Wall clock time and date at job start Fri Apr 10 2020 14:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48494 * 109.47335 * 274.53330 * 3 2 1 5 5 H 1.48502 * 109.47073 * 34.53649 * 3 2 1 6 6 H 1.48499 * 109.46895 * 154.53406 * 3 2 1 7 7 C 1.40247 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99630 * 198.01098 * 7 2 1 9 9 C 1.41094 * 119.99918 * 18.00828 * 7 2 1 10 10 C 1.40893 * 120.09503 * 205.06677 * 9 7 2 11 11 C 1.36302 * 119.89723 * 180.02562 * 10 9 7 12 12 C 1.40069 * 120.09732 * 359.97438 * 11 10 9 13 13 C 1.47508 * 119.89547 * 179.97438 * 12 11 10 14 14 O 1.21505 * 120.00520 * 0.02562 * 13 12 11 15 15 O 1.34784 * 119.99684 * 179.97438 * 13 12 11 16 16 C 1.45200 * 116.99758 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.46927 * 179.97438 * 16 15 13 18 18 N 1.30887 * 125.91441 * 180.02562 * 17 16 15 19 19 C 1.33541 * 109.78419 * 179.97438 * 18 17 16 20 20 O 1.35866 * 125.58676 * 180.02562 * 19 18 17 21 21 N 1.31067 * 108.82210 * 0.26108 * 19 18 17 22 22 N 1.34351 * 125.91015 * 359.97438 * 17 16 15 23 23 H 0.96999 * 126.77840 * 0.02721 * 22 17 16 24 24 C 1.40062 * 120.20125 * 0.25966 * 12 11 10 25 25 C 1.36303 * 120.10036 * 359.47696 * 24 12 11 26 26 H 0.97002 * 120.00204 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.05480 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.95042 * 179.97438 * 11 10 9 29 29 H 1.09002 * 109.46782 * 60.00393 * 16 15 13 30 30 H 1.08990 * 109.47416 * 300.00569 * 16 15 13 31 31 H 0.96698 * 114.00023 * 89.99716 * 20 19 18 32 32 H 1.07996 * 119.95051 * 179.74969 * 24 12 11 33 33 H 1.07994 * 120.04962 * 180.23493 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3920 2.1019 -1.3956 5 1 1.4889 2.6231 0.7938 6 1 3.5825 1.4145 0.6020 7 6 2.0076 -1.2146 -0.0005 8 1 3.0479 -1.2375 0.2887 9 6 1.3539 -2.4064 -0.3788 10 6 1.8212 -3.6489 0.0933 11 6 1.1870 -4.7978 -0.2751 12 6 0.0721 -4.7443 -1.1213 13 6 -0.6105 -5.9904 -1.5177 14 8 -0.2058 -7.0611 -1.1099 15 8 -1.6838 -5.9413 -2.3314 16 6 -2.3049 -7.2066 -2.6803 17 6 -3.4804 -6.9553 -3.5893 18 7 -4.2681 -7.8695 -4.0961 19 6 -5.2030 -7.2909 -4.8541 20 8 -6.1852 -7.9406 -5.5316 21 7 -5.0145 -5.9939 -4.8414 22 7 -3.9017 -5.7541 -4.0189 23 1 -3.5118 -4.8918 -3.8062 24 6 -0.3929 -3.5117 -1.5970 25 6 0.2318 -2.3574 -1.2294 26 1 -0.4850 0.8400 0.0004 27 1 2.6811 -3.6911 0.7454 28 1 1.5447 -5.7507 0.0859 29 1 -2.6473 -7.7054 -1.7736 30 1 -1.5789 -7.8391 -3.1909 31 1 -6.9991 -8.0621 -5.0238 32 1 -1.2505 -3.4756 -2.2525 33 1 -0.1298 -1.4072 -1.5937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774992712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:08 Heat of formation + Delta-G solvation = -39.561897 kcal Electronic energy + Delta-G solvation = -21177.560846 eV Core-core repulsion = 17590.627393 eV Total energy + Delta-G solvation = -3586.933453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45874 -41.33544 -39.29542 -38.56907 -37.42326 -35.74345 -33.62472 -32.96237 -32.08279 -31.35915 -29.03447 -27.64814 -24.41021 -23.56013 -22.81996 -22.36734 -21.72913 -19.84080 -19.39219 -18.89127 -18.54654 -17.78493 -17.72691 -17.11816 -16.91442 -15.95289 -15.71393 -15.45937 -15.22951 -14.75535 -14.36624 -14.26471 -13.93297 -13.68320 -13.28909 -13.26568 -13.06592 -12.88385 -12.66832 -12.40915 -12.08027 -11.82071 -11.41940 -11.37318 -11.30545 -11.21354 -11.14021 -10.73152 -9.61266 -9.51488 -8.85258 -6.54606 0.21562 0.23647 1.12495 1.16121 1.36087 1.37411 1.41977 1.43689 1.54528 1.87540 2.14990 2.36524 2.67863 3.34478 3.63908 3.66305 4.01023 4.07134 4.33237 4.40927 4.44641 4.73153 4.86454 4.94735 4.99223 5.13090 5.19426 5.26995 5.57135 5.81404 5.83136 5.91455 5.97221 6.17331 6.46235 6.50556 6.69243 6.71759 6.83240 6.93095 8.09244 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.003171 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.331997 B = 8828.491346 C = 9879.575648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.460 4.460 8 H 0.091 0.909 9 C 0.105 3.895 10 C -0.251 4.251 11 C -0.021 4.021 12 C -0.287 4.287 13 C 0.534 3.466 14 O -0.556 6.556 15 O -0.362 6.362 16 C 0.147 3.853 17 C 0.316 3.684 18 N -0.561 5.561 19 C 0.403 3.597 20 O -0.442 6.442 21 N -0.327 5.327 22 N -0.443 5.443 23 H 0.462 0.538 24 C -0.038 4.038 25 C -0.204 4.204 26 H 0.299 0.701 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.431 0.569 32 H 0.125 0.875 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 -4.400 -4.423 9.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.486 4.486 8 H 0.109 0.891 9 C 0.102 3.898 10 C -0.271 4.271 11 C -0.039 4.039 12 C -0.290 4.290 13 C 0.386 3.614 14 O -0.450 6.450 15 O -0.279 6.279 16 C 0.071 3.929 17 C 0.037 3.963 18 N -0.302 5.302 19 C 0.084 3.916 20 O -0.245 6.245 21 N -0.170 5.170 22 N -0.166 5.166 23 H 0.312 0.688 24 C -0.056 4.056 25 C -0.223 4.223 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.293 0.707 32 H 0.143 0.857 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.011 -4.570 -5.181 9.843 hybrid contribution 0.103 0.914 0.617 1.108 sum -6.909 -3.655 -4.564 9.051 Atomic orbital electron populations 1.69747 1.09296 1.31931 1.30168 1.26959 0.95530 1.04940 0.90831 0.85090 0.79279 0.75223 0.79712 1.18434 1.19025 1.17873 1.20258 0.98992 0.92123 1.37269 0.89106 1.18201 0.90963 0.93083 0.87573 1.20870 1.05455 0.92438 1.08290 1.20526 0.92530 0.97669 0.93187 1.18353 1.04999 0.89837 1.15774 1.21103 0.76557 0.89493 0.74235 1.90742 1.66113 1.32187 1.55922 1.86377 1.43739 1.34676 1.63119 1.21147 0.89300 0.84668 0.97799 1.23540 0.95560 0.82161 0.95049 1.70105 1.08954 1.33625 1.17475 1.21224 0.92267 0.85612 0.92541 1.84884 1.25163 1.75525 1.38965 1.78203 1.05287 1.16461 1.17075 1.47718 1.22854 1.10758 1.35317 0.68789 1.20802 0.97323 0.91266 0.96231 1.21010 1.00853 0.97432 1.03002 0.88942 0.87075 0.86759 0.85974 0.86149 0.70704 0.85678 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.54 10.99 21.87 0.24 -35.30 16 2 C 0.04 1.65 5.13 85.36 0.44 2.08 16 3 Si 0.99 32.56 29.60 68.60 2.03 34.59 16 4 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 5 H -0.27 -8.38 7.11 99.48 0.71 -7.67 16 6 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 7 C -0.46 -21.59 9.04 23.46 0.21 -21.38 16 8 H 0.09 4.06 7.91 -2.91 -0.02 4.03 16 9 C 0.11 5.07 5.57 -21.28 -0.12 4.95 16 10 C -0.25 -11.31 9.73 22.47 0.22 -11.09 16 11 C -0.02 -0.88 9.52 22.26 0.21 -0.67 16 12 C -0.29 -11.85 5.89 -19.95 -0.12 -11.97 16 13 C 0.53 19.54 7.89 70.27 0.55 20.10 16 14 O -0.56 -21.91 16.11 19.82 0.32 -21.59 16 15 O -0.36 -10.53 8.97 -56.95 -0.51 -11.04 16 16 C 0.15 3.49 6.10 71.24 0.43 3.93 16 17 C 0.32 7.79 8.04 138.23 1.11 8.90 16 18 N -0.56 -15.02 11.21 -304.31 -3.41 -18.43 16 19 C 0.40 10.34 9.46 180.57 1.71 12.05 16 20 O -0.44 -8.73 13.66 -92.04 -1.26 -9.99 16 21 N -0.33 -8.69 12.81 -174.94 -2.24 -10.93 16 22 N -0.44 -10.63 7.28 -50.72 -0.37 -10.99 16 23 H 0.46 9.44 8.61 -213.10 -1.83 7.60 16 24 C -0.04 -1.54 9.55 22.26 0.21 -1.33 16 25 C -0.20 -9.43 8.63 22.47 0.19 -9.24 16 26 H 0.30 11.96 8.29 -92.71 -0.77 11.19 16 27 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 28 H 0.11 4.56 7.63 -2.91 -0.02 4.54 16 29 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.43 3.45 9.06 -74.06 -0.67 2.78 16 32 H 0.13 4.34 7.59 -2.91 -0.02 4.32 16 33 H 0.11 5.31 6.19 -2.91 -0.02 5.30 16 Total: -1.00 -59.13 306.10 -1.44 -60.57 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -1.30 Total: 26.78 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.06 Total: -3.67 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -5.78 Total: -75.65 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.45 Total: -42.62 kcal Atomic # 14 Polarization: 32.56 SS G_CDS: 2.03 Total: 34.59 kcal Total: -59.13 -1.44 -60.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774992712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.010 kcal (2) G-P(sol) polarization free energy of solvation -59.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds