Wall clock time and date at job start Fri Apr 10 2020 14:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47102 * 2 1 4 4 C 1.53005 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46971 * 55.00400 * 4 3 2 6 6 C 1.50700 * 109.47191 * 174.99506 * 4 3 2 7 7 O 1.21290 * 119.99858 * 35.00705 * 6 4 3 8 8 N 1.34781 * 120.00177 * 214.99991 * 6 4 3 9 9 C 1.37095 * 119.99895 * 180.02562 * 8 6 4 10 10 H 1.08004 * 119.99811 * 222.97152 * 9 8 6 11 11 C 1.38952 * 120.00051 * 42.69785 * 9 8 6 12 12 N 1.31406 * 119.99743 * 19.49651 * 11 9 8 13 13 Si 1.86805 * 119.99850 * 199.49605 * 11 9 8 14 14 H 1.48504 * 109.47020 * 60.00231 * 13 11 9 15 15 H 1.48499 * 109.46694 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47010 * 299.99809 * 13 11 9 17 17 C 1.46498 * 119.99709 * 0.02562 * 8 6 4 18 18 C 1.53005 * 117.49800 * 183.30130 * 17 8 6 19 19 C 1.52998 * 117.49729 * 114.64580 * 17 8 6 20 20 S 1.81397 * 109.47305 * 294.99918 * 4 3 2 21 21 N 1.65595 * 104.44992 * 299.99778 * 20 4 3 22 22 O 1.42105 * 110.54040 * 51.62391 * 20 4 3 23 23 O 1.42101 * 110.54150 * 188.36881 * 20 4 3 24 24 H 1.08999 * 109.47028 * 60.00052 * 1 2 3 25 25 H 1.08997 * 109.47497 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47356 * 300.00055 * 1 2 3 27 27 H 1.08991 * 109.47126 * 239.99842 * 2 1 3 28 28 H 1.08999 * 109.47028 * 119.99948 * 2 1 3 29 29 H 1.08998 * 109.47862 * 60.00205 * 3 2 1 30 30 H 1.08999 * 109.47136 * 299.99882 * 3 2 1 31 31 H 0.97002 * 119.99479 * 174.90678 * 12 11 9 32 32 H 1.08997 * 115.55153 * 328.97421 * 17 8 6 33 33 H 1.09000 * 117.49439 * 0.02562 * 18 17 8 34 34 H 1.09001 * 117.49752 * 145.01849 * 18 17 8 35 35 H 1.08996 * 117.50263 * 214.97791 * 19 17 8 36 36 H 1.09007 * 117.50252 * 359.97438 * 19 17 8 37 37 H 0.97001 * 120.00111 * 149.99563 * 21 20 4 38 38 H 0.96999 * 120.00170 * 329.99827 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0724 2.8578 -0.1233 7 8 3.4631 3.7657 0.4017 8 7 5.1988 3.1148 -0.8174 9 6 5.6560 4.4023 -0.9297 10 1 6.0202 4.7651 -1.8796 11 6 5.6457 5.2423 0.1771 12 7 5.5728 4.7342 1.3868 13 14 5.7354 7.0938 -0.0546 14 1 4.5742 7.5485 -0.8609 15 1 5.7076 7.7605 1.2721 16 1 6.9948 7.4440 -0.7589 17 6 5.9344 2.0182 -1.4519 18 6 7.2461 2.3638 -2.1597 19 6 6.0045 2.0057 -2.9802 20 16 4.1741 0.7199 1.5510 21 7 3.5554 1.7012 2.7328 22 8 3.5613 -0.5405 1.7857 23 8 5.5814 0.8823 1.6617 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 5.6399 5.3144 2.1613 32 1 5.8755 1.0562 -0.9429 33 1 7.5618 3.4071 -2.1529 34 1 8.0500 1.6290 -2.1166 35 1 5.9921 1.0355 -3.4767 36 1 5.5029 2.8132 -3.5137 37 1 3.3514 1.3367 3.6083 38 1 3.3970 2.6405 2.5496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:35 Heat of formation + Delta-G solvation = -97.882428 kcal Electronic energy + Delta-G solvation = -23222.626891 eV Core-core repulsion = 19806.722854 eV Total energy + Delta-G solvation = -3415.904037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69195 -38.37164 -37.99552 -37.05215 -36.30381 -34.76249 -33.91410 -33.01350 -31.48733 -27.45128 -25.37182 -23.24492 -22.95635 -22.30595 -21.48199 -20.35314 -18.98672 -18.77958 -18.00739 -17.71306 -17.20623 -16.73750 -16.33978 -15.97800 -15.56730 -15.43486 -14.82094 -14.79627 -14.52860 -13.97503 -13.57782 -13.40042 -13.24970 -13.12879 -13.07520 -12.86328 -12.82927 -12.75970 -12.30128 -12.27267 -12.11779 -11.86465 -11.79825 -11.72113 -11.31930 -11.21109 -11.05338 -10.74492 -10.09943 -9.03900 -8.19899 -5.97755 -0.80126 1.41175 1.48754 1.52442 1.82895 2.19128 2.31355 2.55646 2.79641 3.07097 3.23711 3.28004 3.60883 3.83086 3.93791 4.07314 4.18345 4.21658 4.31319 4.40776 4.65294 4.77403 4.85731 4.93341 4.97111 5.03952 5.20518 5.22806 5.26648 5.37098 5.42700 5.50842 5.53260 6.15785 6.35614 6.96216 7.04546 7.59081 8.17651 8.87161 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.007283 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.625316 B = 3843.507920 C = 4137.311111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C -0.077 4.077 4 C -0.592 4.592 5 H 0.166 0.834 6 C 0.481 3.519 7 O -0.557 6.557 8 N -0.418 5.418 9 C -0.363 4.363 10 H 0.086 0.914 11 C 0.027 3.973 12 N -0.851 5.851 13 Si 0.974 3.026 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.022 3.978 18 C -0.169 4.169 19 C -0.172 4.172 20 S 2.631 3.369 21 N -1.235 6.235 22 O -0.972 6.972 23 O -0.988 6.988 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.264 0.736 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.423 0.577 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 -8.440 -3.744 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C -0.116 4.116 4 C -0.705 4.705 5 H 0.183 0.817 6 C 0.267 3.733 7 O -0.438 6.438 8 N -0.137 5.137 9 C -0.490 4.490 10 H 0.103 0.897 11 C -0.182 4.182 12 N -0.485 5.485 13 Si 0.799 3.201 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.083 4.083 18 C -0.206 4.206 19 C -0.210 4.210 20 S 2.721 3.279 21 N -0.912 5.912 22 O -0.962 6.962 23 O -0.977 6.977 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.254 0.746 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.910 -8.841 -3.277 10.631 hybrid contribution -0.092 1.736 0.120 1.743 sum -5.002 -7.105 -3.157 9.245 Atomic orbital electron populations 1.21702 0.93797 1.02629 1.02214 1.22249 0.98389 0.94630 1.05178 1.21214 0.86192 0.99260 1.04933 1.30456 1.09745 1.07174 1.23151 0.81688 1.18950 0.81797 0.87585 0.84971 1.90506 1.57853 1.46383 1.49069 1.42876 1.18819 1.05530 1.46445 1.19169 1.46651 0.87031 0.96170 0.89653 1.26013 0.94293 1.03424 0.94461 1.69939 1.43050 1.37162 0.98330 0.85315 0.78548 0.79022 0.77178 1.20569 1.21210 1.18776 1.22045 1.00422 0.92342 0.93450 1.23169 0.91421 1.03173 1.02834 1.23419 1.01144 1.03933 0.92554 1.04259 0.73839 0.73406 0.76355 1.52814 1.85922 1.24669 1.27825 1.93475 1.77205 1.41237 1.84260 1.93597 1.32675 1.86251 1.85181 0.92185 0.91136 0.92599 0.90290 0.88914 0.90472 0.89992 0.92632 0.87347 0.89210 0.86714 0.85440 0.89614 0.74571 0.74657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.91 71.98 0.71 -2.36 16 2 C -0.17 -4.27 5.65 30.59 0.17 -4.10 16 3 C -0.08 -2.39 4.22 30.59 0.13 -2.26 16 4 C -0.59 -21.40 2.11 29.85 0.06 -21.34 16 5 H 0.17 5.04 6.39 -2.39 -0.02 5.02 16 6 C 0.48 22.57 5.65 87.66 0.50 23.06 16 7 O -0.56 -29.38 12.91 -3.06 -0.04 -29.42 16 8 N -0.42 -20.15 2.85 -613.13 -1.74 -21.90 16 9 C -0.36 -19.09 7.98 84.04 0.67 -18.41 16 10 H 0.09 4.31 7.20 -2.91 -0.02 4.28 16 11 C 0.03 1.44 4.34 84.93 0.37 1.80 16 12 N -0.85 -48.29 11.69 21.66 0.25 -48.04 16 13 Si 0.97 43.61 29.60 68.60 2.03 45.64 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 17 C 0.02 0.88 5.45 44.99 0.25 1.13 16 18 C -0.17 -5.84 9.80 30.62 0.30 -5.54 16 19 C -0.17 -5.26 10.36 30.62 0.32 -4.94 16 20 S 2.63 98.43 5.46 -56.49 -0.31 98.12 16 21 N -1.23 -43.19 8.91 37.02 0.33 -42.86 16 22 O -0.97 -34.75 14.89 -127.65 -1.90 -36.65 16 23 O -0.99 -45.70 17.62 -127.65 -2.25 -47.95 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 2.62 4.90 -2.39 -0.01 2.61 16 29 H 0.08 2.45 7.63 -2.39 -0.02 2.43 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.26 14.47 8.32 -92.71 -0.77 13.70 16 32 H 0.11 3.97 6.51 -2.39 -0.02 3.95 16 33 H 0.09 3.48 6.69 -2.39 -0.02 3.46 16 34 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 37 H 0.42 11.90 8.96 -96.75 -0.87 11.03 16 38 H 0.42 16.49 7.54 -96.75 -0.73 15.76 16 Total: -1.00 -70.70 319.99 -0.65 -71.35 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.50 Total: 44.66 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 3.48 Total: -32.96 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -1.16 Total: -112.80 kcal Atomic # 8 Polarization: -109.83 SS G_CDS: -4.19 Total: -114.02 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 98.43 SS G_CDS: -0.31 Total: 98.12 kcal Total: -70.70 -0.65 -71.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.531 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds