Wall clock time and date at job start Fri Apr 10 2020 14:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27641 * 125.76573 * 2 1 4 4 O 1.41384 * 113.17016 * 180.33726 * 3 2 1 5 5 C 1.44250 * 107.50602 * 342.62842 * 4 3 2 6 6 H 1.09006 * 111.01632 * 267.01125 * 5 4 3 7 7 C 1.53000 * 111.01338 * 143.17415 * 5 4 3 8 8 N 1.46499 * 109.46840 * 69.59912 * 7 5 4 9 9 S 1.65599 * 120.00012 * 165.00017 * 8 7 5 10 10 O 1.42099 * 104.27938 * 181.07373 * 9 8 7 11 11 O 1.42106 * 104.27874 * 308.93199 * 9 8 7 12 12 C 1.81401 * 104.44946 * 65.00106 * 9 8 7 13 13 C 1.53003 * 109.47478 * 180.02562 * 12 9 8 14 14 C 1.52993 * 109.47040 * 180.02562 * 13 12 9 15 15 C 1.50707 * 109.47014 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99785 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99911 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00330 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99669 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47273 * 90.00118 * 19 17 15 21 21 H 1.48501 * 109.47441 * 210.00051 * 19 17 15 22 22 H 1.48506 * 109.47325 * 330.00175 * 19 17 15 23 23 C 1.51744 * 125.75676 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47187 * 359.97058 * 1 2 3 25 25 H 1.09005 * 109.47234 * 119.97159 * 1 2 3 26 26 H 1.08999 * 109.47197 * 239.97173 * 1 2 3 27 27 H 1.09002 * 109.47398 * 189.60238 * 7 5 4 28 28 H 1.09001 * 109.47194 * 309.60418 * 7 5 4 29 29 H 0.97001 * 120.00191 * 345.00817 * 8 7 5 30 30 H 1.09006 * 109.47313 * 300.00191 * 12 9 8 31 31 H 1.09007 * 109.46876 * 60.00312 * 12 9 8 32 32 H 1.08999 * 109.46623 * 300.00428 * 13 12 9 33 33 H 1.08997 * 109.46812 * 60.00211 * 13 12 9 34 34 H 1.08999 * 109.47593 * 299.99627 * 14 13 12 35 35 H 1.08998 * 109.47830 * 60.00214 * 14 13 12 36 36 H 0.96993 * 119.99934 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.79812 * 77.01959 * 23 2 1 38 38 H 1.09005 * 110.84394 * 313.49725 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2530 1.0357 0.0000 4 8 3.6328 0.7274 -0.0077 5 6 3.7719 -0.6500 0.3977 6 1 3.9331 -0.7267 1.4730 7 6 4.9003 -1.3376 -0.3736 8 7 6.1897 -0.7928 0.0587 9 16 7.5927 -1.5876 -0.3185 10 8 8.6138 -0.7965 0.2738 11 8 7.3630 -2.9244 0.1054 12 6 7.6895 -1.5013 -2.1278 13 6 8.9586 -2.2103 -2.6052 14 6 9.0404 -2.1369 -4.1311 15 6 10.2901 -2.8357 -4.6013 16 1 10.9592 -3.2866 -3.8835 17 6 10.5792 -2.8993 -5.9480 18 7 9.7647 -2.3498 -6.8221 19 14 12.1286 -3.7649 -6.5307 20 1 11.8308 -5.1982 -6.7803 21 1 12.6064 -3.1327 -7.7865 22 1 13.1804 -3.6522 -5.4884 23 6 2.3937 -1.2314 0.0006 24 1 -0.3633 1.0276 0.0005 25 1 -0.3634 -0.5134 -0.8903 26 1 -0.3633 -0.5143 0.8897 27 1 4.8744 -2.4094 -0.1769 28 1 4.7709 -1.1609 -1.4413 29 1 6.2217 0.0334 0.5659 30 1 6.8164 -1.9885 -2.5621 31 1 7.7164 -0.4575 -2.4409 32 1 9.8318 -1.7234 -2.1709 33 1 8.9312 -3.2540 -2.2922 34 1 8.1672 -2.6234 -4.5657 35 1 9.0680 -1.0931 -4.4439 36 1 9.9679 -2.3949 -7.7694 37 1 2.4341 -1.6797 -0.9922 38 1 2.0513 -1.9556 0.7399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867347402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:10 Heat of formation + Delta-G solvation = -71.687176 kcal Electronic energy + Delta-G solvation = -20693.847310 eV Core-core repulsion = 17279.079184 eV Total energy + Delta-G solvation = -3414.768126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60403 -36.95263 -35.91232 -35.68999 -34.67935 -34.04420 -32.19398 -31.22865 -28.86144 -27.81963 -26.19237 -23.74061 -22.30285 -20.66636 -20.25655 -19.19908 -17.58496 -17.30707 -16.78590 -16.47286 -15.99858 -15.74317 -15.20630 -14.90117 -14.49737 -14.19435 -13.95585 -13.78046 -13.53314 -13.23703 -12.83241 -12.58525 -12.52522 -12.28385 -11.99160 -11.93332 -11.84282 -11.79028 -11.52979 -11.24567 -10.98341 -10.92684 -10.85932 -10.44714 -9.95982 -9.82124 -9.78437 -9.34211 -9.09907 -8.41248 -6.06111 -4.09243 0.42861 1.41923 2.61536 2.82053 3.30143 3.36324 3.40494 3.62130 3.91325 3.97568 4.11773 4.27809 4.40312 4.42107 4.52145 4.85908 4.92889 4.97499 5.03433 5.07598 5.11727 5.16411 5.27034 5.30527 5.42300 5.60723 5.66702 5.88318 6.25813 6.43958 6.82385 6.86990 7.05109 7.56436 7.66281 7.91898 8.32229 8.97057 9.55517 11.05145 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.003051 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.002750 B = 9176.508395 C = 9949.834698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.081 3.919 3 N -0.292 5.292 4 O -0.193 6.193 5 C 0.036 3.964 6 H 0.097 0.903 7 C 0.123 3.877 8 N -1.123 6.123 9 S 2.602 3.398 10 O -0.960 6.960 11 O -0.963 6.963 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.419 0.581 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.109 0.891 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.010 2.500 14.483 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 N -0.034 5.034 4 O -0.212 6.212 5 C -0.024 4.024 6 H 0.115 0.885 7 C -0.005 4.005 8 N -0.881 5.881 9 S 2.698 3.302 10 O -0.951 6.951 11 O -0.953 6.953 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.191 4.191 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.254 0.746 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.229 3.182 14.799 24.472 hybrid contribution 0.564 -0.785 -0.851 1.288 sum -18.665 2.397 13.948 23.424 Atomic orbital electron populations 1.20444 0.85252 1.04714 1.04123 1.26316 0.98239 0.92188 0.94523 1.77948 0.89294 1.23260 1.12902 1.91320 1.15478 1.26613 1.87754 1.23894 0.94691 0.83466 1.00399 0.88493 1.21397 0.81734 0.98484 0.98897 1.55661 1.20479 1.40547 1.71431 1.05280 0.72513 0.73939 0.78454 1.93587 1.55763 1.70183 1.75521 1.93562 1.84443 1.36988 1.80317 1.30543 1.09253 1.10933 1.23292 1.21506 0.91437 0.98655 1.02935 1.19065 0.97437 0.97718 0.86586 1.21255 1.07324 1.35769 0.92114 0.92355 1.25023 0.96943 0.95551 0.96884 1.69955 1.37028 1.44651 1.01804 0.86550 0.83320 0.79658 0.78240 1.20572 1.21168 1.19737 1.23157 0.91552 0.98729 1.05660 0.89919 0.89080 0.89271 0.88258 0.90437 0.74650 0.85588 0.85121 0.91511 0.91540 0.96152 0.96076 0.92889 0.87269 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.30 10.49 36.00 0.38 0.08 16 2 C 0.08 0.57 7.45 -78.55 -0.59 -0.01 16 3 N -0.29 -3.20 12.45 35.66 0.44 -2.76 16 4 O -0.19 -2.29 12.24 -11.37 -0.14 -2.43 16 5 C 0.04 0.30 3.88 -25.80 -0.10 0.20 16 6 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 7 C 0.12 1.11 5.83 -4.04 -0.02 1.08 16 8 N -1.12 -12.32 5.89 -10.61 -0.06 -12.39 16 9 S 2.60 37.62 5.46 -107.50 -0.59 37.03 16 10 O -0.96 -17.00 18.08 -57.54 -1.04 -18.04 16 11 O -0.96 -16.25 17.50 -57.54 -1.01 -17.26 16 12 C -0.61 -9.30 6.07 37.16 0.23 -9.07 16 13 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 15 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.15 -0.87 6.63 -26.44 -0.18 -1.04 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.10 0.79 7.69 -51.93 -0.40 0.39 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.42 4.25 8.62 -34.47 -0.30 3.95 16 30 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.13 1.85 8.14 -51.92 -0.42 1.42 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.11 0.52 7.91 -51.93 -0.41 0.10 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -37.41 338.79 -8.26 -45.67 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.72 Total: -1.60 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.97 Total: -24.04 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.12 Total: -41.06 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -2.19 Total: -37.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 37.62 SS G_CDS: -0.59 Total: 37.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.41 -8.26 -45.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867347402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.013 kcal (2) G-P(sol) polarization free energy of solvation -37.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds