Wall clock time and date at job start Fri Apr 10 2020 14:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47102 * 2 1 4 4 C 1.53005 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46971 * 55.00400 * 4 3 2 6 6 C 1.50700 * 109.47191 * 174.99506 * 4 3 2 7 7 O 1.21290 * 119.99858 * 35.00705 * 6 4 3 8 8 N 1.34781 * 120.00177 * 214.99991 * 6 4 3 9 9 C 1.37095 * 119.99895 * 180.02562 * 8 6 4 10 10 H 1.08004 * 119.99811 * 222.97152 * 9 8 6 11 11 C 1.38952 * 120.00051 * 42.69785 * 9 8 6 12 12 N 1.31406 * 119.99743 * 19.49651 * 11 9 8 13 13 Si 1.86805 * 119.99850 * 199.49605 * 11 9 8 14 14 H 1.48504 * 109.47020 * 60.00231 * 13 11 9 15 15 H 1.48499 * 109.46694 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47010 * 299.99809 * 13 11 9 17 17 C 1.46498 * 119.99709 * 0.02562 * 8 6 4 18 18 C 1.53005 * 117.49800 * 183.30130 * 17 8 6 19 19 C 1.52998 * 117.49729 * 114.64580 * 17 8 6 20 20 S 1.81397 * 109.47305 * 294.99918 * 4 3 2 21 21 N 1.65595 * 104.44992 * 299.99778 * 20 4 3 22 22 O 1.42105 * 110.54040 * 51.62391 * 20 4 3 23 23 O 1.42101 * 110.54150 * 188.36881 * 20 4 3 24 24 H 1.08999 * 109.47028 * 60.00052 * 1 2 3 25 25 H 1.08997 * 109.47497 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47356 * 300.00055 * 1 2 3 27 27 H 1.08991 * 109.47126 * 239.99842 * 2 1 3 28 28 H 1.08999 * 109.47028 * 119.99948 * 2 1 3 29 29 H 1.08998 * 109.47862 * 60.00205 * 3 2 1 30 30 H 1.08999 * 109.47136 * 299.99882 * 3 2 1 31 31 H 0.97002 * 119.99479 * 174.90678 * 12 11 9 32 32 H 1.08997 * 115.55153 * 328.97421 * 17 8 6 33 33 H 1.09000 * 117.49439 * 0.02562 * 18 17 8 34 34 H 1.09001 * 117.49752 * 145.01849 * 18 17 8 35 35 H 1.08996 * 117.50263 * 214.97791 * 19 17 8 36 36 H 1.09007 * 117.50252 * 359.97438 * 19 17 8 37 37 H 0.97001 * 120.00111 * 149.99563 * 21 20 4 38 38 H 0.96999 * 120.00170 * 329.99827 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0724 2.8578 -0.1233 7 8 3.4631 3.7657 0.4017 8 7 5.1988 3.1148 -0.8174 9 6 5.6560 4.4023 -0.9297 10 1 6.0202 4.7651 -1.8796 11 6 5.6457 5.2423 0.1771 12 7 5.5728 4.7342 1.3868 13 14 5.7354 7.0938 -0.0546 14 1 4.5742 7.5485 -0.8609 15 1 5.7076 7.7605 1.2721 16 1 6.9948 7.4440 -0.7589 17 6 5.9344 2.0182 -1.4519 18 6 7.2461 2.3638 -2.1597 19 6 6.0045 2.0057 -2.9802 20 16 4.1741 0.7199 1.5510 21 7 3.5554 1.7012 2.7328 22 8 3.5613 -0.5405 1.7857 23 8 5.5814 0.8823 1.6617 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 5.6399 5.3144 2.1613 32 1 5.8755 1.0562 -0.9429 33 1 7.5618 3.4071 -2.1529 34 1 8.0500 1.6290 -2.1166 35 1 5.9921 1.0355 -3.4767 36 1 5.5029 2.8132 -3.5137 37 1 3.3514 1.3367 3.6083 38 1 3.3970 2.6405 2.5496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:36 Heat of formation + Delta-G solvation = -73.515778 kcal Electronic energy + Delta-G solvation = -23221.570274 eV Core-core repulsion = 19806.722854 eV Total energy + Delta-G solvation = -3414.847420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.98823 -36.83547 -36.41439 -35.41043 -34.92171 -32.96776 -32.43069 -31.28522 -30.07679 -25.77695 -23.88421 -21.81905 -21.40030 -21.12422 -19.76839 -18.78157 -17.41768 -17.20475 -16.29018 -16.14754 -15.72707 -14.87886 -14.82375 -14.34683 -14.12917 -13.99679 -13.41375 -13.25073 -12.96851 -12.59097 -12.17174 -11.88188 -11.71870 -11.59907 -11.41839 -11.27609 -11.16971 -10.99610 -10.94750 -10.80676 -10.71749 -10.43167 -10.31092 -10.09127 -9.89788 -9.78551 -9.64047 -8.87340 -8.30249 -7.21897 -6.24651 -3.99008 0.73838 3.23680 3.31411 3.33911 3.35887 3.89433 4.04778 4.12105 4.48060 4.59151 4.75279 4.98917 5.16997 5.26811 5.27001 5.36609 5.46705 5.58361 5.66879 5.70930 5.85569 5.99929 6.03368 6.12264 6.14327 6.27124 6.36947 6.43112 6.60835 6.62877 6.68328 6.84968 7.48091 7.75862 8.07695 8.84227 8.89775 9.44289 10.00092 10.82983 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.007283 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.625316 B = 3843.507920 C = 4137.311111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C -0.079 4.079 4 C -0.600 4.600 5 H 0.141 0.859 6 C 0.488 3.512 7 O -0.523 6.523 8 N -0.400 5.400 9 C -0.347 4.347 10 H 0.085 0.915 11 C 0.073 3.927 12 N -0.817 5.817 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.277 1.277 17 C 0.062 3.938 18 C -0.166 4.166 19 C -0.206 4.206 20 S 2.614 3.386 21 N -1.239 6.239 22 O -0.980 6.980 23 O -0.946 6.946 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.269 0.731 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.410 0.590 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.588 -7.129 -2.428 8.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C -0.118 4.118 4 C -0.713 4.713 5 H 0.159 0.841 6 C 0.273 3.727 7 O -0.402 6.402 8 N -0.119 5.119 9 C -0.475 4.475 10 H 0.102 0.898 11 C -0.139 4.139 12 N -0.449 5.449 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.203 1.203 17 C -0.044 4.044 18 C -0.203 4.203 19 C -0.245 4.245 20 S 2.704 3.296 21 N -0.914 5.914 22 O -0.969 6.969 23 O -0.935 6.935 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.238 0.762 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.345 -7.513 -1.950 8.895 hybrid contribution -0.237 1.418 -0.245 1.458 sum -4.582 -6.095 -2.196 7.935 Atomic orbital electron populations 1.21682 0.95543 1.01350 1.01708 1.22260 0.96793 0.96564 1.05027 1.21139 0.88087 0.97509 1.05044 1.30539 1.08133 1.09994 1.22635 0.84130 1.18343 0.82167 0.86061 0.86096 1.90540 1.56898 1.44698 1.48035 1.42676 1.18202 1.05121 1.45902 1.18938 1.46771 0.85574 0.96191 0.89778 1.25255 0.94299 0.99822 0.94543 1.69834 1.40826 1.36353 0.97918 0.86178 0.78428 0.83320 0.77535 1.19933 1.21037 1.20306 1.21738 0.98605 0.92927 0.91129 1.23095 0.90799 1.03504 1.02932 1.23381 1.03574 1.02316 0.95242 1.05028 0.74810 0.73465 0.76323 1.52963 1.86248 1.25175 1.27047 1.93457 1.77613 1.41514 1.84292 1.93636 1.29892 1.85543 1.84451 0.93004 0.92786 0.92658 0.91844 0.87754 0.89990 0.90127 0.92094 0.88287 0.87157 0.89353 0.89481 0.88767 0.76231 0.74051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.17 -2.38 5.65 -26.74 -0.15 -2.53 16 3 C -0.08 -1.28 4.22 -26.73 -0.11 -1.39 16 4 C -0.60 -11.18 2.11 -27.88 -0.06 -11.23 16 5 H 0.14 2.29 6.39 -51.92 -0.33 1.96 16 6 C 0.49 11.44 5.65 -10.98 -0.06 11.38 16 7 O -0.52 -13.56 12.91 5.55 0.07 -13.49 16 8 N -0.40 -9.64 2.85 -107.73 -0.31 -9.95 16 9 C -0.35 -9.03 7.98 -14.93 -0.12 -9.15 16 10 H 0.08 2.09 7.20 -52.48 -0.38 1.71 16 11 C 0.07 1.95 4.34 -17.47 -0.08 1.87 16 12 N -0.82 -22.57 11.69 55.50 0.65 -21.93 16 13 Si 0.92 20.88 29.60 -169.99 -5.03 15.85 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 C 0.06 1.26 5.45 -67.93 -0.37 0.89 16 18 C -0.17 -3.00 9.80 -26.69 -0.26 -3.26 16 19 C -0.21 -3.44 10.36 -26.70 -0.28 -3.71 16 20 S 2.61 49.84 5.46 -107.50 -0.59 49.26 16 21 N -1.24 -21.72 8.91 60.35 0.54 -21.19 16 22 O -0.98 -18.30 14.89 -57.54 -0.86 -19.16 16 23 O -0.95 -21.86 17.62 -57.54 -1.01 -22.87 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.60 4.90 -51.93 -0.25 1.34 16 29 H 0.08 1.33 7.63 -51.93 -0.40 0.93 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.27 7.12 8.32 -40.82 -0.34 6.78 16 32 H 0.10 1.88 6.51 -51.93 -0.34 1.55 16 33 H 0.11 2.15 6.69 -51.93 -0.35 1.80 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.41 5.84 8.96 -34.47 -0.31 5.53 16 38 H 0.43 8.21 7.54 -34.47 -0.26 7.95 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -32.55 319.99 -7.97 -40.52 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -5.13 Total: 16.62 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.12 Total: -18.50 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.88 Total: -53.06 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -1.80 Total: -55.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Atomic # 16 Polarization: 49.84 SS G_CDS: -0.59 Total: 49.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.55 -7.97 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.996 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds