Wall clock time and date at job start Fri Apr 10 2020 14:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48503 * 109.46878 * 90.00212 * 3 2 1 5 5 H 1.48498 * 109.47085 * 210.00037 * 3 2 1 6 6 H 1.48492 * 109.47223 * 330.00340 * 3 2 1 7 7 C 1.40295 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00433 * 159.90905 * 7 2 1 9 9 C 1.40862 * 120.00017 * 339.90268 * 7 2 1 10 10 C 1.40706 * 120.33191 * 325.51587 * 9 7 2 11 11 C 1.37595 * 119.88644 * 180.02562 * 10 9 7 12 12 C 1.38837 * 120.58537 * 359.97438 * 11 10 9 13 13 C 1.38205 * 120.68280 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08259 * 359.71624 * 13 12 11 15 15 C 1.47288 * 120.28542 * 180.27748 * 14 13 12 16 16 O 1.21528 * 119.99420 * 174.58321 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.58766 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.46971 * 179.97438 * 18 17 15 20 20 N 1.30892 * 125.91455 * 180.02562 * 19 18 17 21 21 C 1.33538 * 109.78281 * 180.02562 * 20 19 18 22 22 O 1.35863 * 125.58518 * 180.02562 * 21 20 19 23 23 N 1.31070 * 108.82218 * 359.97438 * 21 20 19 24 24 N 1.34354 * 125.91119 * 359.71307 * 19 18 17 25 25 H 0.97001 * 126.77833 * 0.02562 * 24 19 18 26 26 H 0.96993 * 119.99891 * 174.71364 * 1 2 3 27 27 H 1.07997 * 120.06013 * 359.97291 * 10 9 7 28 28 H 1.08005 * 119.70826 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.65847 * 179.97438 * 12 11 10 30 30 H 1.07995 * 119.95698 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 32 32 H 1.08993 * 109.47127 * 59.99651 * 18 17 15 33 33 H 0.96704 * 113.99935 * 90.00007 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4878 2.0463 1.4001 5 1 3.5378 1.4401 -0.7000 6 1 1.4377 2.6526 -0.6999 7 6 2.0077 -1.2150 -0.0005 8 1 3.0384 -1.2434 -0.3218 9 6 1.3676 -2.3979 0.4181 10 6 0.4089 -2.3611 1.4473 11 6 -0.2103 -3.5222 1.8494 12 6 0.1017 -4.7340 1.2478 13 6 1.0397 -4.7977 0.2348 14 6 1.6797 -3.6387 -0.1980 15 6 2.6756 -3.7005 -1.2814 16 8 3.1582 -2.6759 -1.7221 17 8 3.0516 -4.8934 -1.7841 18 6 4.0376 -4.8784 -2.8498 19 6 4.3323 -6.2919 -3.2814 20 7 5.1731 -6.6489 -4.2189 21 6 5.1819 -7.9792 -4.3354 22 8 5.9391 -8.6912 -5.2104 23 7 4.3411 -8.4854 -3.4666 24 7 3.7819 -7.4041 -2.7664 25 1 3.1256 -7.4508 -2.0536 26 1 -0.4849 -0.8364 -0.0774 27 1 0.1600 -1.4233 1.9215 28 1 -0.9455 -3.4907 2.6399 29 1 -0.3932 -5.6364 1.5755 30 1 1.2730 -5.7465 -0.2252 31 1 3.6486 -4.3132 -3.6968 32 1 4.9538 -4.4101 -2.4905 33 1 6.8055 -8.9456 -4.8644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774908390.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:06 Heat of formation + Delta-G solvation = -17.190564 kcal Electronic energy + Delta-G solvation = -21724.379097 eV Core-core repulsion = 18138.415738 eV Total energy + Delta-G solvation = -3585.963359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.40459 -39.74345 -37.82121 -37.56157 -35.72532 -34.13320 -32.55471 -31.79281 -30.34178 -29.62297 -27.59048 -25.50679 -23.25829 -22.49051 -21.33395 -21.20426 -20.12150 -18.77021 -18.23282 -17.79759 -16.89724 -16.51583 -16.04996 -15.70347 -15.02346 -14.58404 -14.48015 -14.22295 -14.00061 -13.29025 -13.04143 -12.75278 -12.47375 -12.31466 -12.12157 -11.86265 -11.33837 -11.11586 -10.92578 -10.62117 -10.50910 -10.38468 -10.30901 -10.16543 -9.94005 -9.65302 -9.27895 -9.12344 -8.03403 -7.84954 -7.40744 -4.73732 1.24814 1.89064 2.13635 2.46504 2.56755 2.67606 3.08915 3.18090 3.29751 3.44872 3.55435 3.88150 4.39568 4.44673 4.75733 5.15706 5.23476 5.26128 5.62822 5.78434 5.81496 5.86889 6.00828 6.25224 6.54523 6.73113 6.78484 6.88545 7.09368 7.16639 7.29181 7.39123 7.55071 7.65114 7.74733 7.88467 7.97008 8.43555 8.57133 8.71499 9.80559 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.003960 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.250391 B = 7068.460912 C = 8239.549150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.032 3.968 3 Si 1.073 2.927 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.121 3.879 10 C -0.197 4.197 11 C -0.070 4.070 12 C -0.258 4.258 13 C -0.024 4.024 14 C -0.256 4.256 15 C 0.510 3.490 16 O -0.504 6.504 17 O -0.380 6.380 18 C 0.145 3.855 19 C 0.316 3.684 20 N -0.545 5.545 21 C 0.404 3.596 22 O -0.439 6.439 23 N -0.313 5.313 24 N -0.448 5.448 25 H 0.454 0.546 26 H 0.301 0.699 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -8.271 -1.841 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.191 4.191 3 Si 0.895 3.105 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.124 0.876 9 C 0.117 3.883 10 C -0.216 4.216 11 C -0.089 4.089 12 C -0.277 4.277 13 C -0.042 4.042 14 C -0.259 4.259 15 C 0.361 3.639 16 O -0.393 6.393 17 O -0.299 6.299 18 C 0.067 3.933 19 C 0.038 3.962 20 N -0.285 5.285 21 C 0.085 3.915 22 O -0.239 6.239 23 N -0.156 5.156 24 N -0.171 5.171 25 H 0.303 0.697 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.574 -6.877 -2.594 9.224 hybrid contribution 0.168 -1.852 0.550 1.940 sum 5.742 -8.729 -2.044 10.646 Atomic orbital electron populations 1.70367 1.08272 1.34585 1.27010 1.27353 0.95627 1.04845 0.91286 0.83512 0.75769 0.72933 0.78272 1.19825 1.19550 1.19897 1.21270 1.01777 0.92190 1.33485 0.87637 1.17443 0.89924 0.91526 0.89448 1.21231 1.02836 0.97385 1.00131 1.20826 0.97255 0.93118 0.97660 1.20342 1.06128 0.96876 1.04389 1.20845 0.93404 0.95844 0.94127 1.18564 1.08047 0.95915 1.03366 1.21310 0.81321 0.79363 0.81903 1.90792 1.54616 1.33924 1.60006 1.86437 1.56281 1.37558 1.49665 1.20927 0.94200 0.86482 0.91650 1.23670 0.90739 0.91450 0.90371 1.70122 1.24172 1.13339 1.20875 1.21042 0.94196 0.85840 0.90466 1.84920 1.32133 1.70992 1.35811 1.78201 1.17301 1.08748 1.11358 1.47716 1.35686 1.02982 1.30683 0.69719 0.88550 0.87195 0.88490 0.88465 0.88036 0.87328 0.87344 0.73534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.42 12.59 55.57 0.70 -18.72 16 2 C 0.03 0.77 5.02 -17.29 -0.09 0.68 16 3 Si 1.07 20.76 29.98 -169.99 -5.10 15.67 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.62 7.60 -37.82 -0.29 -11.90 16 8 H 0.11 2.74 6.01 -52.49 -0.32 2.43 16 9 C 0.12 2.95 5.15 -106.53 -0.55 2.40 16 10 C -0.20 -4.51 7.90 -38.88 -0.31 -4.82 16 11 C -0.07 -1.41 10.01 -39.59 -0.40 -1.81 16 12 C -0.26 -4.99 10.03 -39.37 -0.39 -5.39 16 13 C -0.02 -0.47 9.60 -39.20 -0.38 -0.84 16 14 C -0.26 -5.76 5.92 -104.39 -0.62 -6.38 16 15 C 0.51 10.75 7.84 34.41 0.27 11.02 16 16 O -0.50 -11.77 13.40 -19.29 -0.26 -12.02 16 17 O -0.38 -6.29 9.00 -40.78 -0.37 -6.66 16 18 C 0.14 2.04 6.10 36.01 0.22 2.26 16 19 C 0.32 4.37 8.04 -155.71 -1.25 3.12 16 20 N -0.55 -8.05 11.21 -12.10 -0.14 -8.19 16 21 C 0.40 5.62 9.46 -91.25 -0.86 4.76 16 22 O -0.44 -4.85 13.66 -19.31 -0.26 -5.11 16 23 N -0.31 -4.40 12.81 29.18 0.37 -4.03 16 24 N -0.45 -5.78 7.27 32.62 0.24 -5.55 16 25 H 0.45 4.92 8.61 -182.34 -1.57 3.35 16 26 H 0.30 7.64 6.64 -40.82 -0.27 7.37 16 27 H 0.11 2.56 7.00 -52.49 -0.37 2.19 16 28 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.10 1.69 7.61 -52.49 -0.40 1.29 16 31 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.41 2.13 9.06 45.56 0.41 2.55 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -29.47 301.27 -7.91 -37.38 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.00 Total: 9.58 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -4.64 Total: -6.90 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 1.18 Total: -36.48 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.89 Total: -23.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.10 Total: 15.67 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.47 -7.91 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774908390.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.187 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds