Wall clock time and date at job start Fri Apr 10 2020 14:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47315 * 2 1 4 4 C 1.52997 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47542 * 304.99524 * 4 3 2 6 6 C 1.50702 * 109.46900 * 185.00015 * 4 3 2 7 7 O 1.21289 * 120.00209 * 329.99612 * 6 4 3 8 8 N 1.34784 * 120.00294 * 149.99976 * 6 4 3 9 9 C 1.37085 * 120.00057 * 179.97438 * 8 6 4 10 10 H 1.08005 * 120.00186 * 222.71780 * 9 8 6 11 11 C 1.38952 * 120.00369 * 42.71816 * 9 8 6 12 12 N 1.31412 * 119.99704 * 19.39641 * 11 9 8 13 13 Si 1.86803 * 120.00225 * 199.39383 * 11 9 8 14 14 H 1.48501 * 109.47018 * 89.99889 * 13 11 9 15 15 H 1.48500 * 109.46928 * 210.00023 * 13 11 9 16 16 H 1.48494 * 109.47023 * 329.99995 * 13 11 9 17 17 C 1.46499 * 119.99779 * 359.97438 * 8 6 4 18 18 C 1.52990 * 117.50201 * 183.36706 * 17 8 6 19 19 C 1.52996 * 117.50329 * 114.70348 * 17 8 6 20 20 S 1.81399 * 109.47401 * 64.99874 * 4 3 2 21 21 N 1.65599 * 104.44944 * 59.99958 * 20 4 3 22 22 O 1.42101 * 110.54313 * 171.62134 * 20 4 3 23 23 O 1.42100 * 110.54428 * 308.37374 * 20 4 3 24 24 H 1.08989 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46467 * 300.00123 * 1 2 3 26 26 H 1.08993 * 109.46982 * 59.99636 * 1 2 3 27 27 H 1.09000 * 109.46926 * 119.99948 * 2 1 3 28 28 H 1.09002 * 109.46933 * 239.99377 * 2 1 3 29 29 H 1.09000 * 109.47081 * 299.99853 * 3 2 1 30 30 H 1.09000 * 109.47180 * 60.00068 * 3 2 1 31 31 H 0.97001 * 119.99933 * 174.90071 * 12 11 9 32 32 H 1.09008 * 115.55036 * 329.03806 * 17 8 6 33 33 H 1.09002 * 117.49781 * 359.97438 * 18 17 8 34 34 H 1.09000 * 117.50816 * 145.01619 * 18 17 8 35 35 H 1.09001 * 117.50384 * 214.97859 * 19 17 8 36 36 H 1.09003 * 117.49322 * 359.97438 * 19 17 8 37 37 H 0.96999 * 120.00452 * 149.99913 * 21 20 4 38 38 H 0.97002 * 119.99928 * 330.00072 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8528 0.8410 6 6 4.0725 2.8577 0.1232 7 8 3.4170 3.7752 -0.3234 8 7 5.2505 3.1040 0.7301 9 6 5.7078 4.3915 0.8423 10 1 6.7480 4.6134 0.6546 11 6 4.8330 5.4111 1.1974 12 7 3.6943 5.1241 1.7872 13 14 5.2758 7.1896 0.8366 14 1 4.7706 7.5622 -0.5092 15 1 4.6571 8.0710 1.8591 16 1 6.7517 7.3495 0.8730 17 6 6.0422 1.9959 1.2700 18 6 7.3308 2.3462 2.0165 19 6 7.4001 1.7167 0.6229 20 16 4.1741 0.7197 -1.5510 21 7 3.5555 1.7009 -2.7328 22 8 5.5815 0.8821 -1.6618 23 8 3.5614 -0.5407 -1.7857 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1176 5.8378 2.1017 32 1 5.4699 1.1400 1.6281 33 1 7.5899 3.4012 2.1056 34 1 7.6067 1.7207 2.8655 35 1 7.7216 0.6773 0.5556 36 1 7.7043 2.3574 -0.2048 37 1 4.0374 1.8196 -3.5662 38 1 2.7112 2.1571 -2.5917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:34 Heat of formation + Delta-G solvation = -70.396615 kcal Electronic energy + Delta-G solvation = -23196.340386 eV Core-core repulsion = 19781.628223 eV Total energy + Delta-G solvation = -3414.712163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.91676 -36.95838 -36.32495 -35.57724 -34.91983 -32.92870 -32.67773 -31.24627 -30.06847 -25.75436 -23.87074 -21.64926 -21.33304 -21.09804 -19.83227 -18.91589 -17.53147 -17.36481 -16.26503 -16.15944 -15.70292 -15.16525 -14.84142 -14.44547 -14.03101 -13.82361 -13.36231 -13.32666 -12.94018 -12.41542 -12.24070 -11.90114 -11.79462 -11.68487 -11.63631 -11.20967 -11.11826 -10.99158 -10.90813 -10.78913 -10.69116 -10.48859 -10.24639 -9.98736 -9.96036 -9.83631 -9.63162 -8.83447 -8.24699 -7.15930 -6.24508 -3.97643 0.61811 3.18097 3.24451 3.32087 3.34671 3.87597 4.02975 4.17484 4.48841 4.59346 4.77635 5.02316 5.18188 5.20047 5.26049 5.35571 5.52739 5.63478 5.71405 5.77797 5.93983 5.97270 6.03845 6.15658 6.27616 6.34258 6.36133 6.43425 6.49514 6.69622 6.81963 6.95802 7.45848 7.51729 8.11797 8.88047 8.95775 9.49016 10.06659 10.83368 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.007510 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.882678 B = 3727.569340 C = 4394.448348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.170 4.170 3 C -0.081 4.081 4 C -0.599 4.599 5 H 0.142 0.858 6 C 0.491 3.509 7 O -0.518 6.518 8 N -0.403 5.403 9 C -0.344 4.344 10 H 0.085 0.915 11 C 0.072 3.928 12 N -0.824 5.824 13 Si 0.916 3.084 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.054 3.946 18 C -0.176 4.176 19 C -0.178 4.178 20 S 2.617 3.383 21 N -1.241 6.241 22 O -0.950 6.950 23 O -0.970 6.970 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.266 0.734 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.415 0.585 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -8.109 -2.838 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C -0.120 4.120 4 C -0.712 4.712 5 H 0.159 0.841 6 C 0.276 3.724 7 O -0.395 6.395 8 N -0.123 5.123 9 C -0.471 4.471 10 H 0.103 0.897 11 C -0.140 4.140 12 N -0.457 5.457 13 Si 0.743 3.257 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.052 4.052 18 C -0.214 4.214 19 C -0.217 4.217 20 S 2.708 3.292 21 N -0.914 5.914 22 O -0.940 6.940 23 O -0.959 6.959 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.244 0.756 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.343 -8.457 -3.028 9.083 hybrid contribution -0.372 1.483 0.350 1.569 sum -1.715 -6.974 -2.678 7.665 Atomic orbital electron populations 1.21684 0.95490 1.01353 1.01808 1.22296 0.96925 0.96573 1.04998 1.21157 0.88348 0.97204 1.05257 1.30496 1.07933 1.10579 1.22197 0.84076 1.18337 0.84378 0.85823 0.83893 1.90546 1.55451 1.43775 1.49766 1.42651 1.17504 1.04602 1.47551 1.18996 0.96195 0.81407 1.50487 0.89732 1.25259 0.95144 0.99823 0.93729 1.69841 1.10811 1.33551 1.31545 0.86149 0.78431 0.82650 0.78474 1.20177 1.21263 1.19722 1.21799 0.87596 0.93247 1.02580 1.23163 1.00940 1.02621 0.94638 1.23213 1.01447 1.00864 0.96199 1.04823 0.74225 0.74113 0.76056 1.52988 1.36655 1.69030 1.32704 1.93602 1.29462 1.85995 1.84895 1.93500 1.77768 1.40800 1.83783 0.92778 0.92866 0.92693 0.91752 0.87866 0.90755 0.89347 0.92377 0.88501 0.87383 0.89712 0.89550 0.88434 0.75583 0.75657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.17 -2.41 5.65 -26.73 -0.15 -2.56 16 3 C -0.08 -1.34 4.15 -26.73 -0.11 -1.45 16 4 C -0.60 -10.97 2.27 -27.88 -0.06 -11.04 16 5 H 0.14 2.32 6.01 -51.92 -0.31 2.01 16 6 C 0.49 11.59 5.85 -10.98 -0.06 11.53 16 7 O -0.52 -13.73 13.93 5.55 0.08 -13.65 16 8 N -0.40 -9.80 2.85 -107.73 -0.31 -10.11 16 9 C -0.34 -9.09 7.99 -14.94 -0.12 -9.20 16 10 H 0.09 2.17 7.19 -52.48 -0.38 1.80 16 11 C 0.07 1.94 4.34 -17.47 -0.08 1.87 16 12 N -0.82 -23.22 11.68 55.50 0.65 -22.57 16 13 Si 0.92 21.19 29.60 -169.99 -5.03 16.16 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C 0.05 1.09 5.65 -67.94 -0.38 0.70 16 18 C -0.18 -3.20 9.80 -26.70 -0.26 -3.46 16 19 C -0.18 -3.28 9.45 -26.70 -0.25 -3.53 16 20 S 2.62 44.68 5.46 -107.50 -0.59 44.10 16 21 N -1.24 -18.55 9.22 60.35 0.56 -17.99 16 22 O -0.95 -18.58 16.85 -57.54 -0.97 -19.55 16 23 O -0.97 -16.98 14.89 -57.54 -0.86 -17.84 16 24 H 0.05 0.58 8.14 -51.94 -0.42 0.16 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 1.54 4.90 -51.93 -0.25 1.28 16 29 H 0.07 1.17 6.56 -51.93 -0.34 0.83 16 30 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.27 7.19 8.32 -40.82 -0.34 6.85 16 32 H 0.10 1.73 6.25 -51.92 -0.32 1.40 16 33 H 0.11 2.12 6.69 -51.93 -0.35 1.78 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 37 H 0.42 5.35 8.96 -34.47 -0.31 5.04 16 38 H 0.42 5.82 7.47 -34.47 -0.26 5.57 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -33.22 318.33 -7.83 -41.04 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.04 Total: 14.18 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.11 Total: -18.56 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.90 Total: -50.67 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -1.75 Total: -51.04 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 44.68 SS G_CDS: -0.59 Total: 44.10 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.22 -7.83 -41.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.354 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds