Wall clock time and date at job start Fri Apr 10 2020 14:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86808 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47067 * 270.00332 * 3 2 1 5 5 H 1.48501 * 109.47006 * 29.99902 * 3 2 1 6 6 H 1.48495 * 109.46967 * 150.00130 * 3 2 1 7 7 C 1.40227 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00457 * 197.87050 * 7 2 1 9 9 C 1.41114 * 119.99416 * 17.86468 * 7 2 1 10 10 C 1.40895 * 120.09884 * 204.63841 * 9 7 2 11 11 C 1.36313 * 119.88946 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10636 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89218 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00144 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99637 * 180.02562 * 13 12 11 16 16 N 1.40101 * 119.99739 * 180.02562 * 15 13 12 17 17 C 1.47315 * 126.68709 * 254.71434 * 16 15 13 18 18 C 1.51590 * 103.58882 * 179.97438 * 17 16 15 19 19 O 1.21232 * 127.15253 * 180.02562 * 18 17 16 20 20 N 1.34769 * 105.68417 * 0.33485 * 18 17 16 21 21 C 1.33789 * 111.64406 * 359.77736 * 20 18 17 22 22 O 1.21539 * 123.77124 * 180.02562 * 21 20 18 23 23 C 1.40007 * 120.20944 * 0.26342 * 12 11 10 24 24 C 1.36316 * 120.10852 * 359.43315 * 23 12 11 25 25 H 0.96998 * 120.00197 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.05254 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.94551 * 180.02562 * 11 10 9 28 28 H 0.96999 * 119.99866 * 0.02562 * 15 13 12 29 29 H 1.09005 * 110.59957 * 298.55795 * 17 16 15 30 30 H 1.08996 * 110.60257 * 61.51286 * 17 16 15 31 31 H 0.96993 * 124.17478 * 179.82188 * 20 18 17 32 32 H 1.08004 * 119.94565 * 179.70323 * 23 12 11 33 33 H 1.08004 * 120.05722 * 180.28306 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0076 -1.2143 -0.0005 8 1 3.0486 -1.2370 0.2864 9 6 1.3531 -2.4068 -0.3760 10 6 1.8267 -3.6495 0.0893 11 6 1.1915 -4.7987 -0.2765 12 6 0.0704 -4.7456 -1.1136 13 6 -0.6137 -5.9934 -1.5072 14 8 -0.2036 -7.0647 -1.1042 15 7 -1.6928 -5.9448 -2.3134 16 7 -2.3422 -7.1288 -2.6865 17 6 -2.2771 -7.7919 -4.0004 18 6 -3.1612 -9.0112 -3.8281 19 8 -3.4077 -9.8600 -4.6579 20 7 -3.6216 -8.9516 -2.5629 21 6 -3.1523 -7.8780 -1.9171 22 8 -3.4270 -7.6097 -0.7639 23 6 -0.4003 -3.5136 -1.5833 24 6 0.2246 -2.3585 -1.2180 25 1 -0.4850 0.8400 -0.0004 26 1 2.6921 -3.6914 0.7340 27 1 1.5536 -5.7517 0.0800 28 1 -2.0196 -5.0901 -2.6352 29 1 -2.6704 -7.1388 -4.7795 30 1 -1.2541 -8.0904 -4.2290 31 1 -4.2188 -9.6066 -2.1691 32 1 -1.2626 -3.4780 -2.2327 33 1 -0.1420 -1.4082 -1.5772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116398849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:03 Heat of formation + Delta-G solvation = -45.076520 kcal Electronic energy + Delta-G solvation = -21695.143031 eV Core-core repulsion = 18107.970446 eV Total energy + Delta-G solvation = -3587.172585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.37985 -40.82441 -39.77509 -38.90731 -37.48484 -36.24603 -35.70259 -33.26048 -31.67016 -31.30293 -28.79249 -27.61663 -24.69968 -23.47006 -23.01335 -22.66092 -21.43644 -19.80423 -19.36575 -18.98468 -18.26667 -17.84088 -17.29970 -17.16131 -16.82439 -16.02041 -15.76111 -15.60576 -15.42398 -15.18916 -15.08422 -14.54907 -14.32048 -13.93007 -13.73438 -13.25585 -12.86384 -12.66246 -12.52724 -12.39239 -11.80395 -11.65607 -11.61171 -11.38344 -11.25627 -11.10950 -10.84782 -10.24569 -9.58883 -9.45467 -8.80653 -6.49853 0.14621 0.36057 0.46855 1.16344 1.40204 1.44212 1.55507 1.67990 1.79351 2.02559 2.17763 2.72983 2.90511 2.99509 3.67457 3.93769 4.09495 4.17132 4.30551 4.43082 4.47745 4.93521 4.96565 5.02225 5.13053 5.27600 5.56202 5.58845 5.72272 5.79036 5.89333 5.98629 6.20490 6.22580 6.35444 6.53380 6.76261 6.81183 6.87128 7.39141 8.14035 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.038865 B = 0.003178 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.265079 B = 8809.565242 C = 8981.764379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.104 3.896 10 C -0.251 4.251 11 C -0.027 4.027 12 C -0.287 4.287 13 C 0.579 3.421 14 O -0.586 6.586 15 N -0.480 5.480 16 N -0.428 5.428 17 C 0.068 3.932 18 C 0.548 3.452 19 O -0.486 6.486 20 N -0.659 5.659 21 C 0.703 3.297 22 O -0.576 6.576 23 C -0.048 4.048 24 C -0.196 4.196 25 H 0.298 0.702 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.436 0.564 29 H 0.173 0.827 30 H 0.141 0.859 31 H 0.444 0.556 32 H 0.132 0.868 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -4.609 -9.922 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.493 4.493 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.270 4.270 11 C -0.046 4.046 12 C -0.293 4.293 13 C 0.374 3.626 14 O -0.466 6.466 15 N -0.232 5.232 16 N -0.256 5.256 17 C -0.055 4.055 18 C 0.335 3.665 19 O -0.357 6.357 20 N -0.331 5.331 21 C 0.403 3.597 22 O -0.451 6.451 23 C -0.067 4.067 24 C -0.215 4.215 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.283 0.717 29 H 0.191 0.809 30 H 0.159 0.841 31 H 0.289 0.711 32 H 0.150 0.850 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.560 -5.347 -9.498 12.236 hybrid contribution -0.096 0.578 0.558 0.809 sum -5.656 -4.769 -8.940 11.605 Atomic orbital electron populations 1.69745 1.09192 1.31809 1.30813 1.26912 0.95533 1.04791 0.90839 0.85107 0.79048 0.75232 0.79907 1.18134 1.19126 1.18241 1.20183 0.98844 0.92200 1.38117 0.89521 1.18161 0.91244 0.92770 0.87779 1.20834 1.05224 0.92603 1.08386 1.20468 0.93219 0.97187 0.93747 1.18738 1.04614 0.90644 1.15285 1.18977 0.77995 0.89511 0.76087 1.90665 1.66836 1.32307 1.56774 1.44527 1.27662 0.98234 1.52815 1.45812 1.46258 1.19913 1.13577 1.23132 1.04215 0.92559 0.85634 1.20650 0.78952 0.86255 0.80626 1.90880 1.59232 1.39591 1.45986 1.44116 1.48075 1.25652 1.15277 1.16029 0.78957 0.80470 0.84225 1.91025 1.63929 1.73585 1.16516 1.20747 0.97709 0.91090 0.97178 1.21032 1.00347 0.97582 1.02576 0.89016 0.87692 0.87968 0.71719 0.80943 0.84108 0.71084 0.85021 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.98 10.95 21.87 0.24 -35.74 16 2 C 0.04 1.72 5.14 85.35 0.44 2.16 16 3 Si 0.99 33.00 29.60 68.60 2.03 35.03 16 4 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 5 H -0.27 -8.52 7.11 99.48 0.71 -7.82 16 6 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.47 -22.36 9.04 23.46 0.21 -22.14 16 8 H 0.09 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.10 5.09 5.58 -21.28 -0.12 4.97 16 10 C -0.25 -11.82 9.73 22.47 0.22 -11.60 16 11 C -0.03 -1.22 9.52 22.25 0.21 -1.01 16 12 C -0.29 -12.14 5.89 -19.93 -0.12 -12.25 16 13 C 0.58 22.97 7.86 86.73 0.68 23.65 16 14 O -0.59 -27.19 16.59 -3.98 -0.07 -27.26 16 15 N -0.48 -14.20 6.30 -175.73 -1.11 -15.30 16 16 N -0.43 -10.96 3.41 -480.30 -1.64 -12.60 16 17 C 0.07 1.01 7.88 85.76 0.68 1.69 16 18 C 0.55 9.62 8.81 87.94 0.77 10.40 16 19 O -0.49 -10.51 18.02 -2.88 -0.05 -10.56 16 20 N -0.66 -13.02 5.70 -441.12 -2.52 -15.54 16 21 C 0.70 20.39 8.71 179.44 1.56 21.95 16 22 O -0.58 -22.60 17.99 -3.84 -0.07 -22.67 16 23 C -0.05 -1.91 9.47 22.25 0.21 -1.70 16 24 C -0.20 -8.96 8.64 22.47 0.19 -8.77 16 25 H 0.30 12.01 8.29 -92.71 -0.77 11.24 16 26 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.10 4.57 7.63 -2.91 -0.02 4.55 16 28 H 0.44 10.11 6.83 -213.32 -1.46 8.66 16 29 H 0.17 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.44 6.81 8.96 -92.71 -0.83 5.98 16 32 H 0.13 3.94 6.37 -2.91 -0.02 3.92 16 33 H 0.12 5.41 6.16 -2.91 -0.02 5.40 16 Total: -1.00 -69.92 302.65 0.69 -69.23 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -1.08 Total: 28.05 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.95 Total: 7.35 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -5.02 Total: -79.17 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.19 Total: -60.49 kcal Atomic # 14 Polarization: 33.00 SS G_CDS: 2.03 Total: 35.03 kcal Total: -69.92 0.69 -69.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116398849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.156 kcal (2) G-P(sol) polarization free energy of solvation -69.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds