758 -35.16507 -34.45005 -32.31153 -31.59895 -29.91043 -29.50195 -27.59635 -25.37512 -23.24080 -22.57235 -22.02773 -20.94705 -18.99795 -17.73307 -17.29557 -17.06272 -16.72344 -15.79696 -15.67343 -15.11815 -15.03457 -14.71713 -14.35623 -14.00787 -13.82993 -13.51433 -13.14462 -12.68831 -12.01001 -11.90291 -11.84919 -11.76955 -11.34350 -11.03949 -10.85121 -10.57084 -10.42979 -10.37265 -10.08103 -9.73725 -9.57543 -9.02849 -8.76746 -8.52866 -7.94431 -7.78004 -6.46009 -3.99916 1.13951 1.61058 2.42237 3.05696 3.19037 3.22750 3.26428 3.65581 3.85696 3.96009 4.17365 4.44728 4.55901 4.73395 4.96138 5.11721 5.14608 5.19405 5.45570 5.59414 5.80489 5.96501 6.16856 6.28785 6.46465 6.62091 6.69379 6.77453 6.82528 7.03464 7.32733 7.44171 7.61389 7.95635 8.21625 8.37313 9.00359 9.12612 9.26410 9.78888 10.57240 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.005775 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.363593 B = 4847.059991 C = 5788.237143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.031 3.969 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.292 4.292 8 H 0.109 0.891 9 N -0.408 5.408 10 C 0.136 3.864 11 C 0.509 3.491 12 O -0.521 6.521 13 O -0.532 6.532 14 C 0.528 3.472 15 O -0.568 6.568 16 C 0.048 3.952 17 N -0.234 5.234 18 N -0.432 5.432 19 H 0.440 0.560 20 C 0.067 3.933 21 C -0.130 4.130 22 C -0.087 4.087 23 C -0.156 4.156 24 C -0.032 4.032 25 C -0.115 4.115 26 H 0.274 0.726 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.387 0.613 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -12.646 2.876 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.172 4.172 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.420 4.420 8 H 0.127 0.873 9 N -0.126 5.126 10 C 0.010 3.990 11 C 0.350 3.650 12 O -0.407 6.407 13 O -0.342 6.342 14 C 0.316 3.684 15 O -0.450 6.450 16 C -0.123 4.123 17 N -0.062 5.062 18 N -0.148 5.148 19 H 0.284 0.716 20 C -0.047 4.047 21 C -0.152 4.152 22 C -0.107 4.107 23 C -0.176 4.176 24 C -0.052 4.052 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.157 0.843 29 H 0.243 0.757 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.311 -11.853 3.023 12.673 hybrid contribution -0.288 0.267 -0.775 0.869 sum -3.599 -11.586 2.248 12.339 Atomic orbital electron populations 1.69677 1.06189 1.28287 1.48483 1.25417 0.95701 1.00240 0.95841 0.85740 0.78716 0.79507 0.79233 1.19593 1.20824 1.19619 1.19784 0.92996 0.81315 1.47877 0.87308 1.43228 1.11426 1.06690 1.51225 1.21088 0.80224 1.04770 0.92912 1.23577 0.80746 0.69478 0.91173 1.90592 1.79549 1.46467 1.24126 1.84522 1.19444 1.87039 1.43192 1.16526 0.86932 0.81393 0.83560 1.90630 1.21108 1.85560 1.47741 1.23451 0.90242 0.94865 1.03768 1.73258 1.16308 0.99476 1.17196 1.43109 1.13799 1.02279 1.55651 0.71612 1.19247 0.89622 0.93816 1.02037 1.19677 0.99042 0.90638 1.05854 1.20641 0.92559 0.99593 0.97942 1.20751 0.99520 0.92977 1.04333 1.20468 0.95654 0.95181 0.93903 1.19520 0.95459 0.91309 1.05976 0.91496 0.88775 0.84313 0.75688 0.85978 0.85689 0.85695 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.18 8.81 55.50 0.49 -22.69 16 2 C 0.03 0.80 5.26 -17.46 -0.09 0.71 16 3 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.29 -8.06 9.30 -15.01 -0.14 -8.20 16 8 H 0.11 3.04 7.42 -52.48 -0.39 2.65 16 9 N -0.41 -10.82 2.20 -117.38 -0.26 -11.08 16 10 C 0.14 3.22 4.79 -5.20 -0.02 3.19 16 11 C 0.51 12.13 5.52 36.00 0.20 12.32 16 12 O -0.52 -14.44 16.93 -18.75 -0.32 -14.76 16 13 O -0.53 -10.33 13.42 -39.25 -0.53 -10.85 16 14 C 0.53 13.92 7.33 -12.59 -0.09 13.83 16 15 O -0.57 -16.15 16.15 5.23 0.08 -16.06 16 16 C 0.05 1.08 6.96 -80.77 -0.56 0.52 16 17 N -0.23 -4.57 7.92 34.45 0.27 -4.30 16 18 N -0.43 -6.60 6.85 32.34 0.22 -6.38 16 19 H 0.44 4.78 8.96 -190.49 -1.71 3.07 16 20 C 0.07 1.06 7.38 -84.21 -0.62 0.44 16 21 C -0.13 -1.60 10.03 -39.81 -0.40 -2.00 16 22 C -0.09 -1.00 9.96 -39.90 -0.40 -1.40 16 23 C -0.16 -2.07 9.98 -39.89 -0.40 -2.47 16 24 C -0.03 -0.55 9.88 -39.78 -0.39 -0.94 16 25 C -0.12 -2.23 6.34 -105.05 -0.67 -2.89 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 27 H 0.09 2.01 5.47 -51.93 -0.28 1.73 16 28 H 0.14 3.36 6.07 -51.93 -0.32 3.05 16 29 H 0.39 5.89 9.10 45.56 0.41 6.30 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.14 2.48 7.67 -52.49 -0.40 2.08 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -34.81 293.07 -7.32 -42.13 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.09 Total: 10.95 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: -3.59 Total: 13.11 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.73 Total: -44.46 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.76 Total: -41.68 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.81 -7.32 -42.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.746 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds