Wall clock time and date at job start Fri Apr 10 2020 14:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47457 * 2 1 4 4 C 1.50697 * 109.47247 * 240.00131 * 2 1 3 5 5 H 1.08001 * 120.00061 * 240.00566 * 4 2 1 6 6 C 1.37872 * 120.00045 * 59.99537 * 4 2 1 7 7 N 1.31519 * 119.99878 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00345 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47415 * 90.00147 * 8 6 4 10 10 H 1.48503 * 109.47254 * 210.00803 * 8 6 4 11 11 H 1.48505 * 109.46994 * 330.00026 * 8 6 4 12 12 C 1.53003 * 109.47073 * 120.00071 * 2 1 3 13 13 N 1.46497 * 109.47523 * 299.99861 * 12 2 1 14 14 C 1.34774 * 120.00289 * 180.02562 * 13 12 2 15 15 O 1.21276 * 120.00029 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99897 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.76033 * 319.26709 * 16 14 13 18 18 C 1.54410 * 109.78566 * 79.82995 * 16 14 13 19 19 C 1.54923 * 105.75185 * 165.17209 * 18 16 14 20 20 S 1.83175 * 102.88028 * 335.05622 * 19 18 16 21 21 O 1.42101 * 111.27745 * 110.93668 * 20 19 18 22 22 O 1.42097 * 111.27655 * 250.28766 * 20 19 18 23 23 N 1.47994 * 109.76545 * 198.54281 * 16 14 13 24 24 H 1.09003 * 109.47057 * 299.99897 * 1 2 3 25 25 H 1.08992 * 109.47338 * 59.99842 * 1 2 3 26 26 H 1.09003 * 109.47529 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47352 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.46976 * 300.00380 * 3 2 1 29 29 H 1.09003 * 109.46903 * 60.00008 * 3 2 1 30 30 H 0.97000 * 119.99997 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46813 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47026 * 60.00365 * 12 2 1 33 33 H 0.97004 * 119.99195 * 359.97438 * 13 12 2 34 34 H 1.08998 * 110.12431 * 46.16675 * 18 16 14 35 35 H 1.09002 * 110.34416 * 284.28863 * 18 16 14 36 36 H 1.09002 * 110.76261 * 216.65726 * 19 18 16 37 37 H 1.09000 * 110.76023 * 93.45317 * 19 18 16 38 38 H 0.97002 * 127.75754 * 16.24855 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0308 2.4455 14 6 1.8777 -0.4909 3.6695 15 8 2.5749 -1.4770 3.7808 16 6 1.3749 0.2191 4.9000 17 1 1.4314 1.2976 4.7520 18 6 -0.0876 -0.1902 5.1787 19 6 -0.3836 0.2683 6.6286 20 16 1.2804 0.3037 7.3935 21 8 1.6917 1.6351 7.6721 22 8 1.4336 -0.7419 8.3435 23 7 2.1926 -0.1689 6.0709 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7093 1.1618 -3.4843 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.9943 0.7582 2.3564 34 1 -0.1964 -1.2717 5.0970 35 1 -0.7604 0.3096 4.4818 36 1 -1.0274 -0.4494 7.1371 37 1 -0.8333 1.2612 6.6356 38 1 3.0617 -0.5996 6.0720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593739329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:56 Heat of formation + Delta-G solvation = -133.530902 kcal Electronic energy + Delta-G solvation = -21745.536462 eV Core-core repulsion = 18328.086591 eV Total energy + Delta-G solvation = -3417.449871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07769 -38.40127 -38.13502 -37.25932 -36.91066 -35.03317 -32.80017 -32.53113 -28.66913 -27.50806 -27.31747 -26.10496 -23.64488 -21.61835 -20.61706 -20.56667 -19.19073 -18.12916 -17.81292 -17.40352 -16.96738 -16.61816 -16.40956 -16.08241 -15.88098 -15.08224 -14.83138 -14.74625 -14.27103 -14.22993 -13.96124 -13.49859 -13.25294 -13.13741 -13.09176 -13.06194 -12.93885 -12.65717 -12.58751 -12.30605 -12.21198 -12.12043 -11.55320 -11.44283 -11.27798 -10.94758 -10.67463 -10.53820 -10.37369 -9.95927 -8.00912 -6.15864 -0.72365 1.42774 1.43354 1.46918 1.53850 1.64519 2.22468 2.48689 2.68540 3.05082 3.23213 3.39360 3.48082 3.80146 3.92788 4.18905 4.31489 4.47244 4.55005 4.75105 4.76507 4.87258 4.94259 5.03810 5.11172 5.14563 5.24724 5.37850 5.60068 5.70197 5.72513 6.06843 6.21172 6.26203 6.46688 6.63767 6.88705 7.25451 7.51988 8.97424 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.043630 B = 0.003336 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.607257 B = 8390.680969 C = 8565.214011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.940 3.060 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.702 5.702 14 C 0.515 3.485 15 O -0.578 6.578 16 C 0.082 3.918 17 H 0.143 0.857 18 C -0.117 4.117 19 C -0.559 4.559 20 S 2.577 3.423 21 O -0.989 6.989 22 O -1.004 7.004 23 N -1.092 6.092 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.259 0.741 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.414 0.586 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 3.081 15.302 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.767 3.233 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.354 5.354 14 C 0.299 3.701 15 O -0.457 6.457 16 C -0.030 4.030 17 H 0.160 0.840 18 C -0.157 4.157 19 C -0.693 4.693 20 S 2.676 3.324 21 O -0.978 6.978 22 O -0.993 6.993 23 N -0.858 5.858 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.252 0.748 34 H 0.113 0.887 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.198 0.802 38 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -6.429 2.761 16.189 17.637 hybrid contribution 0.591 -0.673 -1.809 2.019 sum -5.837 2.087 14.380 15.659 Atomic orbital electron populations 1.21667 0.96616 0.98835 1.00757 1.18377 0.93647 0.92954 0.90140 1.21687 0.97804 0.97880 1.00653 1.21285 1.31629 1.12106 0.91719 0.93957 1.25385 0.95217 0.95565 1.00770 1.69895 1.36997 1.23119 1.23516 0.85841 0.78619 0.78550 0.80254 1.20524 1.20998 1.20319 1.21286 0.97015 0.95275 0.84099 1.46083 1.52427 1.31969 1.04938 1.20598 0.80214 0.84300 0.84960 1.90693 1.39877 1.28092 1.87049 1.22371 0.92330 1.02026 0.86248 0.84016 1.22637 0.92023 1.05215 0.95817 1.30573 1.18039 1.14723 1.06012 1.06043 0.80060 0.73331 0.73008 1.93613 1.81333 1.39011 1.83855 1.93555 1.86346 1.57694 1.61753 1.55389 1.31612 1.78783 1.19999 0.93498 0.92181 0.96211 0.96625 0.92047 0.93821 0.93092 0.94521 0.93920 0.74774 0.88695 0.83342 0.81171 0.80154 0.72377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 8.08 71.98 0.58 -4.20 16 2 C 0.05 2.10 0.50 -52.93 -0.03 2.07 16 3 C -0.12 -5.00 8.08 71.98 0.58 -4.42 16 4 C -0.53 -26.68 8.01 25.60 0.21 -26.47 16 5 H 0.04 2.20 7.74 -2.91 -0.02 2.18 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -45.79 9.35 21.45 0.20 -45.59 16 8 Si 0.94 41.36 29.54 68.60 2.03 43.39 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.15 5.62 4.50 86.38 0.39 6.01 16 13 N -0.70 -19.67 4.96 -463.07 -2.30 -21.96 16 14 C 0.51 14.09 7.10 87.66 0.62 14.71 16 15 O -0.58 -21.19 16.28 -3.02 -0.05 -21.24 16 16 C 0.08 1.42 3.29 44.44 0.15 1.57 16 17 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 18 C -0.12 -1.16 6.15 31.73 0.20 -0.96 16 19 C -0.56 -3.52 7.48 72.64 0.54 -2.98 16 20 S 2.58 45.47 6.41 -56.49 -0.36 45.11 16 21 O -0.99 -23.77 18.14 -127.78 -2.32 -26.09 16 22 O -1.00 -26.16 18.14 -127.78 -2.32 -28.47 16 23 N -1.09 -22.30 6.62 -167.81 -1.11 -23.41 16 24 H 0.05 1.43 6.86 -2.39 -0.02 1.41 16 25 H 0.06 2.73 6.07 -2.39 -0.01 2.71 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 2.85 6.07 -2.39 -0.01 2.83 16 29 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 30 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16 31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.41 9.12 6.16 -92.71 -0.57 8.55 16 34 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.17 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.44 9.93 8.54 -92.75 -0.79 9.14 16 Total: -1.00 -74.17 318.94 -2.83 -76.99 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.27 Total: 13.96 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.67 Total: -12.69 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -3.21 Total: -90.96 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -4.68 Total: -75.80 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 45.47 SS G_CDS: -0.36 Total: 45.11 kcal Total: -74.17 -2.83 -76.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593739329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.539 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds