Wall clock time and date at job start Fri Apr 10 2020 14:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27641 * 125.76573 * 2 1 4 4 O 1.41384 * 113.17016 * 180.33726 * 3 2 1 5 5 C 1.44250 * 107.50602 * 342.62842 * 4 3 2 6 6 H 1.09006 * 111.01632 * 267.01125 * 5 4 3 7 7 C 1.53000 * 111.01338 * 143.17415 * 5 4 3 8 8 N 1.46499 * 109.46840 * 69.59912 * 7 5 4 9 9 S 1.65599 * 120.00012 * 165.00017 * 8 7 5 10 10 O 1.42099 * 104.27938 * 181.07373 * 9 8 7 11 11 O 1.42106 * 104.27874 * 308.93199 * 9 8 7 12 12 C 1.81401 * 104.44946 * 65.00106 * 9 8 7 13 13 C 1.53003 * 109.47478 * 180.02562 * 12 9 8 14 14 C 1.52993 * 109.47040 * 180.02562 * 13 12 9 15 15 C 1.50707 * 109.47014 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99785 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99911 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00330 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99669 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47273 * 90.00118 * 19 17 15 21 21 H 1.48501 * 109.47441 * 210.00051 * 19 17 15 22 22 H 1.48506 * 109.47325 * 330.00175 * 19 17 15 23 23 C 1.51744 * 125.75676 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47187 * 359.97058 * 1 2 3 25 25 H 1.09005 * 109.47234 * 119.97159 * 1 2 3 26 26 H 1.08999 * 109.47197 * 239.97173 * 1 2 3 27 27 H 1.09002 * 109.47398 * 189.60238 * 7 5 4 28 28 H 1.09001 * 109.47194 * 309.60418 * 7 5 4 29 29 H 0.97001 * 120.00191 * 345.00817 * 8 7 5 30 30 H 1.09006 * 109.47313 * 300.00191 * 12 9 8 31 31 H 1.09007 * 109.46876 * 60.00312 * 12 9 8 32 32 H 1.08999 * 109.46623 * 300.00428 * 13 12 9 33 33 H 1.08997 * 109.46812 * 60.00211 * 13 12 9 34 34 H 1.08999 * 109.47593 * 299.99627 * 14 13 12 35 35 H 1.08998 * 109.47830 * 60.00214 * 14 13 12 36 36 H 0.96993 * 119.99934 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.79812 * 77.01959 * 23 2 1 38 38 H 1.09005 * 110.84394 * 313.49725 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2530 1.0357 0.0000 4 8 3.6328 0.7274 -0.0077 5 6 3.7719 -0.6500 0.3977 6 1 3.9331 -0.7267 1.4730 7 6 4.9003 -1.3376 -0.3736 8 7 6.1897 -0.7928 0.0587 9 16 7.5927 -1.5876 -0.3185 10 8 8.6138 -0.7965 0.2738 11 8 7.3630 -2.9244 0.1054 12 6 7.6895 -1.5013 -2.1278 13 6 8.9586 -2.2103 -2.6052 14 6 9.0404 -2.1369 -4.1311 15 6 10.2901 -2.8357 -4.6013 16 1 10.9592 -3.2866 -3.8835 17 6 10.5792 -2.8993 -5.9480 18 7 9.7647 -2.3498 -6.8221 19 14 12.1286 -3.7649 -6.5307 20 1 11.8308 -5.1982 -6.7803 21 1 12.6064 -3.1327 -7.7865 22 1 13.1804 -3.6522 -5.4884 23 6 2.3937 -1.2314 0.0006 24 1 -0.3633 1.0276 0.0005 25 1 -0.3634 -0.5134 -0.8903 26 1 -0.3633 -0.5143 0.8897 27 1 4.8744 -2.4094 -0.1769 28 1 4.7709 -1.1609 -1.4413 29 1 6.2217 0.0334 0.5659 30 1 6.8164 -1.9885 -2.5621 31 1 7.7164 -0.4575 -2.4409 32 1 9.8318 -1.7234 -2.1709 33 1 8.9312 -3.2540 -2.2922 34 1 8.1672 -2.6234 -4.5657 35 1 9.0680 -1.0931 -4.4439 36 1 9.9679 -2.3949 -7.7694 37 1 2.4341 -1.6797 -0.9922 38 1 2.0513 -1.9556 0.7399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867347402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:09 Heat of formation + Delta-G solvation = -100.985185 kcal Electronic energy + Delta-G solvation = -20695.117767 eV Core-core repulsion = 17279.079184 eV Total energy + Delta-G solvation = -3416.038583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20406 -38.23857 -37.11209 -36.59560 -36.47651 -34.64243 -34.17380 -31.88918 -29.66944 -29.25603 -26.86810 -25.63603 -22.95930 -22.39767 -20.83062 -20.32638 -18.72548 -18.55071 -18.08818 -17.40939 -17.07172 -16.89426 -16.49282 -16.15320 -15.80652 -15.34322 -14.65630 -14.49276 -14.33909 -14.08249 -14.03722 -13.69288 -13.52555 -13.38932 -13.23614 -13.18296 -13.14574 -12.97663 -12.76160 -12.63730 -12.46689 -12.30416 -12.16436 -11.75614 -11.54529 -11.39214 -11.15159 -10.58266 -10.48600 -10.41016 -8.23435 -6.34577 -0.77554 0.89995 1.39806 1.40715 1.52091 1.69824 2.10152 2.39265 2.71645 3.10050 3.10559 3.21707 3.48645 3.59228 3.69625 3.76184 3.91594 3.93782 4.37340 4.38682 4.45676 4.60858 4.64012 4.67062 4.70433 4.79942 4.88617 4.95715 4.98101 5.06356 5.33222 5.44676 5.61858 5.78681 5.96095 6.18727 6.48344 6.81270 7.34891 8.88143 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.003051 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.002750 B = 9176.508395 C = 9949.834698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.097 3.903 3 N -0.345 5.345 4 O -0.230 6.230 5 C 0.030 3.970 6 H 0.100 0.900 7 C 0.112 3.888 8 N -1.112 6.112 9 S 2.637 3.363 10 O -0.993 6.993 11 O -0.983 6.983 12 C -0.611 4.611 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.552 4.552 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.964 3.036 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.148 4.148 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.425 0.575 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.005 0.995 35 H 0.000 1.000 36 H 0.265 0.735 37 H 0.124 0.876 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 1.260 15.078 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 N -0.091 5.091 4 O -0.246 6.246 5 C -0.030 4.030 6 H 0.118 0.882 7 C -0.015 4.015 8 N -0.873 5.873 9 S 2.732 3.268 10 O -0.983 6.983 11 O -0.973 6.973 12 C -0.741 4.741 13 C -0.146 4.146 14 C -0.008 4.008 15 C -0.590 4.590 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.788 3.212 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.188 4.188 24 H 0.094 0.906 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.260 0.740 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.428 1.936 15.396 25.654 hybrid contribution 0.799 -0.401 -1.021 1.357 sum -19.629 1.535 14.375 24.378 Atomic orbital electron populations 1.20668 0.82640 1.05041 1.06245 1.27040 0.99693 0.91976 0.90825 1.77967 0.89094 1.25139 1.16866 1.91270 1.16702 1.28280 1.88373 1.24008 0.95873 0.82652 1.00472 0.88175 1.21706 0.80747 0.99366 0.99660 1.55314 1.20277 1.40632 1.71063 1.04061 0.72382 0.73108 0.77278 1.93539 1.57907 1.70881 1.76008 1.93532 1.84946 1.38434 1.80405 1.30516 1.07675 1.11280 1.24673 1.21318 0.94049 0.99783 0.99417 1.18967 0.95890 0.95785 0.90163 1.21748 1.08483 1.36086 0.92710 0.92085 1.25947 1.00330 0.96249 0.97096 1.70071 1.38925 1.45848 1.02205 0.85467 0.79221 0.78706 0.77806 1.19541 1.20627 1.18947 1.23259 0.89486 0.98609 1.07414 0.90581 0.87026 0.86738 0.86726 0.89563 0.73958 0.83383 0.84070 0.91704 0.91068 0.97682 0.98173 0.92628 0.85824 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.49 71.24 0.75 0.39 16 2 C 0.10 1.19 7.45 46.92 0.35 1.54 16 3 N -0.35 -7.44 12.45 -40.57 -0.51 -7.95 16 4 O -0.23 -5.41 12.24 -38.30 -0.47 -5.88 16 5 C 0.03 0.46 3.88 31.20 0.12 0.58 16 6 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 7 C 0.11 1.81 5.83 86.38 0.50 2.32 16 8 N -1.11 -23.05 5.89 -187.49 -1.10 -24.15 16 9 S 2.64 73.68 5.46 -56.49 -0.31 73.37 16 10 O -0.99 -34.75 18.08 -127.65 -2.31 -37.05 16 11 O -0.98 -31.83 17.50 -127.65 -2.23 -34.07 16 12 C -0.61 -18.19 6.07 71.98 0.44 -17.76 16 13 C -0.11 -4.31 5.16 30.59 0.16 -4.15 16 14 C 0.03 1.56 4.97 29.85 0.15 1.71 16 15 C -0.55 -31.49 9.11 25.60 0.23 -31.25 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 19 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 C -0.15 -1.28 6.63 30.78 0.20 -1.08 16 24 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 26 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.11 1.52 7.69 -2.39 -0.02 1.50 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.42 8.29 8.62 -96.75 -0.83 7.46 16 30 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 31 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.12 0.77 7.91 -2.39 -0.02 0.75 16 38 H 0.14 0.35 8.14 -2.38 -0.02 0.33 16 Total: -1.00 -81.76 338.79 -1.03 -82.78 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.22 Total: 9.52 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 3.36 Total: -47.13 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.32 Total: -87.83 kcal Atomic # 8 Polarization: -71.99 SS G_CDS: -5.01 Total: -77.00 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 73.68 SS G_CDS: -0.31 Total: 73.37 kcal Total: -81.76 -1.03 -82.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867347402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.201 kcal (2) G-P(sol) polarization free energy of solvation -81.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds