Wall clock time and date at job start Fri Apr 10 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86808 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47067 * 270.00332 * 3 2 1 5 5 H 1.48501 * 109.47006 * 29.99902 * 3 2 1 6 6 H 1.48495 * 109.46967 * 150.00130 * 3 2 1 7 7 C 1.40227 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00457 * 197.87050 * 7 2 1 9 9 C 1.41114 * 119.99416 * 17.86468 * 7 2 1 10 10 C 1.40895 * 120.09884 * 204.63841 * 9 7 2 11 11 C 1.36313 * 119.88946 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10636 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89218 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00144 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99637 * 180.02562 * 13 12 11 16 16 N 1.40101 * 119.99739 * 180.02562 * 15 13 12 17 17 C 1.47315 * 126.68709 * 254.71434 * 16 15 13 18 18 C 1.51590 * 103.58882 * 179.97438 * 17 16 15 19 19 O 1.21232 * 127.15253 * 180.02562 * 18 17 16 20 20 N 1.34769 * 105.68417 * 0.33485 * 18 17 16 21 21 C 1.33789 * 111.64406 * 359.77736 * 20 18 17 22 22 O 1.21539 * 123.77124 * 180.02562 * 21 20 18 23 23 C 1.40007 * 120.20944 * 0.26342 * 12 11 10 24 24 C 1.36316 * 120.10852 * 359.43315 * 23 12 11 25 25 H 0.96998 * 120.00197 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.05254 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.94551 * 180.02562 * 11 10 9 28 28 H 0.96999 * 119.99866 * 0.02562 * 15 13 12 29 29 H 1.09005 * 110.59957 * 298.55795 * 17 16 15 30 30 H 1.08996 * 110.60257 * 61.51286 * 17 16 15 31 31 H 0.96993 * 124.17478 * 179.82188 * 20 18 17 32 32 H 1.08004 * 119.94565 * 179.70323 * 23 12 11 33 33 H 1.08004 * 120.05722 * 180.28306 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0076 -1.2143 -0.0005 8 1 3.0486 -1.2370 0.2864 9 6 1.3531 -2.4068 -0.3760 10 6 1.8267 -3.6495 0.0893 11 6 1.1915 -4.7987 -0.2765 12 6 0.0704 -4.7456 -1.1136 13 6 -0.6137 -5.9934 -1.5072 14 8 -0.2036 -7.0647 -1.1042 15 7 -1.6928 -5.9448 -2.3134 16 7 -2.3422 -7.1288 -2.6865 17 6 -2.2771 -7.7919 -4.0004 18 6 -3.1612 -9.0112 -3.8281 19 8 -3.4077 -9.8600 -4.6579 20 7 -3.6216 -8.9516 -2.5629 21 6 -3.1523 -7.8780 -1.9171 22 8 -3.4270 -7.6097 -0.7639 23 6 -0.4003 -3.5136 -1.5833 24 6 0.2246 -2.3585 -1.2180 25 1 -0.4850 0.8400 -0.0004 26 1 2.6921 -3.6914 0.7340 27 1 1.5536 -5.7517 0.0800 28 1 -2.0196 -5.0901 -2.6352 29 1 -2.6704 -7.1388 -4.7795 30 1 -1.2541 -8.0904 -4.2290 31 1 -4.2188 -9.6066 -2.1691 32 1 -1.2626 -3.4780 -2.2327 33 1 -0.1420 -1.4082 -1.5772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116398849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:04 Heat of formation + Delta-G solvation = -22.040146 kcal Electronic energy + Delta-G solvation = -21694.144099 eV Core-core repulsion = 18107.970446 eV Total energy + Delta-G solvation = -3586.173653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.33737 -39.33932 -38.59318 -37.25366 -36.25392 -34.98662 -34.01714 -31.94342 -30.10590 -29.58324 -27.70207 -26.01033 -23.28069 -22.47207 -21.55798 -21.01862 -19.95498 -18.66356 -17.77427 -17.61651 -17.05339 -16.67576 -16.18025 -15.70236 -15.55961 -14.48287 -14.37664 -14.25864 -14.12502 -13.86966 -13.54255 -13.33856 -12.92413 -12.26081 -12.08668 -11.53260 -11.38366 -11.33926 -11.06755 -10.78484 -10.58656 -10.55333 -10.18457 -9.88142 -9.69175 -9.47450 -9.32751 -8.94448 -7.86710 -7.70071 -7.15692 -4.73342 1.29820 1.39335 2.03172 2.60924 2.83821 2.88962 2.90186 2.91823 2.92496 3.62492 3.66537 3.81675 4.21434 4.41461 4.72645 4.80672 5.30232 5.43452 5.69696 5.81087 5.87596 6.18297 6.65324 6.70153 6.72469 6.82759 6.92626 6.98514 7.16505 7.29067 7.42320 7.59092 7.73058 7.83972 7.94235 8.02564 8.26687 8.50175 8.61272 8.85614 9.75836 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.038865 B = 0.003178 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.265079 B = 8809.565242 C = 8981.764379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.435 4.435 8 H 0.087 0.913 9 C 0.130 3.870 10 C -0.237 4.237 11 C -0.015 4.015 12 C -0.280 4.280 13 C 0.576 3.424 14 O -0.551 6.551 15 N -0.493 5.493 16 N -0.425 5.425 17 C 0.065 3.935 18 C 0.536 3.464 19 O -0.473 6.473 20 N -0.673 5.673 21 C 0.706 3.294 22 O -0.523 6.523 23 C -0.061 4.061 24 C -0.176 4.176 25 H 0.289 0.711 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.420 0.580 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.434 0.566 32 H 0.090 0.910 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -5.083 -8.088 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.126 3.874 10 C -0.256 4.256 11 C -0.034 4.034 12 C -0.286 4.286 13 C 0.372 3.628 14 O -0.428 6.428 15 N -0.246 5.246 16 N -0.253 5.253 17 C -0.061 4.061 18 C 0.321 3.679 19 O -0.343 6.343 20 N -0.345 5.345 21 C 0.406 3.594 22 O -0.394 6.394 23 C -0.080 4.080 24 C -0.195 4.195 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.264 0.736 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.277 0.723 32 H 0.108 0.892 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.835 -5.803 -7.595 10.712 hybrid contribution -0.233 0.864 0.037 0.895 sum -5.069 -4.940 -7.558 10.354 Atomic orbital electron populations 1.69730 1.07968 1.30366 1.30728 1.26144 0.94852 1.02068 0.91845 0.86165 0.80592 0.79583 0.79744 1.18823 1.19922 1.18188 1.19935 0.98531 0.91157 1.36613 0.89450 1.17817 0.90298 0.92222 0.87037 1.20710 1.04673 0.92445 1.07801 1.20329 0.92494 0.97399 0.93182 1.18512 1.04861 0.89447 1.15795 1.19227 0.77173 0.90607 0.75817 1.90682 1.65440 1.31348 1.55321 1.45051 1.28981 0.96619 1.53943 1.45609 1.47216 1.20408 1.12018 1.22769 1.03308 0.92765 0.87288 1.20643 0.79419 0.86388 0.81418 1.90860 1.58610 1.38962 1.45820 1.44277 1.48325 1.26707 1.15183 1.15801 0.79024 0.79850 0.84725 1.91057 1.61961 1.72201 1.14158 1.20448 0.97274 0.92481 0.97826 1.20978 0.99835 0.96914 1.01796 0.89984 0.88088 0.87908 0.73631 0.85423 0.85523 0.72296 0.89209 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.41 10.95 55.56 0.61 -16.80 16 2 C 0.07 1.62 5.14 -17.31 -0.09 1.53 16 3 Si 0.92 16.37 29.60 -169.99 -5.03 11.34 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 7 C -0.44 -10.24 9.04 -37.74 -0.34 -10.58 16 8 H 0.09 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.13 3.11 5.58 -106.80 -0.60 2.52 16 10 C -0.24 -5.42 9.73 -39.27 -0.38 -5.80 16 11 C -0.01 -0.33 9.52 -39.61 -0.38 -0.70 16 12 C -0.28 -5.99 5.89 -104.73 -0.62 -6.61 16 13 C 0.58 11.73 7.86 -12.42 -0.10 11.63 16 14 O -0.55 -12.88 16.59 5.29 0.09 -12.79 16 15 N -0.49 -7.87 6.30 30.48 0.19 -7.68 16 16 N -0.43 -5.98 3.41 -65.73 -0.22 -6.20 16 17 C 0.06 0.60 7.88 -4.31 -0.03 0.57 16 18 C 0.54 5.49 8.81 -10.55 -0.09 5.39 16 19 O -0.47 -5.77 18.02 5.60 0.10 -5.67 16 20 N -0.67 -7.30 5.70 -15.79 -0.09 -7.39 16 21 C 0.71 10.75 8.71 -88.03 -0.77 9.99 16 22 O -0.52 -10.32 17.99 5.33 0.10 -10.23 16 23 C -0.06 -1.24 9.47 -39.61 -0.38 -1.62 16 24 C -0.18 -4.02 8.64 -39.27 -0.34 -4.36 16 25 H 0.29 5.89 8.29 -40.82 -0.34 5.55 16 26 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 27 H 0.10 2.23 7.63 -52.49 -0.40 1.83 16 28 H 0.42 5.54 6.83 -182.60 -1.25 4.29 16 29 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.43 3.65 8.96 -40.82 -0.37 3.29 16 32 H 0.09 1.47 6.37 -52.48 -0.33 1.14 16 33 H 0.12 2.81 6.16 -52.48 -0.32 2.49 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -31.60 302.65 -7.30 -38.89 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.49 Total: 10.01 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -4.11 Total: 1.96 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.49 Total: -38.07 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: 0.28 Total: -28.69 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -5.03 Total: 11.34 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.60 -7.30 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116398849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.852 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds