Wall clock time and date at job start Fri Apr 10 2020 14:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47315 * 2 1 4 4 C 1.52997 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47542 * 304.99524 * 4 3 2 6 6 C 1.50702 * 109.46900 * 185.00015 * 4 3 2 7 7 O 1.21289 * 120.00209 * 329.99612 * 6 4 3 8 8 N 1.34784 * 120.00294 * 149.99976 * 6 4 3 9 9 C 1.37085 * 120.00057 * 179.97438 * 8 6 4 10 10 H 1.08005 * 120.00186 * 222.71780 * 9 8 6 11 11 C 1.38952 * 120.00369 * 42.71816 * 9 8 6 12 12 N 1.31412 * 119.99704 * 19.39641 * 11 9 8 13 13 Si 1.86803 * 120.00225 * 199.39383 * 11 9 8 14 14 H 1.48501 * 109.47018 * 89.99889 * 13 11 9 15 15 H 1.48500 * 109.46928 * 210.00023 * 13 11 9 16 16 H 1.48494 * 109.47023 * 329.99995 * 13 11 9 17 17 C 1.46499 * 119.99779 * 359.97438 * 8 6 4 18 18 C 1.52990 * 117.50201 * 183.36706 * 17 8 6 19 19 C 1.52996 * 117.50329 * 114.70348 * 17 8 6 20 20 S 1.81399 * 109.47401 * 64.99874 * 4 3 2 21 21 N 1.65599 * 104.44944 * 59.99958 * 20 4 3 22 22 O 1.42101 * 110.54313 * 171.62134 * 20 4 3 23 23 O 1.42100 * 110.54428 * 308.37374 * 20 4 3 24 24 H 1.08989 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46467 * 300.00123 * 1 2 3 26 26 H 1.08993 * 109.46982 * 59.99636 * 1 2 3 27 27 H 1.09000 * 109.46926 * 119.99948 * 2 1 3 28 28 H 1.09002 * 109.46933 * 239.99377 * 2 1 3 29 29 H 1.09000 * 109.47081 * 299.99853 * 3 2 1 30 30 H 1.09000 * 109.47180 * 60.00068 * 3 2 1 31 31 H 0.97001 * 119.99933 * 174.90071 * 12 11 9 32 32 H 1.09008 * 115.55036 * 329.03806 * 17 8 6 33 33 H 1.09002 * 117.49781 * 359.97438 * 18 17 8 34 34 H 1.09000 * 117.50816 * 145.01619 * 18 17 8 35 35 H 1.09001 * 117.50384 * 214.97859 * 19 17 8 36 36 H 1.09003 * 117.49322 * 359.97438 * 19 17 8 37 37 H 0.96999 * 120.00452 * 149.99913 * 21 20 4 38 38 H 0.97002 * 119.99928 * 330.00072 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8528 0.8410 6 6 4.0725 2.8577 0.1232 7 8 3.4170 3.7752 -0.3234 8 7 5.2505 3.1040 0.7301 9 6 5.7078 4.3915 0.8423 10 1 6.7480 4.6134 0.6546 11 6 4.8330 5.4111 1.1974 12 7 3.6943 5.1241 1.7872 13 14 5.2758 7.1896 0.8366 14 1 4.7706 7.5622 -0.5092 15 1 4.6571 8.0710 1.8591 16 1 6.7517 7.3495 0.8730 17 6 6.0422 1.9959 1.2700 18 6 7.3308 2.3462 2.0165 19 6 7.4001 1.7167 0.6229 20 16 4.1741 0.7197 -1.5510 21 7 3.5555 1.7009 -2.7328 22 8 5.5815 0.8821 -1.6618 23 8 3.5614 -0.5407 -1.7857 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1176 5.8378 2.1017 32 1 5.4699 1.1400 1.6281 33 1 7.5899 3.4012 2.1056 34 1 7.6067 1.7207 2.8655 35 1 7.7216 0.6773 0.5556 36 1 7.7043 2.3574 -0.2048 37 1 4.0374 1.8196 -3.5662 38 1 2.7112 2.1571 -2.5917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:33 Heat of formation + Delta-G solvation = -95.317606 kcal Electronic energy + Delta-G solvation = -23197.421041 eV Core-core repulsion = 19781.628223 eV Total energy + Delta-G solvation = -3415.792818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64764 -38.39445 -37.91476 -37.04208 -36.31892 -34.76140 -33.98025 -33.01107 -31.48545 -27.46750 -25.37664 -23.16834 -22.89675 -22.30111 -21.51521 -20.36088 -18.96373 -18.88594 -17.94984 -17.74892 -17.09689 -16.77645 -16.49645 -15.97802 -15.61204 -15.18802 -15.00308 -14.65540 -14.55402 -13.85252 -13.70161 -13.39043 -13.20802 -13.17782 -13.07800 -12.90214 -12.79493 -12.74382 -12.32489 -12.24005 -12.08820 -11.87438 -11.85331 -11.62652 -11.28669 -11.23050 -11.03634 -10.74864 -10.07885 -9.02454 -8.23985 -6.00634 -0.79329 1.37470 1.45498 1.50277 1.82588 2.14158 2.38793 2.59527 2.80484 3.09297 3.15890 3.39561 3.60959 3.82472 3.87937 4.10242 4.19142 4.26263 4.33800 4.41921 4.61114 4.74882 4.92077 4.94984 5.01707 5.04449 5.18463 5.28246 5.29507 5.34652 5.46960 5.50619 5.52197 6.15792 6.31715 6.95656 7.07027 7.61111 8.21404 8.83394 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.007510 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.882678 B = 3727.569340 C = 4394.448348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.166 4.166 3 C -0.078 4.078 4 C -0.600 4.600 5 H 0.159 0.841 6 C 0.485 3.515 7 O -0.556 6.556 8 N -0.423 5.423 9 C -0.357 4.357 10 H 0.082 0.918 11 C 0.027 3.973 12 N -0.860 5.860 13 Si 0.969 3.031 14 H -0.288 1.288 15 H -0.281 1.281 16 H -0.257 1.257 17 C 0.023 3.977 18 C -0.166 4.166 19 C -0.166 4.166 20 S 2.645 3.355 21 N -1.237 6.237 22 O -0.972 6.972 23 O -0.966 6.966 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.262 0.738 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.425 0.575 38 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 -9.676 -2.996 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C -0.117 4.117 4 C -0.711 4.711 5 H 0.176 0.824 6 C 0.271 3.729 7 O -0.437 6.437 8 N -0.143 5.143 9 C -0.485 4.485 10 H 0.099 0.901 11 C -0.181 4.181 12 N -0.494 5.494 13 Si 0.795 3.205 14 H -0.214 1.214 15 H -0.207 1.207 16 H -0.181 1.181 17 C -0.082 4.082 18 C -0.203 4.203 19 C -0.204 4.204 20 S 2.734 3.266 21 N -0.913 5.913 22 O -0.961 6.961 23 O -0.955 6.955 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.257 0.743 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.041 -10.023 -3.167 10.563 hybrid contribution -0.434 1.877 0.331 1.955 sum -1.474 -8.146 -2.836 8.751 Atomic orbital electron populations 1.21716 0.93960 1.02682 1.02143 1.22278 0.98335 0.94480 1.05296 1.21180 0.87141 0.98926 1.04470 1.30549 1.09087 1.07299 1.24204 0.82358 1.19002 0.83737 0.87514 0.82619 1.90508 1.56439 1.45718 1.50996 1.42868 1.18275 1.04969 1.48149 1.19170 0.96148 0.82987 1.50161 0.90072 1.25987 0.95218 1.03211 0.93654 1.69934 1.11980 1.34110 1.33420 0.85319 0.78955 0.78762 0.77503 1.21414 1.20674 1.18112 1.22161 0.88359 0.93151 1.04481 1.23219 0.99081 1.02182 0.95847 1.23193 0.99632 1.02067 0.95547 1.03880 0.73408 0.73916 0.75388 1.52839 1.36935 1.68881 1.32680 1.93576 1.31072 1.86411 1.85069 1.93514 1.77700 1.40810 1.83511 0.90942 0.92868 0.92171 0.90718 0.88178 0.90430 0.91430 0.92858 0.86063 0.89450 0.86165 0.86582 0.90623 0.74328 0.74991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.91 71.98 0.71 -2.56 16 2 C -0.17 -4.37 5.65 30.60 0.17 -4.19 16 3 C -0.08 -2.53 4.15 30.59 0.13 -2.40 16 4 C -0.60 -21.40 2.27 29.85 0.07 -21.33 16 5 H 0.16 4.96 6.01 -2.39 -0.01 4.95 16 6 C 0.49 22.98 5.85 87.66 0.51 23.50 16 7 O -0.56 -30.07 13.93 -3.06 -0.04 -30.11 16 8 N -0.42 -20.62 2.85 -613.14 -1.74 -22.36 16 9 C -0.36 -19.16 7.99 84.04 0.67 -18.49 16 10 H 0.08 4.26 7.19 -2.91 -0.02 4.24 16 11 C 0.03 1.47 4.34 84.93 0.37 1.84 16 12 N -0.86 -49.63 11.68 21.66 0.25 -49.37 16 13 Si 0.97 44.21 29.60 68.60 2.03 46.24 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 17 C 0.02 0.92 5.65 44.99 0.25 1.17 16 18 C -0.17 -5.75 9.80 30.61 0.30 -5.45 16 19 C -0.17 -5.80 9.45 30.62 0.29 -5.51 16 20 S 2.65 85.88 5.46 -56.49 -0.31 85.57 16 21 N -1.24 -35.43 9.22 37.02 0.34 -35.09 16 22 O -0.97 -36.52 16.85 -127.65 -2.15 -38.67 16 23 O -0.97 -31.43 14.89 -127.65 -1.90 -33.33 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.10 2.72 4.90 -2.39 -0.01 2.71 16 29 H 0.08 2.41 6.56 -2.39 -0.02 2.39 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.26 14.58 8.32 -92.71 -0.77 13.81 16 32 H 0.12 4.06 6.25 -2.38 -0.01 4.05 16 33 H 0.09 3.41 6.69 -2.39 -0.02 3.39 16 34 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.43 10.39 8.96 -96.74 -0.87 9.52 16 38 H 0.42 11.40 7.47 -96.74 -0.72 10.67 16 Total: -1.00 -71.57 318.33 -0.53 -72.10 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.49 Total: 38.45 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 3.48 Total: -33.43 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -1.15 Total: -106.83 kcal Atomic # 8 Polarization: -98.02 SS G_CDS: -4.09 Total: -102.11 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 85.88 SS G_CDS: -0.31 Total: 85.57 kcal Total: -71.57 -0.53 -72.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.214 kcal (2) G-P(sol) polarization free energy of solvation -71.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds