Wall clock time and date at job start Fri Apr 10 2020 14:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37733 * 119.90124 * 179.73976 * 4 3 2 6 6 C 1.38971 * 120.09390 * 0.53731 * 5 4 3 7 7 O 1.35754 * 119.90662 * 179.69492 * 6 5 4 8 8 C 1.42904 * 117.00050 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99906 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00385 * 180.02562 * 9 8 7 12 12 N 1.40102 * 120.00183 * 180.02562 * 11 9 8 13 13 C 1.34770 * 119.99843 * 179.97438 * 12 11 9 14 14 O 1.21683 * 120.00436 * 0.02562 * 13 12 11 15 15 C 1.46376 * 119.99749 * 179.97438 * 13 12 11 16 16 H 1.07997 * 120.00518 * 0.02562 * 15 13 12 17 17 C 1.40050 * 119.99795 * 180.02562 * 15 13 12 18 18 N 1.30674 * 120.00331 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99902 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46974 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46696 * 119.99975 * 19 17 15 22 22 H 1.48495 * 109.46859 * 239.99853 * 19 17 15 23 23 C 1.38962 * 120.18650 * 359.71703 * 6 5 4 24 24 C 1.37732 * 120.09997 * 0.02562 * 23 6 5 25 25 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.95573 * 180.25420 * 5 4 3 27 27 H 1.09004 * 109.47351 * 300.00064 * 8 7 6 28 28 H 1.09005 * 109.46933 * 59.99727 * 8 7 6 29 29 H 0.97000 * 119.99907 * 359.97438 * 11 9 8 30 30 H 0.97000 * 119.99910 * 359.97438 * 12 11 9 31 31 H 0.96992 * 120.00236 * 179.97438 * 18 17 15 32 32 H 1.08003 * 119.94957 * 179.97438 * 23 6 5 33 33 H 1.07996 * 120.04713 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1996 1.1883 6 6 5.3389 0.0023 0.0000 7 8 6.6964 0.0038 -0.0002 8 6 7.3451 0.2133 1.2558 9 6 8.8391 0.1820 1.0611 10 8 9.3028 -0.0013 -0.0446 11 7 9.6600 0.3576 2.1154 12 7 11.0490 0.3289 1.9342 13 6 11.8698 0.5050 2.9885 14 8 11.4047 0.6885 4.0978 15 6 13.3210 0.4745 2.7992 16 1 13.7339 0.3114 1.8148 17 6 14.1740 0.6570 3.8949 18 7 13.6745 0.8540 5.0862 19 14 16.0260 0.6188 3.6533 20 1 16.3334 0.3822 2.2199 21 1 16.6071 1.9186 4.0757 22 1 16.6095 -0.4738 4.4722 23 6 4.6461 -0.1962 -1.1882 24 6 3.2688 -0.1974 -1.1928 25 1 2.7309 0.3627 2.1152 26 1 5.1882 0.3535 2.1096 27 1 7.0512 1.1823 1.6594 28 1 7.0531 -0.5736 1.9513 29 1 9.2892 0.5045 2.9996 30 1 11.4198 0.1823 1.0500 31 1 14.2652 0.9800 5.8451 32 1 5.1885 -0.3488 -2.1096 33 1 2.7313 -0.3513 -2.1167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771868619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:30 Heat of formation + Delta-G solvation = -19.921011 kcal Electronic energy + Delta-G solvation = -20529.077705 eV Core-core repulsion = 16942.995945 eV Total energy + Delta-G solvation = -3586.081760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76541 -39.43020 -38.15868 -37.14303 -36.36492 -34.26721 -32.64387 -31.80409 -31.17334 -30.53466 -28.16652 -26.10074 -23.75171 -23.30561 -20.89514 -20.64269 -19.32816 -18.59541 -17.93144 -16.84024 -16.60402 -16.35588 -15.98344 -15.29800 -14.99086 -14.63615 -14.48105 -14.15343 -14.14731 -13.97522 -13.86542 -13.23157 -12.95644 -12.77569 -12.64668 -12.47405 -12.46232 -11.46176 -11.35326 -11.34971 -11.20588 -10.73093 -10.39797 -10.25919 -9.79249 -9.57902 -9.04548 -8.65854 -8.05652 -7.30108 -6.45357 -4.90360 0.43906 0.84855 2.14416 2.36146 2.58545 2.68469 3.02996 3.10537 3.15464 3.27339 3.47885 3.58587 3.99536 4.22984 4.33052 4.34994 4.50245 4.64318 4.77064 4.82445 4.98538 5.08715 5.46969 5.48667 5.52262 5.57743 5.79265 5.87945 6.11823 6.86043 7.15047 7.18433 7.22684 7.66761 7.80264 8.07759 8.62759 8.77585 9.10683 10.27764 10.47166 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.056920 B = 0.002287 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.804493 B =12238.731337 C =12715.390139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.261 3.739 3 C -0.078 4.078 4 C -0.025 4.025 5 C -0.215 4.215 6 C 0.167 3.833 7 O -0.279 6.279 8 C 0.048 3.952 9 C 0.499 3.501 10 O -0.537 6.537 11 N -0.505 5.505 12 N -0.558 5.558 13 C 0.554 3.446 14 O -0.580 6.580 15 C -0.530 4.530 16 H 0.077 0.923 17 C 0.087 3.913 18 N -0.762 5.762 19 Si 0.918 3.082 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.151 4.151 24 C -0.028 4.028 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.425 0.575 30 H 0.415 0.585 31 H 0.272 0.728 32 H 0.145 0.855 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 -1.220 -7.308 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.054 4.054 3 C -0.082 4.082 4 C -0.045 4.045 5 C -0.234 4.234 6 C 0.119 3.881 7 O -0.190 6.190 8 C -0.032 4.032 9 C 0.282 3.718 10 O -0.414 6.414 11 N -0.248 5.248 12 N -0.313 5.313 13 C 0.360 3.640 14 O -0.461 6.461 15 C -0.568 4.568 16 H 0.095 0.905 17 C -0.134 4.134 18 N -0.390 5.390 19 Si 0.742 3.258 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.169 4.169 24 C -0.049 4.049 25 H 0.154 0.846 26 H 0.160 0.840 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.266 0.734 30 H 0.254 0.746 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.877 -1.203 -7.210 18.392 hybrid contribution 1.211 0.043 0.247 1.237 sum -15.666 -1.160 -6.963 17.183 Atomic orbital electron populations 1.81265 1.12127 1.09690 1.07320 1.25658 0.92563 0.93355 0.93777 1.15915 0.84386 1.12502 0.95417 1.20954 0.93330 0.93449 0.96794 1.21279 0.94888 1.09166 0.98039 1.19393 0.82438 0.91997 0.94233 1.86161 1.15721 1.85499 1.31618 1.22421 0.91133 1.03973 0.85661 1.19774 0.87120 0.80062 0.84877 1.90737 1.76724 1.49944 1.23958 1.44369 0.98498 1.70917 1.10991 1.45970 0.89910 1.81679 1.13715 1.18684 0.86394 0.77125 0.81841 1.90614 1.76510 1.55173 1.23842 1.20726 0.87414 1.52662 0.95980 0.90480 1.25730 1.00894 0.92434 0.94352 1.70005 1.36452 1.33082 0.99500 0.86138 0.81683 0.78421 0.79575 1.18460 1.19952 1.19948 1.20395 0.93074 1.06177 0.97290 1.20964 0.92978 0.94083 0.96837 0.84579 0.83996 0.88282 0.88288 0.73400 0.74574 0.91700 0.83710 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.94 18.54 41.83 0.78 -4.17 16 2 C 0.26 2.37 15.33 -22.47 -0.34 2.02 16 3 C -0.08 -0.56 5.74 -106.84 -0.61 -1.18 16 4 C -0.02 -0.16 9.75 -39.20 -0.38 -0.54 16 5 C -0.21 -1.48 9.01 -39.49 -0.36 -1.84 16 6 C 0.17 1.48 6.69 -39.04 -0.26 1.22 16 7 O -0.28 -3.23 9.66 -38.88 -0.38 -3.61 16 8 C 0.05 0.49 5.21 36.00 0.19 0.68 16 9 C 0.50 7.86 8.02 -10.99 -0.09 7.77 16 10 O -0.54 -10.56 16.34 -14.36 -0.23 -10.79 16 11 N -0.50 -8.93 6.26 31.22 0.20 -8.73 16 12 N -0.56 -12.17 6.25 30.19 0.19 -11.98 16 13 C 0.55 14.60 7.86 -12.99 -0.10 14.50 16 14 O -0.58 -16.97 14.86 5.20 0.08 -16.89 16 15 C -0.53 -13.95 9.54 -35.63 -0.34 -14.29 16 16 H 0.08 1.86 7.85 -52.49 -0.41 1.45 16 17 C 0.09 2.26 5.50 -17.36 -0.10 2.16 16 18 N -0.76 -21.22 11.83 55.55 0.66 -20.56 16 19 Si 0.92 18.86 29.56 -169.99 -5.02 13.83 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.15 -1.15 9.97 -39.50 -0.39 -1.54 16 24 C -0.03 -0.18 9.75 -39.20 -0.38 -0.56 16 25 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 26 H 0.14 0.71 6.28 -52.48 -0.33 0.38 16 27 H 0.10 0.73 7.65 -51.93 -0.40 0.33 16 28 H 0.10 0.73 7.65 -51.93 -0.40 0.33 16 29 H 0.43 6.89 8.00 -182.60 -1.46 5.43 16 30 H 0.41 8.65 7.98 -182.60 -1.46 7.20 16 31 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 32 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 314.87 15.07 4.74 4.74 Total: -1.00 -35.23 314.87 -7.02 -42.25 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.86 Total: 7.50 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -3.17 Total: 8.41 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 1.82 Total: -45.44 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.53 Total: -31.29 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.23 -7.02 -42.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771868619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.329 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds