Wall clock time and date at job start Fri Apr 10 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47338 * 120.00456 * 2 1 3 5 5 H 1.09003 * 109.46972 * 181.58116 * 4 2 1 6 6 N 1.46498 * 109.46684 * 301.57634 * 4 2 1 7 7 S 1.65601 * 119.99911 * 217.25768 * 6 4 2 8 8 O 1.42101 * 104.27979 * 178.61524 * 7 6 4 9 9 O 1.42107 * 104.27729 * 306.47160 * 7 6 4 10 10 C 1.81397 * 104.44892 * 62.54103 * 7 6 4 11 11 C 1.53000 * 117.50295 * 249.76751 * 10 7 6 12 12 C 1.53001 * 117.49878 * 181.10529 * 10 7 6 13 13 C 1.50695 * 109.47122 * 61.57323 * 4 2 1 14 14 O 1.21290 * 120.00617 * 258.12454 * 13 4 2 15 15 N 1.34781 * 119.99531 * 78.12825 * 13 4 2 16 16 C 1.37104 * 119.99761 * 174.89564 * 15 13 4 17 17 H 1.08001 * 120.00084 * 0.02562 * 16 15 13 18 18 C 1.38943 * 119.99796 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00036 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00374 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47153 * 89.99551 * 20 18 16 22 22 H 1.48496 * 109.47066 * 209.99951 * 20 18 16 23 23 H 1.48500 * 109.46866 * 329.99750 * 20 18 16 24 24 H 1.09003 * 109.46665 * 305.28295 * 1 2 3 25 25 H 1.08998 * 109.47151 * 65.27501 * 1 2 3 26 26 H 1.08996 * 109.47132 * 185.28471 * 1 2 3 27 27 H 1.09001 * 109.46780 * 240.00626 * 2 1 3 28 28 H 1.08997 * 109.46897 * 184.15683 * 3 2 1 29 29 H 1.09001 * 109.46931 * 304.15978 * 3 2 1 30 30 H 1.09001 * 109.46739 * 64.15900 * 3 2 1 31 31 H 0.97004 * 120.00726 * 37.25881 * 6 4 2 32 32 H 1.09001 * 115.55218 * 35.44052 * 10 7 6 33 33 H 1.09001 * 117.49365 * 0.02562 * 11 10 7 34 34 H 1.08993 * 117.50039 * 145.01509 * 11 10 7 35 35 H 1.08996 * 117.50012 * 214.97759 * 12 10 7 36 36 H 1.08998 * 117.49928 * 0.02562 * 12 10 7 37 37 H 0.96999 * 120.00512 * 354.90114 * 15 13 4 38 38 H 0.96998 * 120.00452 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1298 -0.6968 1.2634 6 7 1.5210 -0.0531 2.4450 7 16 2.4715 0.0868 3.7938 8 8 1.6648 0.8035 4.7184 9 8 2.8920 -1.2431 4.0657 10 6 3.8758 1.1007 3.2547 11 6 5.2389 0.4155 3.1396 12 6 4.9693 1.3968 4.2831 13 6 1.5699 -2.1529 1.2297 14 8 0.6287 -2.4916 1.9157 15 7 2.1954 -3.0571 0.4500 16 6 1.8366 -4.3789 0.5101 17 1 1.0525 -4.6957 1.1819 18 6 2.4810 -5.3109 -0.2940 19 7 2.1368 -6.5779 -0.2369 20 14 3.8368 -4.7630 -1.4565 21 1 5.1452 -4.8302 -0.7576 22 1 3.8626 -5.6561 -2.6426 23 1 3.5800 -3.3672 -1.8934 24 1 -0.3633 0.5936 0.8389 25 1 -0.3633 0.4298 -0.9334 26 1 -0.3633 -1.0233 0.0946 27 1 1.8933 -0.5138 -0.8901 28 1 3.1275 1.4434 -0.0745 29 1 1.6171 1.9774 -0.8504 30 1 1.7389 1.9343 0.9249 31 1 0.6205 0.3075 2.4469 32 1 3.6418 1.8807 2.5302 33 1 5.2918 -0.6446 3.3873 34 1 5.9018 0.7449 2.3395 35 1 5.4550 2.3714 4.2347 36 1 4.8451 0.9821 5.2834 37 1 2.8994 -2.7726 -0.1535 38 1 2.5864 -7.2285 -0.7985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590442959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:42 Heat of formation + Delta-G solvation = -113.144364 kcal Electronic energy + Delta-G solvation = -22592.574685 eV Core-core repulsion = 19176.008841 eV Total energy + Delta-G solvation = -3416.565844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81339 -38.36330 -37.80836 -37.65758 -37.06614 -35.97123 -33.76931 -33.44105 -28.77420 -28.00638 -26.02247 -24.54570 -23.50186 -21.92748 -20.99785 -20.60925 -20.09297 -19.01847 -18.19836 -17.55800 -17.17855 -16.84117 -16.20505 -15.97373 -15.66675 -15.35365 -15.12434 -14.69272 -14.53611 -14.29139 -13.95155 -13.38970 -13.32199 -13.19525 -13.09483 -12.95359 -12.84955 -12.55543 -12.40184 -12.10885 -12.08985 -12.06937 -11.98003 -11.83162 -11.69354 -11.56855 -11.45779 -11.14032 -10.22956 -10.00349 -8.39144 -6.00299 -0.77520 1.29618 1.37621 1.46085 1.61555 1.95294 2.21881 2.25628 2.81868 2.92437 3.14391 3.26597 3.56260 3.75940 3.78926 3.83738 3.96364 4.01833 4.21561 4.36899 4.61580 4.65633 4.70458 4.76933 4.88636 4.92737 5.02388 5.07296 5.12201 5.27218 5.45052 5.52625 5.56655 5.94526 6.00676 6.59899 6.89804 7.39925 7.97409 8.79009 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.005988 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.382790 B = 4674.898051 C = 4956.196534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.154 3.846 5 H 0.129 0.871 6 N -1.087 6.087 7 S 2.620 3.380 8 O -0.995 6.995 9 O -0.998 6.998 10 C -0.670 4.670 11 C -0.128 4.128 12 C -0.124 4.124 13 C 0.440 3.560 14 O -0.614 6.614 15 N -0.588 5.588 16 C -0.328 4.328 17 H 0.049 0.951 18 C -0.018 4.018 19 N -0.937 5.937 20 Si 0.962 3.038 21 H -0.254 1.254 22 H -0.274 1.274 23 H -0.222 1.222 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.022 0.978 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.421 0.579 32 H 0.200 0.800 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.099 0.901 37 H 0.390 0.610 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.847 23.863 -2.248 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.202 4.202 4 C 0.042 3.958 5 H 0.147 0.853 6 N -0.845 5.845 7 S 2.718 3.282 8 O -0.985 6.985 9 O -0.988 6.988 10 C -0.783 4.783 11 C -0.166 4.166 12 C -0.162 4.162 13 C 0.226 3.774 14 O -0.498 6.498 15 N -0.230 5.230 16 C -0.457 4.457 17 H 0.067 0.933 18 C -0.216 4.216 19 N -0.578 5.578 20 Si 0.780 3.220 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.145 1.145 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.041 0.959 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.258 0.742 32 H 0.218 0.782 33 H 0.119 0.881 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.118 0.882 37 H 0.226 0.774 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.184 22.953 -0.961 25.129 hybrid contribution -0.271 -0.588 -0.715 0.964 sum 9.914 22.365 -1.676 24.522 Atomic orbital electron populations 1.21863 0.95427 1.00820 1.02906 1.21425 0.96516 0.98749 0.94608 1.21910 1.02527 0.92329 1.03405 1.20776 0.99907 0.87300 0.87787 0.85335 1.55046 1.28558 1.71506 1.29439 1.04253 0.76225 0.74674 0.73060 1.93525 1.67737 1.75857 1.61387 1.93614 1.84268 1.37028 1.83849 1.32235 1.08435 1.19699 1.17930 1.23181 0.91561 0.99166 1.02720 1.23109 0.95382 1.04079 0.93659 1.21472 0.84895 0.88994 0.81995 1.90530 1.31437 1.81597 1.46206 1.41998 1.35655 1.06590 1.38736 1.18977 1.20123 0.83150 1.23443 0.93318 1.26188 1.01212 0.94567 0.99651 1.69821 1.43739 1.02964 1.41255 0.85425 0.78014 0.80710 0.77813 1.17876 1.19911 1.14467 0.91810 0.90147 0.95885 0.88811 0.89943 0.90535 0.91562 0.74242 0.78237 0.88135 0.83154 0.83172 0.88249 0.77430 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.72 71.98 0.63 -3.31 16 2 C -0.09 -2.04 2.77 -10.79 -0.03 -2.07 16 3 C -0.14 -1.79 9.11 71.98 0.66 -1.13 16 4 C 0.15 4.61 2.23 44.24 0.10 4.71 16 5 H 0.13 2.90 7.60 -2.39 -0.02 2.88 16 6 N -1.09 -31.90 4.10 -172.53 -0.71 -32.60 16 7 S 2.62 78.05 5.74 -56.49 -0.32 77.72 16 8 O -0.99 -34.85 18.08 -127.65 -2.31 -37.16 16 9 O -1.00 -40.92 17.16 -127.65 -2.19 -43.11 16 10 C -0.67 -10.39 6.09 30.59 0.19 -10.20 16 11 C -0.13 -1.72 10.17 30.62 0.31 -1.41 16 12 C -0.12 -1.52 10.30 30.62 0.32 -1.20 16 13 C 0.44 20.42 5.91 87.65 0.52 20.94 16 14 O -0.61 -35.54 15.78 -3.06 -0.05 -35.59 16 15 N -0.59 -28.31 5.09 -306.99 -1.56 -29.87 16 16 C -0.33 -19.80 10.16 84.04 0.85 -18.94 16 17 H 0.05 3.54 7.40 -2.91 -0.02 3.52 16 18 C -0.02 -1.02 5.50 84.92 0.47 -0.56 16 19 N -0.94 -57.74 13.96 21.66 0.30 -57.44 16 20 Si 0.96 38.35 27.74 68.60 1.90 40.26 16 21 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.22 -7.10 6.52 99.48 0.65 -6.45 16 24 H 0.06 1.49 6.70 -2.39 -0.02 1.47 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.02 0.80 6.84 -2.39 -0.02 0.79 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.74 7.53 -2.39 -0.02 0.72 16 31 H 0.42 11.75 7.03 -96.74 -0.68 11.07 16 32 H 0.20 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.84 7.66 -2.39 -0.02 1.82 16 34 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.39 15.10 5.77 -92.71 -0.53 14.56 16 38 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -93.96 329.30 -1.12 -95.07 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.19 Total: 35.90 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.00 Total: -13.18 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -1.97 Total: -119.92 kcal Atomic # 8 Polarization: -111.31 SS G_CDS: -4.55 Total: -115.86 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.26 kcal Atomic # 16 Polarization: 78.05 SS G_CDS: -0.32 Total: 77.72 kcal Total: -93.96 -1.12 -95.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590442959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.072 kcal (2) G-P(sol) polarization free energy of solvation -93.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds