Wall clock time and date at job start Fri Apr 10 2020 14:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37733 * 119.90124 * 179.73976 * 4 3 2 6 6 C 1.38971 * 120.09390 * 0.53731 * 5 4 3 7 7 O 1.35754 * 119.90662 * 179.69492 * 6 5 4 8 8 C 1.42904 * 117.00050 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99906 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00385 * 180.02562 * 9 8 7 12 12 N 1.40102 * 120.00183 * 180.02562 * 11 9 8 13 13 C 1.34770 * 119.99843 * 179.97438 * 12 11 9 14 14 O 1.21683 * 120.00436 * 0.02562 * 13 12 11 15 15 C 1.46376 * 119.99749 * 179.97438 * 13 12 11 16 16 H 1.07997 * 120.00518 * 0.02562 * 15 13 12 17 17 C 1.40050 * 119.99795 * 180.02562 * 15 13 12 18 18 N 1.30674 * 120.00331 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99902 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46974 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46696 * 119.99975 * 19 17 15 22 22 H 1.48495 * 109.46859 * 239.99853 * 19 17 15 23 23 C 1.38962 * 120.18650 * 359.71703 * 6 5 4 24 24 C 1.37732 * 120.09997 * 0.02562 * 23 6 5 25 25 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.95573 * 180.25420 * 5 4 3 27 27 H 1.09004 * 109.47351 * 300.00064 * 8 7 6 28 28 H 1.09005 * 109.46933 * 59.99727 * 8 7 6 29 29 H 0.97000 * 119.99907 * 359.97438 * 11 9 8 30 30 H 0.97000 * 119.99910 * 359.97438 * 12 11 9 31 31 H 0.96992 * 120.00236 * 179.97438 * 18 17 15 32 32 H 1.08003 * 119.94957 * 179.97438 * 23 6 5 33 33 H 1.07996 * 120.04713 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1996 1.1883 6 6 5.3389 0.0023 0.0000 7 8 6.6964 0.0038 -0.0002 8 6 7.3451 0.2133 1.2558 9 6 8.8391 0.1820 1.0611 10 8 9.3028 -0.0013 -0.0446 11 7 9.6600 0.3576 2.1154 12 7 11.0490 0.3289 1.9342 13 6 11.8698 0.5050 2.9885 14 8 11.4047 0.6885 4.0978 15 6 13.3210 0.4745 2.7992 16 1 13.7339 0.3114 1.8148 17 6 14.1740 0.6570 3.8949 18 7 13.6745 0.8540 5.0862 19 14 16.0260 0.6188 3.6533 20 1 16.3334 0.3822 2.2199 21 1 16.6071 1.9186 4.0757 22 1 16.6095 -0.4738 4.4722 23 6 4.6461 -0.1962 -1.1882 24 6 3.2688 -0.1974 -1.1928 25 1 2.7309 0.3627 2.1152 26 1 5.1882 0.3535 2.1096 27 1 7.0512 1.1823 1.6594 28 1 7.0531 -0.5736 1.9513 29 1 9.2892 0.5045 2.9996 30 1 11.4198 0.1823 1.0500 31 1 14.2652 0.9800 5.8451 32 1 5.1885 -0.3488 -2.1096 33 1 2.7313 -0.3513 -2.1167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771868619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:30 Heat of formation + Delta-G solvation = -45.226181 kcal Electronic energy + Delta-G solvation = -20530.175019 eV Core-core repulsion = 16942.995945 eV Total energy + Delta-G solvation = -3587.179074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55451 -40.66434 -39.27090 -38.64093 -37.13894 -35.94257 -34.62115 -32.68021 -32.12301 -31.46656 -29.35395 -27.86426 -24.39387 -23.97635 -22.48605 -22.15328 -19.95253 -19.52291 -19.29904 -18.38580 -17.84605 -17.46537 -17.26595 -16.70147 -15.81784 -15.75924 -15.55464 -15.36549 -14.99304 -14.90934 -14.64783 -14.54817 -14.49124 -14.03862 -13.53613 -13.32950 -13.27242 -13.08941 -12.84136 -12.72372 -12.06132 -11.99752 -11.93625 -11.91449 -11.14164 -10.96545 -10.11255 -10.08123 -9.29333 -9.01979 -8.39276 -6.94000 -0.15993 0.34645 0.96846 1.37505 1.45551 1.47058 1.62442 1.65550 1.93570 2.18436 2.34217 2.39427 2.89105 2.93106 3.23889 3.51644 3.74923 3.92429 3.94609 4.08324 4.11980 4.19202 4.46068 4.58735 5.00928 5.03504 5.24464 5.28253 5.35183 5.46197 5.58770 5.96986 6.11372 6.24475 6.36795 6.49665 6.78410 7.18338 7.25632 8.32313 8.55780 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.056920 B = 0.002287 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.804493 B =12238.731337 C =12715.390139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.286 3.714 3 C -0.085 4.085 4 C -0.019 4.019 5 C -0.211 4.211 6 C 0.151 3.849 7 O -0.308 6.308 8 C 0.056 3.944 9 C 0.502 3.498 10 O -0.578 6.578 11 N -0.506 5.506 12 N -0.559 5.559 13 C 0.544 3.456 14 O -0.618 6.618 15 C -0.560 4.560 16 H 0.091 0.909 17 C 0.035 3.965 18 N -0.811 5.811 19 Si 1.001 2.999 20 H -0.249 1.249 21 H -0.267 1.267 22 H -0.267 1.267 23 C -0.160 4.160 24 C -0.020 4.020 25 H 0.157 0.843 26 H 0.165 0.835 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.432 0.568 30 H 0.418 0.582 31 H 0.279 0.721 32 H 0.147 0.853 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.376 -1.247 -7.478 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.028 4.028 3 C -0.089 4.089 4 C -0.040 4.040 5 C -0.229 4.229 6 C 0.104 3.896 7 O -0.220 6.220 8 C -0.023 4.023 9 C 0.288 3.712 10 O -0.457 6.457 11 N -0.252 5.252 12 N -0.311 5.311 13 C 0.349 3.651 14 O -0.503 6.503 15 C -0.597 4.597 16 H 0.109 0.891 17 C -0.182 4.182 18 N -0.440 5.440 19 Si 0.820 3.180 20 H -0.172 1.172 21 H -0.192 1.192 22 H -0.192 1.192 23 C -0.178 4.178 24 C -0.040 4.040 25 H 0.175 0.825 26 H 0.183 0.817 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.274 0.726 30 H 0.258 0.742 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.004 -1.237 -7.419 18.594 hybrid contribution 1.122 0.037 0.209 1.141 sum -15.883 -1.200 -7.210 17.484 Atomic orbital electron populations 1.81293 1.13528 1.11536 1.08873 1.25844 0.92661 0.91945 0.92359 1.16022 0.83371 1.13239 0.96250 1.21192 0.93270 0.92254 0.97237 1.21488 0.95019 1.08279 0.98143 1.19609 0.81384 0.93198 0.95423 1.86101 1.17294 1.86327 1.32291 1.22483 0.86459 1.07278 0.86050 1.20856 0.89249 0.77645 0.83440 1.90717 1.78026 1.51418 1.25541 1.44552 0.96497 1.71921 1.12205 1.45448 0.92336 1.80563 1.12724 1.18838 0.87273 0.76937 0.82018 1.90569 1.77378 1.56923 1.25384 1.21260 0.88219 1.53149 0.97103 0.89057 1.26903 1.06548 0.91139 0.93621 1.70124 1.38923 1.34178 1.00760 0.84903 0.74284 0.78714 0.80059 1.17239 1.19193 1.19182 1.20527 0.93494 1.06454 0.97356 1.21120 0.92518 0.92935 0.97434 0.82526 0.81728 0.84736 0.84748 0.72589 0.74161 0.91044 0.83528 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.61 18.54 19.00 0.35 -10.26 16 2 C 0.29 4.75 15.33 88.33 1.35 6.10 16 3 C -0.08 -1.03 5.74 -21.30 -0.12 -1.15 16 4 C -0.02 -0.19 9.75 22.52 0.22 0.03 16 5 C -0.21 -2.20 9.01 22.33 0.20 -2.00 16 6 C 0.15 2.33 6.69 22.62 0.15 2.48 16 7 O -0.31 -6.55 9.66 -71.76 -0.69 -7.24 16 8 C 0.06 0.99 5.21 71.23 0.37 1.36 16 9 C 0.50 15.28 8.02 87.66 0.70 15.98 16 10 O -0.58 -22.65 16.34 15.99 0.26 -22.39 16 11 N -0.51 -17.69 6.26 -173.53 -1.09 -18.77 16 12 N -0.56 -24.63 6.25 -176.64 -1.10 -25.73 16 13 C 0.54 29.20 7.86 86.36 0.68 29.88 16 14 O -0.62 -36.95 14.86 -4.30 -0.06 -37.02 16 15 C -0.56 -29.74 9.54 24.83 0.24 -29.50 16 16 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 17 C 0.03 1.80 5.50 85.30 0.47 2.27 16 18 N -0.81 -45.81 11.83 21.84 0.26 -45.55 16 19 Si 1.00 38.25 29.56 68.60 2.03 40.28 16 20 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 21 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 23 C -0.16 -2.17 9.97 22.32 0.22 -1.94 16 24 C -0.02 -0.21 9.75 22.52 0.22 0.01 16 25 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 26 H 0.17 0.91 6.28 -2.91 -0.02 0.89 16 27 H 0.14 1.47 7.65 -2.38 -0.02 1.45 16 28 H 0.14 1.47 7.65 -2.38 -0.02 1.45 16 29 H 0.43 13.73 8.00 -213.32 -1.71 12.02 16 30 H 0.42 17.72 7.98 -213.32 -1.70 16.01 16 31 H 0.28 14.18 8.29 -92.71 -0.77 13.41 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -78.76 314.87 2.45 -76.30 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -2.20 Total: 26.86 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 4.71 Total: 23.52 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -1.58 Total: -100.32 kcal Atomic # 8 Polarization: -66.15 SS G_CDS: -0.50 Total: -66.65 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -78.76 2.45 -76.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771868619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.079 kcal (2) G-P(sol) polarization free energy of solvation -78.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds