Wall clock time and date at job start Fri Apr 10 2020 14:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48503 * 109.46878 * 90.00212 * 3 2 1 5 5 H 1.48498 * 109.47085 * 210.00037 * 3 2 1 6 6 H 1.48492 * 109.47223 * 330.00340 * 3 2 1 7 7 C 1.40295 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00433 * 159.90905 * 7 2 1 9 9 C 1.40862 * 120.00017 * 339.90268 * 7 2 1 10 10 C 1.40706 * 120.33191 * 325.51587 * 9 7 2 11 11 C 1.37595 * 119.88644 * 180.02562 * 10 9 7 12 12 C 1.38837 * 120.58537 * 359.97438 * 11 10 9 13 13 C 1.38205 * 120.68280 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08259 * 359.71624 * 13 12 11 15 15 C 1.47288 * 120.28542 * 180.27748 * 14 13 12 16 16 O 1.21528 * 119.99420 * 174.58321 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.58766 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.46971 * 179.97438 * 18 17 15 20 20 N 1.30892 * 125.91455 * 180.02562 * 19 18 17 21 21 C 1.33538 * 109.78281 * 180.02562 * 20 19 18 22 22 O 1.35863 * 125.58518 * 180.02562 * 21 20 19 23 23 N 1.31070 * 108.82218 * 359.97438 * 21 20 19 24 24 N 1.34354 * 125.91119 * 359.71307 * 19 18 17 25 25 H 0.97001 * 126.77833 * 0.02562 * 24 19 18 26 26 H 0.96993 * 119.99891 * 174.71364 * 1 2 3 27 27 H 1.07997 * 120.06013 * 359.97291 * 10 9 7 28 28 H 1.08005 * 119.70826 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.65847 * 179.97438 * 12 11 10 30 30 H 1.07995 * 119.95698 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 32 32 H 1.08993 * 109.47127 * 59.99651 * 18 17 15 33 33 H 0.96704 * 113.99935 * 90.00007 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4878 2.0463 1.4001 5 1 3.5378 1.4401 -0.7000 6 1 1.4377 2.6526 -0.6999 7 6 2.0077 -1.2150 -0.0005 8 1 3.0384 -1.2434 -0.3218 9 6 1.3676 -2.3979 0.4181 10 6 0.4089 -2.3611 1.4473 11 6 -0.2103 -3.5222 1.8494 12 6 0.1017 -4.7340 1.2478 13 6 1.0397 -4.7977 0.2348 14 6 1.6797 -3.6387 -0.1980 15 6 2.6756 -3.7005 -1.2814 16 8 3.1582 -2.6759 -1.7221 17 8 3.0516 -4.8934 -1.7841 18 6 4.0376 -4.8784 -2.8498 19 6 4.3323 -6.2919 -3.2814 20 7 5.1731 -6.6489 -4.2189 21 6 5.1819 -7.9792 -4.3354 22 8 5.9391 -8.6912 -5.2104 23 7 4.3411 -8.4854 -3.4666 24 7 3.7819 -7.4041 -2.7664 25 1 3.1256 -7.4508 -2.0536 26 1 -0.4849 -0.8364 -0.0774 27 1 0.1600 -1.4233 1.9215 28 1 -0.9455 -3.4907 2.6399 29 1 -0.3932 -5.6364 1.5755 30 1 1.2730 -5.7465 -0.2252 31 1 3.6486 -4.3132 -3.6968 32 1 4.9538 -4.4101 -2.4905 33 1 6.8055 -8.9456 -4.8644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774908390.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:06 Heat of formation + Delta-G solvation = -39.371967 kcal Electronic energy + Delta-G solvation = -21725.340954 eV Core-core repulsion = 18138.415738 eV Total energy + Delta-G solvation = -3586.925217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.47210 -41.33040 -39.35932 -38.56716 -37.31041 -35.84637 -33.64125 -32.96589 -31.95988 -31.30631 -28.81811 -27.21582 -24.76902 -23.66057 -22.92053 -22.38166 -21.69555 -19.99030 -19.78848 -18.83704 -18.45818 -17.73953 -17.48430 -16.93361 -16.61722 -16.02158 -15.94621 -15.54391 -15.44751 -14.74348 -14.58227 -14.25492 -13.98979 -13.72089 -13.29771 -13.10872 -12.97233 -12.72364 -12.51159 -12.11421 -12.01890 -11.96676 -11.60052 -11.38610 -11.22547 -10.99305 -10.83116 -10.73327 -9.72739 -9.56449 -9.20480 -6.56284 0.19226 0.20621 0.88958 1.12344 1.36192 1.42125 1.50352 1.64051 1.79399 1.88849 2.29812 2.35874 2.67329 3.34558 3.46102 3.65002 4.02493 4.04491 4.28099 4.33000 4.45372 4.68852 4.76344 4.85099 4.88330 5.04962 5.25204 5.41095 5.59662 5.67100 5.81783 5.83472 5.92658 6.14526 6.26453 6.45335 6.67108 6.68848 6.78743 7.07466 7.98059 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.003960 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.250391 B = 7068.460912 C = 8239.549150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.002 3.998 3 Si 1.116 2.884 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.504 4.504 8 H 0.087 0.913 9 C 0.102 3.898 10 C -0.223 4.223 11 C -0.063 4.063 12 C -0.246 4.246 13 C -0.024 4.024 14 C -0.274 4.274 15 C 0.516 3.484 16 O -0.531 6.531 17 O -0.363 6.363 18 C 0.148 3.852 19 C 0.318 3.682 20 N -0.562 5.562 21 C 0.403 3.597 22 O -0.442 6.442 23 N -0.324 5.324 24 N -0.441 5.441 25 H 0.463 0.537 26 H 0.286 0.714 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 -10.298 -1.597 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.215 4.215 3 Si 0.933 3.067 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.531 4.531 8 H 0.105 0.895 9 C 0.098 3.902 10 C -0.242 4.242 11 C -0.082 4.082 12 C -0.265 4.265 13 C -0.042 4.042 14 C -0.277 4.277 15 C 0.367 3.633 16 O -0.423 6.423 17 O -0.282 6.282 18 C 0.071 3.929 19 C 0.039 3.961 20 N -0.303 5.303 21 C 0.084 3.916 22 O -0.245 6.245 23 N -0.167 5.167 24 N -0.164 5.164 25 H 0.313 0.687 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 5.693 -8.958 -2.332 10.866 hybrid contribution 0.162 -1.566 0.443 1.636 sum 5.855 -10.524 -1.889 12.190 Atomic orbital electron populations 1.70470 1.08722 1.33476 1.30234 1.28466 0.95718 1.07365 0.89968 0.82998 0.74691 0.69850 0.79158 1.18073 1.19383 1.19434 1.21215 1.01452 0.93613 1.36797 0.89486 1.17803 0.90372 0.92318 0.89728 1.21202 1.04174 0.98044 1.00755 1.21232 0.96699 0.92546 0.97717 1.20862 1.04901 0.97784 1.02958 1.21252 0.92627 0.96304 0.94001 1.18940 1.08653 0.96395 1.03739 1.21152 0.80740 0.79886 0.81506 1.90786 1.55453 1.35305 1.60714 1.86354 1.56650 1.35011 1.50140 1.21028 0.93820 0.87123 0.90909 1.23416 0.90966 0.91207 0.90546 1.70110 1.24723 1.14046 1.21398 1.21220 0.94327 0.85699 0.90396 1.84886 1.33557 1.70483 1.35604 1.78183 1.17646 1.09110 1.11766 1.47680 1.35583 1.02474 1.30671 0.68695 0.90130 0.88741 0.85477 0.84521 0.84416 0.86970 0.86499 0.70702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.78 12.59 21.88 0.28 -41.51 16 2 C 0.00 0.10 5.02 85.37 0.43 0.53 16 3 Si 1.12 43.10 29.98 68.60 2.06 45.16 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 7 C -0.50 -26.49 7.60 23.41 0.18 -26.31 16 8 H 0.09 4.77 6.01 -2.91 -0.02 4.75 16 9 C 0.10 5.07 5.15 -21.10 -0.11 4.96 16 10 C -0.22 -10.31 7.90 22.72 0.18 -10.13 16 11 C -0.06 -2.44 10.01 22.26 0.22 -2.21 16 12 C -0.25 -8.57 10.03 22.41 0.22 -8.35 16 13 C -0.02 -0.87 9.60 22.52 0.22 -0.65 16 14 C -0.27 -12.18 5.92 -19.71 -0.12 -12.30 16 15 C 0.52 21.55 7.84 70.20 0.55 22.10 16 16 O -0.53 -25.25 13.40 19.74 0.26 -24.99 16 17 O -0.36 -11.41 9.00 -57.15 -0.51 -11.92 16 18 C 0.15 3.96 6.10 71.24 0.43 4.39 16 19 C 0.32 8.19 8.04 138.23 1.11 9.31 16 20 N -0.56 -15.65 11.21 -304.31 -3.41 -19.06 16 21 C 0.40 10.43 9.46 180.57 1.71 12.14 16 22 O -0.44 -8.82 13.66 -92.01 -1.26 -10.08 16 23 N -0.32 -8.43 12.81 -174.94 -2.24 -10.67 16 24 N -0.44 -10.39 7.27 -50.72 -0.37 -10.75 16 25 H 0.46 8.80 8.61 -213.10 -1.83 6.96 16 26 H 0.29 15.26 6.64 -92.71 -0.62 14.65 16 27 H 0.09 4.58 7.00 -2.91 -0.02 4.56 16 28 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.14 3.97 7.61 -2.91 -0.02 3.95 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.43 3.51 9.06 -74.05 -0.67 2.84 16 Total: -1.00 -64.85 301.27 -1.31 -66.16 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -1.15 Total: 24.19 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.03 Total: -6.51 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -5.74 Total: -82.00 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -1.51 Total: -46.99 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.06 Total: 45.16 kcal Total: -64.85 -1.31 -66.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774908390.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.788 kcal (2) G-P(sol) polarization free energy of solvation -64.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds