Wall clock time and date at job start Fri Apr 10 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47338 * 120.00456 * 2 1 3 5 5 H 1.09003 * 109.46972 * 181.58116 * 4 2 1 6 6 N 1.46498 * 109.46684 * 301.57634 * 4 2 1 7 7 S 1.65601 * 119.99911 * 217.25768 * 6 4 2 8 8 O 1.42101 * 104.27979 * 178.61524 * 7 6 4 9 9 O 1.42107 * 104.27729 * 306.47160 * 7 6 4 10 10 C 1.81397 * 104.44892 * 62.54103 * 7 6 4 11 11 C 1.53000 * 117.50295 * 249.76751 * 10 7 6 12 12 C 1.53001 * 117.49878 * 181.10529 * 10 7 6 13 13 C 1.50695 * 109.47122 * 61.57323 * 4 2 1 14 14 O 1.21290 * 120.00617 * 258.12454 * 13 4 2 15 15 N 1.34781 * 119.99531 * 78.12825 * 13 4 2 16 16 C 1.37104 * 119.99761 * 174.89564 * 15 13 4 17 17 H 1.08001 * 120.00084 * 0.02562 * 16 15 13 18 18 C 1.38943 * 119.99796 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00036 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00374 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47153 * 89.99551 * 20 18 16 22 22 H 1.48496 * 109.47066 * 209.99951 * 20 18 16 23 23 H 1.48500 * 109.46866 * 329.99750 * 20 18 16 24 24 H 1.09003 * 109.46665 * 305.28295 * 1 2 3 25 25 H 1.08998 * 109.47151 * 65.27501 * 1 2 3 26 26 H 1.08996 * 109.47132 * 185.28471 * 1 2 3 27 27 H 1.09001 * 109.46780 * 240.00626 * 2 1 3 28 28 H 1.08997 * 109.46897 * 184.15683 * 3 2 1 29 29 H 1.09001 * 109.46931 * 304.15978 * 3 2 1 30 30 H 1.09001 * 109.46739 * 64.15900 * 3 2 1 31 31 H 0.97004 * 120.00726 * 37.25881 * 6 4 2 32 32 H 1.09001 * 115.55218 * 35.44052 * 10 7 6 33 33 H 1.09001 * 117.49365 * 0.02562 * 11 10 7 34 34 H 1.08993 * 117.50039 * 145.01509 * 11 10 7 35 35 H 1.08996 * 117.50012 * 214.97759 * 12 10 7 36 36 H 1.08998 * 117.49928 * 0.02562 * 12 10 7 37 37 H 0.96999 * 120.00512 * 354.90114 * 15 13 4 38 38 H 0.96998 * 120.00452 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1298 -0.6968 1.2634 6 7 1.5210 -0.0531 2.4450 7 16 2.4715 0.0868 3.7938 8 8 1.6648 0.8035 4.7184 9 8 2.8920 -1.2431 4.0657 10 6 3.8758 1.1007 3.2547 11 6 5.2389 0.4155 3.1396 12 6 4.9693 1.3968 4.2831 13 6 1.5699 -2.1529 1.2297 14 8 0.6287 -2.4916 1.9157 15 7 2.1954 -3.0571 0.4500 16 6 1.8366 -4.3789 0.5101 17 1 1.0525 -4.6957 1.1819 18 6 2.4810 -5.3109 -0.2940 19 7 2.1368 -6.5779 -0.2369 20 14 3.8368 -4.7630 -1.4565 21 1 5.1452 -4.8302 -0.7576 22 1 3.8626 -5.6561 -2.6426 23 1 3.5800 -3.3672 -1.8934 24 1 -0.3633 0.5936 0.8389 25 1 -0.3633 0.4298 -0.9334 26 1 -0.3633 -1.0233 0.0946 27 1 1.8933 -0.5138 -0.8901 28 1 3.1275 1.4434 -0.0745 29 1 1.6171 1.9774 -0.8504 30 1 1.7389 1.9343 0.9249 31 1 0.6205 0.3075 2.4469 32 1 3.6418 1.8807 2.5302 33 1 5.2918 -0.6446 3.3873 34 1 5.9018 0.7449 2.3395 35 1 5.4550 2.3714 4.2347 36 1 4.8451 0.9821 5.2834 37 1 2.8994 -2.7726 -0.1535 38 1 2.5864 -7.2285 -0.7985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590442959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:42 Heat of formation + Delta-G solvation = -81.066914 kcal Electronic energy + Delta-G solvation = -22591.183702 eV Core-core repulsion = 19176.008841 eV Total energy + Delta-G solvation = -3415.174861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.19544 -37.34153 -36.77990 -36.25234 -35.75697 -33.96434 -32.40081 -31.61149 -27.31927 -27.05637 -24.19488 -23.67820 -22.87407 -20.58138 -19.47920 -19.09007 -18.48112 -17.91139 -16.94954 -16.13024 -15.78372 -15.45057 -14.87088 -14.69953 -14.49564 -14.03655 -13.65492 -13.53432 -12.91252 -12.66372 -12.40879 -12.24986 -12.10988 -11.96731 -11.92636 -11.81066 -11.72255 -11.32776 -11.29778 -11.23253 -11.02657 -10.85361 -10.80806 -10.59430 -10.56322 -9.99632 -9.77505 -9.54131 -8.28663 -8.14944 -6.28020 -3.78811 0.35404 2.71833 3.01210 3.04184 3.07154 3.15553 3.67209 3.88396 4.11710 4.15557 4.34858 4.52560 4.56601 4.80889 4.85991 4.89283 5.05977 5.18568 5.28718 5.29880 5.35258 5.49772 5.57977 5.66841 5.67896 5.70843 5.88739 5.92561 6.03314 6.14750 6.32567 6.53880 7.15704 7.58915 8.17019 8.61509 8.97926 9.44448 9.83079 10.85223 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.005988 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.382790 B = 4674.898051 C = 4956.196534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.147 3.853 5 H 0.092 0.908 6 N -1.086 6.086 7 S 2.634 3.366 8 O -0.961 6.961 9 O -0.934 6.934 10 C -0.693 4.693 11 C -0.128 4.128 12 C -0.127 4.127 13 C 0.445 3.555 14 O -0.558 6.558 15 N -0.587 5.587 16 C -0.301 4.301 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.876 3.124 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.419 0.581 32 H 0.159 0.841 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.369 0.631 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.060 19.319 0.296 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.206 4.206 4 C 0.035 3.965 5 H 0.110 0.890 6 N -0.845 5.845 7 S 2.723 3.277 8 O -0.951 6.951 9 O -0.924 6.924 10 C -0.800 4.800 11 C -0.166 4.166 12 C -0.166 4.166 13 C 0.229 3.771 14 O -0.439 6.439 15 N -0.227 5.227 16 C -0.429 4.429 17 H 0.138 0.862 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.703 3.297 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.177 0.823 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.202 0.798 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.463 18.413 1.554 19.576 hybrid contribution 0.988 0.840 -1.650 2.099 sum 7.451 19.253 -0.096 20.645 Atomic orbital electron populations 1.21839 0.94084 1.03672 1.01157 1.21350 0.97591 0.96151 0.96608 1.21898 1.00783 0.95772 1.02136 1.20668 0.97957 0.92143 0.85767 0.88997 1.55111 1.27823 1.71702 1.29910 1.04264 0.75066 0.75156 0.73184 1.93577 1.65724 1.75848 1.59937 1.93683 1.83281 1.32702 1.82701 1.32751 1.11650 1.19862 1.15713 1.22928 0.92520 0.99868 1.01250 1.22733 0.97325 1.02402 0.94133 1.19942 0.86526 0.86270 0.84406 1.90560 1.29024 1.79816 1.44474 1.42196 1.34702 1.08270 1.37501 1.19442 1.20324 0.80094 1.23089 0.86219 1.25028 0.98104 0.95139 0.97881 1.69620 1.41696 1.00996 1.39786 0.86722 0.82856 0.78707 0.81429 1.19527 1.20188 1.19465 0.92657 0.92621 0.90882 0.89561 0.92640 0.92200 0.92354 0.74415 0.82278 0.86099 0.86931 0.86878 0.87634 0.79826 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.72 37.16 0.32 -1.69 16 2 C -0.10 -1.22 2.77 -90.61 -0.25 -1.47 16 3 C -0.15 -1.36 9.11 37.16 0.34 -1.02 16 4 C 0.15 2.31 2.23 -69.09 -0.15 2.16 16 5 H 0.09 1.21 7.60 -51.93 -0.39 0.82 16 6 N -1.09 -16.28 4.10 -5.88 -0.02 -16.31 16 7 S 2.63 39.74 5.74 -107.50 -0.62 39.13 16 8 O -0.96 -16.60 18.08 -57.54 -1.04 -17.64 16 9 O -0.93 -18.36 17.16 -57.54 -0.99 -19.35 16 10 C -0.69 -6.92 6.09 -26.73 -0.16 -7.09 16 11 C -0.13 -1.16 10.17 -26.69 -0.27 -1.44 16 12 C -0.13 -1.08 10.30 -26.69 -0.27 -1.35 16 13 C 0.44 9.98 5.91 -10.99 -0.06 9.92 16 14 O -0.56 -14.95 15.78 5.55 0.09 -14.86 16 15 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 16 C -0.30 -8.53 10.16 -14.93 -0.15 -8.69 16 17 H 0.12 3.91 7.40 -52.49 -0.39 3.52 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.82 13.96 55.50 0.77 -25.05 16 20 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 24 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.25 6.84 -51.93 -0.36 0.89 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 7.53 -51.93 -0.39 0.10 16 31 H 0.42 5.83 7.03 -34.47 -0.24 5.59 16 32 H 0.16 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.12 1.25 7.66 -51.93 -0.40 0.85 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.37 7.54 5.77 -40.82 -0.24 7.30 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -37.27 329.30 -7.68 -44.95 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.30 Total: 13.34 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.76 Total: -9.63 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.69 Total: -55.30 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -1.94 Total: -51.85 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Atomic # 16 Polarization: 39.74 SS G_CDS: -0.62 Total: 39.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.27 -7.68 -44.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590442959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.119 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds